mRNA_Ecto-sp13_S_contig716.18266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig716.18266.1
Unique NamemRNA_Ecto-sp13_S_contig716.18266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig716.18266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig716contigEcto-sp13_S_contig716:8079..9381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1303
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002830.1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.1801302-UTR-Ecto-sp13_S_contig716:8078..84241681463981.1801302-UTR-Ecto-sp13_S_contig716:8078..8424Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig716 8079..8424 +
1681463981.2028103-UTR-Ecto-sp13_S_contig716:8886..93811681463981.2028103-UTR-Ecto-sp13_S_contig716:8886..9381Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig716 8887..9381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463981.1928802-CDS-Ecto-sp13_S_contig716:8424..88861681463981.1928802-CDS-Ecto-sp13_S_contig716:8424..8886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig716 8425..8886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig716.18266.1prot_Ecto-sp13_S_contig716.18266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig716 8425..8886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig716.18266.1

>prot_Ecto-sp13_S_contig716.18266.1 ID=prot_Ecto-sp13_S_contig716.18266.1|Name=mRNA_Ecto-sp13_S_contig716.18266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MRTSHLMCVQQLAQHTPPPPPVCATIISGRTANMEQALMDYTAVGKWSVR
AFACVGWRCRWHLVESCTNILARADSFGREENNSPWPFVAESSTYVSAEI
SLFCRGSECGIFSRLFHDEIELQGAALRQVAVPPAVVLHEQENRCLERRG
SET*
back to top

mRNA from alignment at Ecto-sp13_S_contig716:8079..9381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig716.18266.1 ID=mRNA_Ecto-sp13_S_contig716.18266.1|Name=mRNA_Ecto-sp13_S_contig716.18266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig716:8079..9381+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGGTGGGCATAGCCGGGCGAACGGAAACAGCGTTGAAAAACGAGGCT
GGCTGTTCTCTGACAACGCCGGCGGCCGTATGAGATGTTTTGCAAGGTGG
AGGAAGGAACCGGTTGTTCGTCATAAGCAGTCTAGGGGGGGGGGGGGGGG
GGGGGGGCGGATGCGGGTCGATCTGCCCCCCTCACATACGGACACAGTAT
TCTTGTTGGTTGAACTTGGGTTCTTCCTCTCGTTTGGGTTTTCTTCCCAC
TCTGGCCTTGCTTACCTTGCGTTTTTTTTATTTCCACCGAAGAACGCGTG
GCACCATCACACCAGCCCCCTGGGGGGGGCAGCGATGTTTCGTTAGATGC
GCACCAGTCACTTGATGTGTGTGCAGCAGCTGGCGCAGCATACGCCCCCC
CCGCCCCCCGTCTGTGCTACCATTATTAGTGGACGTACCGCAAATATGGA
ACAAGCTTTGATGGATTACACAGCAGTGGGGAAGTGGTCCGTCCGTGCTT
TTGCTTGCGTCGGTTGGCGGTGCAGGTGGCATCTTGTCGAAAGCTGCACA
AATATTCTGGCTAGGGCCGACAGTTTCGGCCGTGAGGAAAATAACTCGCC
CTGGCCGTTCGTCGCGGAGAGTAGTACCTACGTCAGCGCCGAAATTTCGC
TGTTTTGCCGGGGGAGCGAGTGTGGTATTTTTTCACGTCTTTTCCACGAT
GAAATTGAACTGCAAGGTGCAGCGTTGAGGCAAGTGGCTGTCCCTCCTGC
TGTTGTGCTGCACGAGCAGGAAAATCGGTGTTTAGAGCGGCGAGGTAGCG
AAACCTAGATTTGGATTATAAACAGGGGTCGGTGTTGGTGCAGTAATTAT
GTTGTCAAAACGTAAAAGCGTGGTTACGCTGAAGAGTGAAATAAAACCTG
TCGCAATTTGCTCGCTGGCGAATCCTTTGTTGCTGTTTGGGTGTAGCTTT
GAAAAGGTTTCACAGTTGTTGGCAGGCATGTTTATGCATGTGGGGTAGGG
AAAATGTTGCATTGTGATTAGAGTGTTTGCCAATCGCTGTTTAGAAAATT
CGGAAGGATGTAAATCCAGTGCCATCGCGCAAGCATTGCTACTGTCGGGG
CAGTATGTCGCAGTTTTTTCTTGAGTTATACAGAACAGATAGTGCCCGGG
GGTGTTCATTGCTTGTTGGCCGATGGCGCGGTATATTATTTCTTAGACAA
GCCCAAGAAGTGCAAAACCGAACAGACACTTTTTAGCTCCGTGATATTGC
TTCAACCTCTCTCTTGTTGGAAGCGAGAATACAGGGCGGTGTATGGAACG
ATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig716:8079..9381+

>mRNA_Ecto-sp13_S_contig716.18266.1 ID=mRNA_Ecto-sp13_S_contig716.18266.1|Name=mRNA_Ecto-sp13_S_contig716.18266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig716:8079..9381+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACCAGTCACTTGATGTGTGTGCAGCAGCTGGCGCAGCATACGCC
CCCCCCGCCCCCCGTCTGTGCTACCATTATTAGTGGACGTACCGCAAATA
TGGAACAAGCTTTGATGGATTACACAGCAGTGGGGAAGTGGTCCGTCCGT
GCTTTTGCTTGCGTCGGTTGGCGGTGCAGGTGGCATCTTGTCGAAAGCTG
CACAAATATTCTGGCTAGGGCCGACAGTTTCGGCCGTGAGGAAAATAACT
CGCCCTGGCCGTTCGTCGCGGAGAGTAGTACCTACGTCAGCGCCGAAATT
TCGCTGTTTTGCCGGGGGAGCGAGTGTGGTATTTTTTCACGTCTTTTCCA
CGATGAAATTGAACTGCAAGGTGCAGCGTTGAGGCAAGTGGCTGTCCCTC
CTGCTGTTGTGCTGCACGAGCAGGAAAATCGGTGTTTAGAGCGGCGAGGT
AGCGAAACCTAG
back to top