prot_Ecto-sp13_S_contig71539.18260.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig71539.18260.1
Unique Nameprot_Ecto-sp13_S_contig71539.18260.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length181
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71539.18260.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.930e-43
Identity = 134/170 (78.82%), Postives = 135/170 (79.41%), Query Frame = 0 
Query:   19 GTGGDPAFFHRHPNDKRIERDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----EQEALAEHGRARSRLLSREEVERQPISAAEGQPIDGQFSVEDAEQPLRLEEHEAGGKPPXXXFPLVGLLVLFFF---LYVGIEVGFGAWVAVVVLRDDLAGQAGAALMA 181
            GTG DPAF H HPNDKRIER DS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EQEALAEHGRARS LLSREEV+RQ ISAAEGQPIDGQ S EDAEQP RLE HE GGKP XXX               LYVGIEVGFGAWVAVVVLRDDLAGQAGAALMA
Sbjct:  171 GTGWDPAFSHMHPNDKRIERHDSPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQEALAEHGRARSLLLSREEVDRQSISAAEGQPIDGQSSAEDAEQPFRLEGHEGGGKPXXXXXXXXXXXXXXXXXXXLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMA 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71539.18260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9W6_9PHAE2.930e-4378.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 168..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 140..167
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..139
NoneNo IPR availableTMHMMTMhelixcoord: 145..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71539contigEcto-sp13_S_contig71539:16..558 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71539.18260.1mRNA_Ecto-sp13_S_contig71539.18260.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig71539 16..558 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig71539.18260.1 ID=prot_Ecto-sp13_S_contig71539.18260.1|Name=mRNA_Ecto-sp13_S_contig71539.18260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MGWRVAPTGPRSLGANGTGTGGDPAFFHRHPNDKRIERDDSPPAARRRSE
VQSGGGRGGALATRREEEEEEDAGGEQEALAEHGRARSRLLSREEVERQP
ISAAEGQPIDGQFSVEDAEQPLRLEEHEAGGKPPPPPFPLVGLLVLFFFL
YVGIEVGFGAWVAVVVLRDDLAGQAGAALMA
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