mRNA_Ecto-sp13_S_contig7145.18251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7145.18251.1
Unique NamemRNA_Ecto-sp13_S_contig7145.18251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7145.18251.1 vs. uniprot
Match: D7FVG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG6_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 5.720e-114
Identity = 261/282 (92.55%), Postives = 264/282 (93.62%), Query Frame = 1 
Query:    1 MRQGGHSKRPREGNSALYTAVCRGDANLVAELLKPKRHGQRDGSAAAAAGAPAALDLEELSRGSTALHAACGTGQSRIVALLIEAGGNPNTVRPKDGYSPLLIAVEVRERGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDILELLVEGATAAACDDGFLARKLLLQLSDARGHQPLHCAVRDGARARDTVLTLLGMGAEVDGGALPAXXXXXXXXXPLMLAALKVLPAIAKVLIEAGANVNVR 846
            MRQGGHSKRPREGNSALYTAVCRGDA+LVAELLKPK HGQRDGSAAAAAGAPAALDLEELSRGSTALHA CGTGQSRIVA+LIEAG +PNTVRPKDGYSPLLIAVEVRER IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ILELLVEGA AAACDDG LARKLLLQLSDARGHQPLHCAVRDGARARDTVL LLGMGAEVDGGALPA         PLMLAALKVLPAIAKVLIEAGANVN R
Sbjct:    1 MRQGGHSKRPREGNSALYTAVCRGDADLVAELLKPKPHGQRDGSAAAAAGAPAALDLEELSRGSTALHAGCGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAVEVRERDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILELLVEGAAAAACDDGLLARKLLLQLSDARGHQPLHCAVRDGARARDTVLALLGMGAEVDGGALPALPPPPT---PLMLAALKVLPAIAKVLIEAGANVNAR 279
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BLAST of mRNA_Ecto-sp13_S_contig7145.18251.1 vs. uniprot
Match: A0A6H5L3F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F6_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.400e-55
Identity = 96/105 (91.43%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    1 MRQGGHSKRPREGNSALYTAVCRGDANLVAELLKPKRHGQRDGSAAAAAGAPAALDLEELSRGSTALHAACGTGQSRIVALLIEAGGNPNTVRPKDGYSPLLIAV 315
            MRQGGHSK PREGNSALYTAVCRGDANL AELLK KRHGQ DGSAAAAAGAPAALDLEELSRGSTALHAACGT QSRIVA+LIEAG +PNTV PKDGYSPLLIAV
Sbjct:    1 MRQGGHSKPPREGNSALYTAVCRGDANLAAELLKSKRHGQPDGSAAAAAGAPAALDLEELSRGSTALHAACGTWQSRIVAMLIEAGADPNTVSPKDGYSPLLIAV 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7145.18251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVG6_ECTSI5.720e-11492.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3F6_9PHAE2.400e-5591.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7145contigEcto-sp13_S_contig7145:6209..7054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score339.0
Seed ortholog evalue2.2e-90
Seed eggNOG ortholog2880.D7FVG6
Model size846
KEGG koko:K16726
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-09_001010.1
Cds size846
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.798659-CDS-Ecto-sp13_S_contig7145:6208..70541681463979.798659-CDS-Ecto-sp13_S_contig7145:6208..7054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7145 6209..7054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7145.18251.1prot_Ecto-sp13_S_contig7145.18251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7145 6209..7054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7145.18251.1

>prot_Ecto-sp13_S_contig7145.18251.1 ID=prot_Ecto-sp13_S_contig7145.18251.1|Name=mRNA_Ecto-sp13_S_contig7145.18251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
MRQGGHSKRPREGNSALYTAVCRGDANLVAELLKPKRHGQRDGSAAAAAG
APAALDLEELSRGSTALHAACGTGQSRIVALLIEAGGNPNTVRPKDGYSP
LLIAVEVRERGIVNALLEAKADPELFSHAEGIAPLHMAASQGMTEIVLDL
LRAGANQLQPTLGKLLAPIHYASFSGCVDILELLVEGATAAACDDGFLAR
KLLLQLSDARGHQPLHCAVRDGARARDTVLTLLGMGAEVDGGALPALPAL
PPPPTPLMLAALKVLPAIAKVLIEAGANVNVR
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mRNA from alignment at Ecto-sp13_S_contig7145:6209..7054-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7145.18251.1 ID=mRNA_Ecto-sp13_S_contig7145.18251.1|Name=mRNA_Ecto-sp13_S_contig7145.18251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7145:6209..7054- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGGGGGGACACTCCAAGCGGCCGAGGGAGGGAAACTCCGCCCT
GTACACCGCCGTCTGCCGGGGAGACGCCAACCTTGTGGCGGAGCTCCTGA
AGCCGAAGCGACATGGGCAGCGCGACGGGAGCGCGGCGGCGGCGGCAGGC
GCACCGGCCGCGTTAGACTTGGAGGAGCTCTCCCGTGGCTCCACCGCCCT
CCACGCCGCCTGCGGGACGGGTCAGTCCCGGATCGTGGCACTGCTGATCG
AGGCGGGGGGCAACCCTAACACGGTCAGGCCCAAAGACGGCTACAGCCCT
CTCCTGATTGCCGTGGAGGTGAGGGAGCGAGGCATCGTCAACGCTCTGCT
GGAGGCCAAGGCGGACCCGGAATTGTTCAGCCACGCCGAGGGCATCGCAC
CCCTCCACATGGCTGCCTCGCAGGGAATGACGGAAATCGTCCTCGACTTG
CTGCGCGCCGGCGCGAACCAGCTGCAGCCCACGCTGGGCAAGCTGCTTGC
CCCCATCCACTACGCCAGCTTCTCCGGTTGCGTGGACATCCTCGAGCTGC
TCGTGGAGGGAGCAACCGCGGCGGCGTGCGACGATGGCTTCCTCGCGCGC
AAGCTCCTCCTCCAGCTGAGCGACGCGCGGGGCCACCAGCCGCTGCACTG
CGCCGTTCGGGACGGGGCGCGCGCCCGGGACACGGTGCTGACGCTGCTCG
GGATGGGGGCCGAGGTGGACGGCGGGGCCCTCCCGGCCCTCCCGGCCCTT
CCGCCGCCCCCGACCCCGCTGATGCTCGCGGCACTAAAGGTCTTGCCGGC
GATCGCGAAGGTTCTCATCGAGGCCGGCGCGAACGTCAACGTTCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7145:6209..7054-

>mRNA_Ecto-sp13_S_contig7145.18251.1 ID=mRNA_Ecto-sp13_S_contig7145.18251.1|Name=mRNA_Ecto-sp13_S_contig7145.18251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7145:6209..7054- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGGGGGGACACTCCAAGCGGCCGAGGGAGGGAAACTCCGCCCT
GTACACCGCCGTCTGCCGGGGAGACGCCAACCTTGTGGCGGAGCTCCTGA
AGCCGAAGCGACATGGGCAGCGCGACGGGAGCGCGGCGGCGGCGGCAGGC
GCACCGGCCGCGTTAGACTTGGAGGAGCTCTCCCGTGGCTCCACCGCCCT
CCACGCCGCCTGCGGGACGGGTCAGTCCCGGATCGTGGCACTGCTGATCG
AGGCGGGGGGCAACCCTAACACGGTCAGGCCCAAAGACGGCTACAGCCCT
CTCCTGATTGCCGTGGAGGTGAGGGAGCGAGGCATCGTCAACGCTCTGCT
GGAGGCCAAGGCGGACCCGGAATTGTTCAGCCACGCCGAGGGCATCGCAC
CCCTCCACATGGCTGCCTCGCAGGGAATGACGGAAATCGTCCTCGACTTG
CTGCGCGCCGGCGCGAACCAGCTGCAGCCCACGCTGGGCAAGCTGCTTGC
CCCCATCCACTACGCCAGCTTCTCCGGTTGCGTGGACATCCTCGAGCTGC
TCGTGGAGGGAGCAACCGCGGCGGCGTGCGACGATGGCTTCCTCGCGCGC
AAGCTCCTCCTCCAGCTGAGCGACGCGCGGGGCCACCAGCCGCTGCACTG
CGCCGTTCGGGACGGGGCGCGCGCCCGGGACACGGTGCTGACGCTGCTCG
GGATGGGGGCCGAGGTGGACGGCGGGGCCCTCCCGGCCCTCCCGGCCCTT
CCGCCGCCCCCGACCCCGCTGATGCTCGCGGCACTAAAGGTCTTGCCGGC
GATCGCGAAGGTTCTCATCGAGGCCGGCGCGAACGTCAACGTTCGA
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