mRNA_Ecto-sp13_S_contig71508.18257.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71508.18257.1
Unique NamemRNA_Ecto-sp13_S_contig71508.18257.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: UPI0003B3F0AB (hypothetical protein n=1 Tax=Thalassospira lucentensis TaxID=168935 RepID=UPI0003B3F0AB)

HSP 1 Score: 100 bits (249), Expect = 1.090e-21
Identity = 103/107 (96.26%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            GNASGAAGNDTLSNIEDIAGSDYNDTLIG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS
Sbjct: 2154 GNASGAAGNDTLSNIEDIAGSDYNDTLIGDDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 2260
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: A0A2N3L1B9_9PROT (Uncharacterized protein (Fragment) n=3 Tax=Thalassospira TaxID=168934 RepID=A0A2N3L1B9_9PROT)

HSP 1 Score: 98.2 bits (243), Expect = 6.910e-21
Identity = 101/107 (94.39%), Postives = 101/107 (94.39%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            GNASGAAGNDTLSNIEDIAGSDYNDTLIG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YSASEPVTINLAEGTATSESGTDTLS VENVIGS
Sbjct: 2172 GNASGAAGNDTLSNIEDIAGSDYNDTLIGDDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYSASEPVTINLAEGTATSESGTDTLSAVENVIGS 2278
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: UPI000519FE13 (hypothetical protein n=1 Tax=Thalassospira australica TaxID=1528106 RepID=UPI000519FE13)

HSP 1 Score: 74.7 bits (182), Expect = 1.090e-12
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G ASGAAGNDTLSNIE++AGSD++DTLI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Y+ S  VTINL+EGTAT E+GTD+LSGVENVIGS
Sbjct: 2221 GTASGAAGNDTLSNIENVAGSDHDDTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNYANSGAVTINLSEGTATDETGTDSLSGVENVIGS 2327
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: K2MCC2_9PROT (Calcium binding hemolysin protein n=2 Tax=Thalassospira profundimaris TaxID=502049 RepID=K2MCC2_9PROT)

HSP 1 Score: 62.0 bits (149), Expect = 2.860e-8
Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G ASGAAGNDTL   E + GSD++DTLIG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y+    V I+LAEGTA+   GTD++SGVENVIGS
Sbjct: 2169 GTASGAAGNDTLEGFESVQGSDHDDTLIGDAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYAGGSSVNIDLAEGTASDADGTDSISGVENVIGS 2275
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: UPI00143187C6 (hypothetical protein n=1 Tax=Thalassospira sp. HF15 TaxID=2722755 RepID=UPI00143187C6)

HSP 1 Score: 61.6 bits (148), Expect = 3.900e-8
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G  SGAAGNDTL +IE++ GSD++DTLI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Y     V+I+LA GTATS +GTDT+SGVENV+GS
Sbjct: 2153 GTTSGAAGNDTLESIENVQGSDHDDTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDYEGQGAVSIDLAAGTATSANGTDTISGVENVVGS 2259
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: UPI000DEE0D08 (hypothetical protein n=2 Tax=Thalassospira TaxID=168934 RepID=UPI000DEE0D08)

HSP 1 Score: 60.8 bits (146), Expect = 7.210e-8
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G ASGAAGNDTLS IE+++GSD++D L G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +  S+ V ++L  GTA SE+GTDT+S VENVIGS
Sbjct: 2232 GTASGAAGNDTLSEIENVSGSDFDDILAGDSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFVGSDAVAVDLGAGTAVSEAGTDTISNVENVIGS 2338
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: UPI0008DD8F85 (hypothetical protein n=1 Tax=Thalassospira sp. MIT1004 TaxID=1882733 RepID=UPI0008DD8F85)

HSP 1 Score: 60.5 bits (145), Expect = 9.810e-8
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G ASG AGNDTLS IE+I+GSD++D L G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +  S  V I+LA GTATSE+GTD++S VENVIGS
Sbjct: 2223 GTASGGAGNDTLSEIENISGSDFDDILTGDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSFFGSGAVNIDLAAGTATSEAGTDSISNVENVIGS 2329
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BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: A0A1B9VD98_9PROT (Hemolysin-type calcium-binding region protein n=4 Tax=Thalassospira TaxID=168934 RepID=A0A1B9VD98_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 9.810e-8
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G ASG AGNDTLS IE+I+GSD++D L G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +  S  V I+LA GTATSE+GTD++S VENVIGS
Sbjct: 2223 GTASGGAGNDTLSEIENISGSDFDDILTGDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSFFGSGAVNIDLAAGTATSEAGTDSISNVENVIGS 2329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: UPI001E482043 (hypothetical protein n=1 Tax=Thalassospira xiamenensis TaxID=220697 RepID=UPI001E482043)

HSP 1 Score: 60.5 bits (145), Expect = 9.810e-8
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G ASG AGNDTLS IE+I+GSD++D L G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +  S  V I+LA GTATSE+GTD++S VENVIGS
Sbjct: 2223 GTASGGAGNDTLSEIENISGSDFDDILTGDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSFFGSGAVNIDLAAGTATSEAGTDSISNVENVIGS 2329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Match: A0A367X748_9PROT (Uncharacterized protein n=2 Tax=Thalassospira profundimaris TaxID=502049 RepID=A0A367X748_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 1.820e-7
Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 GNASGAAGNDTLSNIEDIAGSDYNDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASEPVTINLAEGTATSESGTDTLSGVENVIGS 321
            G ASGA GNDTL++IE++ GSD++DTLI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   Y   + V+++L+EGTAT   GTDT+SGVENV GS
Sbjct: 2192 GTASGADGNDTLASIENVTGSDHDDTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSYEKGDAVSVDLSEGTATRADGTDTISGVENVTGS 2298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71508.18257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
UPI0003B3F0AB1.090e-2196.26hypothetical protein n=1 Tax=Thalassospira lucente... [more]
A0A2N3L1B9_9PROT6.910e-2194.39Uncharacterized protein (Fragment) n=3 Tax=Thalass... [more]
UPI000519FE131.090e-1285.05hypothetical protein n=1 Tax=Thalassospira austral... [more]
K2MCC2_9PROT2.860e-874.77Calcium binding hemolysin protein n=2 Tax=Thalasso... [more]
UPI00143187C63.900e-877.57hypothetical protein n=1 Tax=Thalassospira sp. HF1... [more]
UPI000DEE0D087.210e-873.83hypothetical protein n=2 Tax=Thalassospira TaxID=1... [more]
UPI0008DD8F859.810e-874.77hypothetical protein n=1 Tax=Thalassospira sp. MIT... [more]
A0A1B9VD98_9PROT9.810e-874.77Hemolysin-type calcium-binding region protein n=4 ... [more]
UPI001E4820439.810e-874.77hypothetical protein n=1 Tax=Thalassospira xiamene... [more]
A0A367X748_9PROT1.820e-774.77Uncharacterized protein n=2 Tax=Thalassospira prof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71508contigEcto-sp13_S_contig71508:21..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score76.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog1528106.JRJE01000032_gene3206
Model size456
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.COG2931 RTX toxins and related Ca2 -binding proteins
EggNOG OGs1MU7T@1224,2JRKY@204441,2TRVY@28211,COG2931@1,COG2931@2
Cds size456
COG Functional cat.Q
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463980.313604-CDS-Ecto-sp13_S_contig71508:20..4761681463980.313604-CDS-Ecto-sp13_S_contig71508:20..476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71508 21..476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71508.18257.1prot_Ecto-sp13_S_contig71508.18257.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71508 21..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71508.18257.1

>prot_Ecto-sp13_S_contig71508.18257.1 ID=prot_Ecto-sp13_S_contig71508.18257.1|Name=mRNA_Ecto-sp13_S_contig71508.18257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
GNASGAAGNDTLSNIEDIAGSDYNDTLIGDDGRNVISGGAGDDSIDGGAG
DDTLLGGAGNDIIEGGDGTDTVDYSASEPVTINLAEGTATSESGTDTLSG
VENVIGSAGADDITGDDGVNVINAGSGSDTIRGGAGDDTLSGGSGADVYK
IA
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mRNA from alignment at Ecto-sp13_S_contig71508:21..476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71508.18257.1 ID=mRNA_Ecto-sp13_S_contig71508.18257.1|Name=mRNA_Ecto-sp13_S_contig71508.18257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71508:21..476+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAATGCATCTGGTGCAGCTGGCAATGATACGCTTTCCAATATTGAGGA
TATTGCCGGGTCGGATTACAACGATACCTTGATCGGTGATGATGGTCGCA
ATGTCATTTCTGGCGGTGCGGGTGATGACTCGATAGACGGCGGTGCTGGT
GACGACACACTTCTTGGTGGTGCCGGGAATGACATCATCGAAGGCGGCGA
TGGCACAGATACTGTCGATTATAGCGCAAGCGAACCGGTTACGATCAATC
TTGCCGAGGGTACAGCAACCAGCGAAAGTGGCACAGATACCCTGAGCGGT
GTCGAGAATGTCATTGGTTCCGCTGGTGCTGACGACATTACGGGCGACGA
CGGGGTGAATGTTATCAATGCCGGAAGTGGTAGTGATACGATCCGCGGCG
GTGCCGGTGATGATACCCTGAGCGGTGGTTCGGGTGCTGATGTTTACAAA
ATCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71508:21..476+

>mRNA_Ecto-sp13_S_contig71508.18257.1 ID=mRNA_Ecto-sp13_S_contig71508.18257.1|Name=mRNA_Ecto-sp13_S_contig71508.18257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71508:21..476+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAATGCATCTGGTGCAGCTGGCAATGATACGCTTTCCAATATTGAGGA
TATTGCCGGGTCGGATTACAACGATACCTTGATCGGTGATGATGGTCGCA
ATGTCATTTCTGGCGGTGCGGGTGATGACTCGATAGACGGCGGTGCTGGT
GACGACACACTTCTTGGTGGTGCCGGGAATGACATCATCGAAGGCGGCGA
TGGCACAGATACTGTCGATTATAGCGCAAGCGAACCGGTTACGATCAATC
TTGCCGAGGGTACAGCAACCAGCGAAAGTGGCACAGATACCCTGAGCGGT
GTCGAGAATGTCATTGGTTCCGCTGGTGCTGACGACATTACGGGCGACGA
CGGGGTGAATGTTATCAATGCCGGAAGTGGTAGTGATACGATCCGCGGCG
GTGCCGGTGATGATACCCTGAGCGGTGGTTCGGGTGCTGATGTTTACAAA
ATCGCG
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