mRNA_Ecto-sp13_S_contig7151.18259.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7151.18259.1
Unique NamemRNA_Ecto-sp13_S_contig7151.18259.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: D8LNZ8_ECTSI (60S ribosomal export protein NMD3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ8_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 3.480e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 PEKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            PEKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL
Sbjct:   19 PEKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 122
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A835ZB23_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB23_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.500e-45
Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:   10 QMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            ++ T+ CC+CS PI PNPT MCV CIRTQVDITEGIA   T+ QCRGC R+L+P WVE  LESRELMA+CLRK+SGL +VKLVDASW+WTE HSRRLK+KL
Sbjct:   15 ELATVACCICSAPIKPNPTHMCVQCIRTQVDITEGIALKPTIFQCRGCMRWLKPNWVEATLESRELMAICLRKVSGLNRVKLVDASWVWTEAHSRRLKLKL 115
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A7R9U6W2_9STRA (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6W2_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.910e-44
Identity = 66/101 (65.35%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:   10 QMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            ++P ILCC C + IPPNPT+MCV C+R++VD+TEG+ T+  ++QCR CQR+LRP W+  +LESRELMA+CLRK++GL+ VKLVDA W+WTEPHSRRL+VKL
Sbjct:   35 EIPNILCCECGVSIPPNPTAMCVSCLRSKVDVTEGLTTSANVYQCRSCQRWLRPPWINAELESRELMALCLRKVNGLQGVKLVDAEWVWTEPHSRRLRVKL 135
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: T0RPV6_SAPDV (60S ribosomal export protein NMD3 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0RPV6_SAPDV)

HSP 1 Score: 154 bits (390), Expect = 1.420e-42
Identity = 67/104 (64.42%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 PEKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            PE+ +P ILCCMC++PI  N  +MCV C++ QVD+TEGI   + MHQCRGC ++ RP WV  +LESREL+A+CL+KISGL KVKLVDA W+WTEPHS+RLK+KL
Sbjct:    5 PEQSLPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPPWVAAELESRELLAICLKKISGLNKVKLVDAGWVWTEPHSKRLKLKL 108
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A024UHG0_9STRA (60S ribosomal export protein NMD3 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024UHG0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.160e-41
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 PEKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            PE ++P ILCC+C++PI  N  +MCV C++ QVD+TEGI   + MHQCRGC ++ RP WV   LESREL+A+CL+KI+GL KVKLVDA WIWTEPHS+RLK+KL
Sbjct:    5 PEHELPDILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPQWVSADLESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKL 108
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A2J7RRM0_9NEOP (60S ribosomal export protein NMD3 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RRM0_9NEOP)

HSP 1 Score: 145 bits (365), Expect = 2.520e-41
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:   22 ILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPG--WVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            ILCC C  PI PNP++MCV C+RTQVDITEGI    T+H C+GC+RYL+P   WV C LESREL+++CL+K+ GL +VKLVDA ++WTEPHS+R+KVKL
Sbjct:   17 ILCCQCGTPIEPNPSNMCVACLRTQVDITEGIPKQATLHFCKGCERYLQPPSEWVPCALESRELLSLCLKKLKGLNRVKLVDAGFVWTEPHSKRIKVKL 115
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A6G0XWA3_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWA3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.080e-40
Identity = 65/103 (63.11%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    4 EKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            E  +P ILCC+C++PI  N  +MCV C++ QVD+TEGI   + MHQCRGC ++ RP WV  +LESREL+A+CL+KI+GL KVKLVDA WIWTEPHS+RLK+KL
Sbjct:    5 EHSLPDILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPQWVSAELESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKL 107
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A1X7T227_AMPQE (60S ribosomal export protein NMD3 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T227_AMPQE)

HSP 1 Score: 143 bits (361), Expect = 1.190e-40
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    4 EKQMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRP--GWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            E  M  ILCC C   I PNP +MCV C+RTQVDITEGI    T++ CR C+RYL+P  GWV C LESREL+A+CL+K+ GL KV LVDA +IWTEPHS+RLK+KL
Sbjct:   12 EDSMQRILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTVYFCRSCERYLQPPSGWVSCSLESRELLALCLKKLKGLGKVHLVDAGFIWTEPHSKRLKIKL 116
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: W2I7I2_PHYPR (60S ribosomal export protein NMD3 n=9 Tax=Peronosporaceae TaxID=4777 RepID=W2I7I2_PHYPR)

HSP 1 Score: 149 bits (375), Expect = 2.160e-40
Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   10 QMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            QMPTILCCMC+ PI  N  + CV C+++QVD+TEGI   + +HQCRGC R+ RP WV  +LESREL+A+CL+KI+ L +VKL+DA+WIWTEPHSRRLK+KL
Sbjct:    7 QMPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKL 107
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BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: D0MSQ0_PHYIT (60S ribosomal export protein NMD3 n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0MSQ0_PHYIT)

HSP 1 Score: 149 bits (375), Expect = 2.220e-40
Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   10 QMPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 312
            QMPTILCCMC+ PI  N  + CV C+++QVD+TEGI   + +HQCRGC R+ RP WV  +LESREL+A+CL+KI+ L +VKL+DA+WIWTEPHSRRLK+KL
Sbjct:    7 QMPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKL 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ8_ECTSI3.480e-67100.0060S ribosomal export protein NMD3 n=2 Tax=Ectocarp... [more]
A0A835ZB23_9STRA4.500e-4572.2860S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A7R9U6W2_9STRA1.910e-4465.3560S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
T0RPV6_SAPDV1.420e-4264.4260S ribosomal export protein NMD3 n=4 Tax=Saproleg... [more]
A0A024UHG0_9STRA2.160e-4163.4660S ribosomal export protein NMD3 n=7 Tax=Aphanomy... [more]
A0A2J7RRM0_9NEOP2.520e-4164.6560S ribosomal export protein NMD3 n=1 Tax=Cryptote... [more]
A0A6G0XWA3_9STRA1.080e-4063.1160S ribosomal export protein NMD3 n=1 Tax=Aphanomy... [more]
A0A1X7T227_AMPQE1.190e-4063.8160S ribosomal export protein NMD3 n=2 Tax=Amphimed... [more]
W2I7I2_PHYPR2.160e-4064.3660S ribosomal export protein NMD3 n=9 Tax=Peronosp... [more]
D0MSQ0_PHYIT2.220e-4064.3660S ribosomal export protein NMD3 n=18 Tax=Peronos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7151contigEcto-sp13_S_contig7151:7103..7701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score213.8
Seed ortholog evalue3.7e-53
Seed eggNOG ortholog2880.D8LNZ8
Model size312
KEGG koko:K07562
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.amine dehydrogenase activity
EggNOG OGsCOG1499@1,KOG2613@2759
Ec32 ortholog descriptionNMD3
Ec32 orthologEc-01_000570.1
Cds size300
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463980.4319637-UTR-Ecto-sp13_S_contig7151:7102..71141681463980.4319637-UTR-Ecto-sp13_S_contig7151:7102..7114Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7151 7103..7114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463980.444074-CDS-Ecto-sp13_S_contig7151:7114..73301681463980.444074-CDS-Ecto-sp13_S_contig7151:7114..7330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7151 7115..7330 +
1681463980.4539273-CDS-Ecto-sp13_S_contig7151:7617..77011681463980.4539273-CDS-Ecto-sp13_S_contig7151:7617..7701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7151 7618..7701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7151.18259.1prot_Ecto-sp13_S_contig7151.18259.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7151 7115..7701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7151.18259.1

>prot_Ecto-sp13_S_contig7151.18259.1 ID=prot_Ecto-sp13_S_contig7151.18259.1|Name=mRNA_Ecto-sp13_S_contig7151.18259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRY
LRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL
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mRNA from alignment at Ecto-sp13_S_contig7151:7103..7701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7151.18259.1 ID=mRNA_Ecto-sp13_S_contig7151.18259.1|Name=mRNA_Ecto-sp13_S_contig7151.18259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7151:7103..7701+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAGAAGCAAATGCCCACAATCCTGTGCTGCATGTGCTCTCTTCCCAT
CCCGCCCAACCCGACGTCGATGTGCGTCCTGTGCATCAGGACACAGGTTG
ATATCACGGAGGGCATTGCCACCAACCTCACCATGCACCAGTGCCGCGGG
TGCCAGCGCTACTTGAGGCCTGGGTGGGTGGAATGCAAGCTTGAGTCTCG
GGAGCTCATGGCCGTGTGCTTGCGAAAGGTGAGACATGGCAACGTGTGCG
TTCTGGTAGTCAGAGCGCTGCTGTGTGTCGGTACATGGTGGGACAATTGC
TCACATGCTGATCCCTATTCTCACAGCGTATGGGGGCTGGGACCAAGTTG
CTCCTGCCGTTGGTCCCAAAGACTGTGGTCGTCTACGCCTTCCTGTACAG
ACCAAGTACTTACACCCTTCTTGTTCACCTTGATCTTTTCGCTTTGAGTA
ACATATTAAGGGGCGTGTTGACTGAACTCCCTTCCCCCCACACGCCCCCG
CTCGGAATGGTCCAGATCAGCGGCTTGAAGAAGGTCAAGCTGGTGGACGC
CTCCTGGATCTGGACAGAGCCTCACAGCCGACGGCTTAAGGTCAAGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7151:7103..7701+

>mRNA_Ecto-sp13_S_contig7151.18259.1 ID=mRNA_Ecto-sp13_S_contig7151.18259.1|Name=mRNA_Ecto-sp13_S_contig7151.18259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7151:7103..7701+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCACAATCCTGTGCTGCATGTGCTCTCTTCCCATCCCGCCCAACCC
GACGTCGATGTGCGTCCTGTGCATCAGGACACAGGTTGATATCACGGAGG
GCATTGCCACCAACCTCACCATGCACCAGTGCCGCGGGTGCCAGCGCTAC
TTGAGGCCTGGGTGGGTGGAATGCAAGCTTGAGTCTCGGGAGCTCATGGC
CGTGTGCTTGCGAAAGATCAGCGGCTTGAAGAAGGTCAAGCTGGTGGACG
CCTCCTGGATCTGGACAGAGCCTCACAGCCGACGGCTTAAGGTCAAGCTC
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