mRNA_Ecto-sp13_S_contig7148.18253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7148.18253.1
Unique NamemRNA_Ecto-sp13_S_contig7148.18253.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7148.18253.1 vs. uniprot
Match: D7FPT3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT3_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 9.900e-89
Identity = 149/175 (85.14%), Postives = 155/175 (88.57%), Query Frame = 2 
Query:  185 RSGIFCGDRGGKIPGGDECLVQALTLKLKAGPAAPGSLAEGXXXXXXXXXXXXXXXXXPHHGSVKWAPLSTARRVGSGGGPKRPLKLTSMNFSASSTNEDERGGTASRGGSRIVSGLGEGVAGNISRTNIVAGDKPGAVSLATLDVGARVSPALPYGKVVSLPSGGSGIGLIRGR 709
            RSG FCGDRGGK+PGG+ECLVQALTLKLKAGPA+PGSLAE                  PHHGSVKWAPLSTARR+GSGGGPKRPLKLTSMNFSASST+EDERGGTASRGGSRIVSGLGEGVAGNISRT+IV GDKPGAVSLATLDVGARVSPALPYGKVVSLPSGGSGIGLIRGR
Sbjct:  290 RSGFFCGDRGGKVPGGEECLVQALTLKLKAGPASPGSLAE-VAGGVAVGGQHRGGGGQPHHGSVKWAPLSTARRIGSGGGPKRPLKLTSMNFSASSTSEDERGGTASRGGSRIVSGLGEGVAGNISRTSIVGGDKPGAVSLATLDVGARVSPALPYGKVVSLPSGGSGIGLIRGR 463
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7148.18253.1 vs. uniprot
Match: A0A6H5KZN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.170e-38
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:  452 MNFSASSTNEDERGGTASRGGSRIVSGLGEGVAGNISRTNIVAGDKPGAVSLATLDVGARVSPALPYGKVVSLPSGGSGIGLIRGR 709
            MNFS+S+T+EDERGGTASRGGSRI +GLGEGVAGNISRT+IV GDKPGAVSLAT+DVGARV PALPY K+VSLPSG SGIGLIRGR
Sbjct:    1 MNFSSSTTSEDERGGTASRGGSRIAAGLGEGVAGNISRTSIVGGDKPGAVSLATIDVGARVPPALPYDKIVSLPSGDSGIGLIRGR 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7148.18253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPT3_ECTSI9.900e-8985.14Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZN9_9PHAE1.170e-3886.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7148contigEcto-sp13_S_contig7148:4891..7706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score285.0
Seed ortholog evalue2.8e-74
Seed eggNOG ortholog2880.D7FPT3
Model size907
KEGG koko:K16606
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size624
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7148.18253.1prot_Ecto-sp13_S_contig7148.18253.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7148 4979..7511 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463980.032594-UTR-Ecto-sp13_S_contig7148:4890..49781681463980.032594-UTR-Ecto-sp13_S_contig7148:4890..4978Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7148 4891..4978 +
1681463980.0872889-UTR-Ecto-sp13_S_contig7148:7511..77061681463980.0872889-UTR-Ecto-sp13_S_contig7148:7511..7706Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7148 7512..7706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463980.0449579-CDS-Ecto-sp13_S_contig7148:4978..49861681463980.0449579-CDS-Ecto-sp13_S_contig7148:4978..4986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7148 4979..4986 +
1681463980.0562298-CDS-Ecto-sp13_S_contig7148:5592..56821681463980.0562298-CDS-Ecto-sp13_S_contig7148:5592..5682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7148 5593..5682 +
1681463980.0671058-CDS-Ecto-sp13_S_contig7148:6280..65131681463980.0671058-CDS-Ecto-sp13_S_contig7148:6280..6513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7148 6281..6513 +
1681463980.077066-CDS-Ecto-sp13_S_contig7148:7218..75111681463980.077066-CDS-Ecto-sp13_S_contig7148:7218..7511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7148 7219..7511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7148.18253.1

>prot_Ecto-sp13_S_contig7148.18253.1 ID=prot_Ecto-sp13_S_contig7148.18253.1|Name=mRNA_Ecto-sp13_S_contig7148.18253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MAGYPTGPIAHSFSPFRPYDGLPPPNAVSGSLRSGIFCGDRGGKIPGGDE
CLVQALTLKLKAGPAAPGSLAEGPGGVAVGGGQHRGGGGQPHHGSVKWAP
LSTARRVGSGGGPKRPLKLTSMNFSASSTNEDERGGTASRGGSRIVSGLG
EGVAGNISRTNIVAGDKPGAVSLATLDVGARVSPALPYGKVVSLPSGGSG
IGLIRGR*
back to top

mRNA from alignment at Ecto-sp13_S_contig7148:4891..7706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7148.18253.1 ID=mRNA_Ecto-sp13_S_contig7148.18253.1|Name=mRNA_Ecto-sp13_S_contig7148.18253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7148:4891..7706+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGGGGTAACCGGCGGGAGAACGTCACGGTCGGTCACGTAGGAGGCA
TCACGAGAAAGTCGACGGTAGCCACACAAGGCGGCGGTATGGCAGGGTAA
GCTTGTACGTCCATACCCTGGTCGCTTAGCTTTGATATACTGCTATTTTC
TAGTGAAGACCATGCTGGTGTGAGAGCTTGTCGCGATGAGTGCCCGACGT
CCGATCGAAAGATGTCTTTGTACCTTTCGTCGTGATATGTATGGGGCACT
AGGAATGAGCGTGGCGACGTGTTGCCCGCATTTAAACCATAAGGTTCGTC
CATAAGGCATGTTTGTGTTACACCCAACGGCAAAAGCATATTGGTATATT
ATCGGGCTGTGTTCGCGGACATCAACGATACGCAAGCTGCGGGAACATTC
GCGGTGCAGGCCACAAGCGTCAGTATACTTCCATATCTTTCGAAGACCTA
CTTGTCCTCCACAGTGATTGCTGGGGCATTGGACGACACGGAAAGCTAGC
CTTCGGCATTAGGCAGTCGTCCTCTCTGGGGCGTTCCGCTCCCCCCACAC
AGCACAATTGAACGAAATCACCGCAAACAAAGCTTAAAGACCAAGAGGAC
GACCTGCAGTTATCCCGGCCTTTTCTCCCCACTGTCTTCCTTTCGTTTGG
GTTTTCGATGTGCCATGGATGGTGATTTTTTCGCACCGTTGCTCGTGACC
AGGTACCCGACAGGACCGATAGCCCACTCGTTTAGCCCGTTCAGACCGTA
CGACGGACTGCCTCCGCCAAACGCTGTCTCTGGATCCTTGAGGTGTGTGC
GTGAGCTACAGAGAGTATGTGTGTGGGGGGCTCTGCTTGCCTAGGTTACT
TAACATTGACCGGCTCTCTTTCGAGACCGATCACCCCCCTTGTCGTAGCG
TGGCCGGCTCTGAAAGTACATAGCAACTAGCACACAATCAAGAGCGGCTG
ATGCGTAGATCTGCTTCGGGTAGCTCTGCCCTTGGGAAGTCACGTGTGTG
TCCCCGATGAACAGACAGGGTCGACGCCAAAGCCTGAGTTACTACGCAAG
CCACGGAACTACCGTGGGAAGTAGAAATATATGCCGCACGAGGCACGAAG
CCCCAGAAAACGTCGAAAACGTCCTCATTGGGGAGTATCTCTCTCTTCTC
GGAGACCTCGTCGAACGGGAGCTGCTTACGCACAAACCTTTAGCCCCATC
TTCTAAGTTTGTCGTTTGTTTCACGCAACGTTTGTGTATTCGAAAAAAAA
ATCCACGACCTCGGTGCGAACAGCAACGCACATCCGAAGCATATCCTTCG
TACAAATCCCGGCGGCAGGTTTCGCTGACCTCCTCTCTTGCCCTCATGCG
CGCTCGATCCTCCTGGGTCTCCAATCGCCGTTGATCGTAGGAGTGGAATT
TTTTGTGGCGATCGTGGAGGAAAAATACCCGGCGGGGACGAGTGCTTGGT
GCAGGCCTTGACGCTCAAATTAAAAGCGGGCCCTGCTGCTCCCGGGTCCC
TCGCGGAAGGTCCTGGGGGCGTGGCGGTTGGCGGCGGGCAGCACCGCGGT
GGGGGGGGGCAACCTCACCACGGCAGCGTGAAGTGGGCGCCGCTTTCGAC
AGCACGGCGTGTTGGCTCGGGAGGTGAGGGATAGATCGCACCCTACGAAT
CAACTGCCTGATTTTTTCCTCGCACACCGTGCCCGTTCCGAAAAAAAGGT
GCCAACACTTGACTTCCACGGTTCCATGCGTGCGTGTGTTGCGATCCAAA
CAAAGCTGTCTGCTTGCGCCCCGGAATCGTGCACCCGAACATGCAAAAAG
CCTCCTCACGGTCATGTATACATCGTGGAGCACGAACCGAAACAAGTTAG
CACCCAAAACGTGTGTGTGTATGAGGTCGCGTCTGACGCGCGGCAGTAGA
CAACCCGAAGTGCGAATGAGATTGCTGTCAGTTATAACTCCAACGTGTGC
GCTCTCACTCATGACCGTCGCAAGCAAGGAATGTTGTCTTACTAAGAGGA
AAAAAAAGTGTGAGAGCTCATCTAAGGAGATACAGAGATACCCATTGCGT
GGGGTAGGTTGGGTGGTCGTTTTTCTCCAAGTCGGCCAGTCCACATCCTA
CTCTGGCATATTCTTACCCTCTGCGGAGATGATGTTACTGTGAGTTCATG
ACGCAGAGCCCTCCCGGGCGTGCATGATCAACCATGAAGTAGCTACACAT
CCATCGATGGACGTGTTTCGTCACATGATGGTGATTCCTTGACGCCCCGA
AGCAAGAGTAAGCCCTCTGCCTCCAGGCAACCCGTCCCCTCAACCCCCTC
CCACCCCCCTTCACCACTCAAAACTCAGGGGGACCGAAACGTCCGCTAAA
ACTCACGTCAATGAACTTCTCAGCCTCATCTACTAACGAAGACGAGCGAG
GCGGTACAGCCAGTCGAGGCGGATCGCGAATTGTGTCTGGTCTTGGCGAG
GGTGTAGCTGGCAATATCAGTAGGACAAACATCGTAGCTGGAGACAAGCC
TGGAGCGGTATCGTTGGCAACGCTTGATGTAGGGGCGAGGGTTTCGCCTG
CATTGCCGTACGGCAAGGTAGTTTCTCTGCCATCGGGGGGCAGTGGTATC
GGGCTTATCAGAGGAAGATGAAGAACAAAAGCTACGGTTGGTGTCACGAG
TGTGCTATTGGTGGGCAAAGAAACCACACCCTGCCGTCCACATGTACATG
TGATAGATACGTAGTTTGTACTGCCTTTGTTTTTGGATGCCGGAAAACTG
TGTGAGGTGGTGTGGATTGATGACTGACCGCGAAGAGGTAGTCTGTGATA
TCTAGCACATGTGTGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7148:4891..7706+

>mRNA_Ecto-sp13_S_contig7148.18253.1 ID=mRNA_Ecto-sp13_S_contig7148.18253.1|Name=mRNA_Ecto-sp13_S_contig7148.18253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7148:4891..7706+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGGTACCCGACAGGACCGATAGCCCACTCGTTTAGCCCGTTCAG
ACCGTACGACGGACTGCCTCCGCCAAACGCTGTCTCTGGATCCTTGAGGA
GTGGAATTTTTTGTGGCGATCGTGGAGGAAAAATACCCGGCGGGGACGAG
TGCTTGGTGCAGGCCTTGACGCTCAAATTAAAAGCGGGCCCTGCTGCTCC
CGGGTCCCTCGCGGAAGGTCCTGGGGGCGTGGCGGTTGGCGGCGGGCAGC
ACCGCGGTGGGGGGGGGCAACCTCACCACGGCAGCGTGAAGTGGGCGCCG
CTTTCGACAGCACGGCGTGTTGGCTCGGGAGGGGGACCGAAACGTCCGCT
AAAACTCACGTCAATGAACTTCTCAGCCTCATCTACTAACGAAGACGAGC
GAGGCGGTACAGCCAGTCGAGGCGGATCGCGAATTGTGTCTGGTCTTGGC
GAGGGTGTAGCTGGCAATATCAGTAGGACAAACATCGTAGCTGGAGACAA
GCCTGGAGCGGTATCGTTGGCAACGCTTGATGTAGGGGCGAGGGTTTCGC
CTGCATTGCCGTACGGCAAGGTAGTTTCTCTGCCATCGGGGGGCAGTGGT
ATCGGGCTTATCAGAGGAAGATGA
back to top