mRNA_Ecto-sp13_S_contig12161.1825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12161.1825.1
Unique NamemRNA_Ecto-sp13_S_contig12161.1825.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12161.1825.1 vs. uniprot
Match: D8LBJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.790e-77
Identity = 146/156 (93.59%), Postives = 152/156 (97.44%), Query Frame = 1 
Query:    1 SPIGRWRGYCLAMASCAYVCAVLRESEDDMLFADMAETAAAAWAAASEVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGASGNRHNGHDSGSGGAGTAAAVMMVGEG 468
            SPIGRWRGYCLA+ASCAYVCAVLRESEDDMLFADMAETAAAAWAAA EVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGASGNR+NG DSGSGGAGTAA++++  EG
Sbjct:  565 SPIGRWRGYCLALASCAYVCAVLRESEDDMLFADMAETAAAAWAAAREVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGASGNRNNGTDSGSGGAGTAASMIVEEEG 720
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BLAST of mRNA_Ecto-sp13_S_contig12161.1825.1 vs. uniprot
Match: A0A6H5JXK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK1_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 5.240e-72
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    1 SPIGRWRGYCLAMASCAYVCAVLRESEDDMLFADMAETAAAAWAAASEVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGASGNRHNG 408
            SPIGRWRGYCL +ASCAYVCAVLRESEDDMLFADMAE  AAAWAAA EVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGASGNR+NG
Sbjct:   13 SPIGRWRGYCLVLASCAYVCAVLRESEDDMLFADMAEATAAAWAAAREVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGASGNRNNG 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12161.1825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBJ7_ECTSI1.790e-7793.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXK1_9PHAE5.240e-7295.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12161contigEcto-sp13_S_contig12161:3953..5043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score261.5
Seed ortholog evalue2.4e-67
Seed eggNOG ortholog2880.D8LBJ7
Model size471
KEGG koko:K20474
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.regulation of signal transduction involved in mitotic G2 DNA damage checkpoint
EggNOG OGsKOG2218@1,KOG2218@2759
Cds size468
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.400639-CDS-Ecto-sp13_S_contig12161:3953..41531681462646.400639-CDS-Ecto-sp13_S_contig12161:3953..4153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12161 3954..4153 -
1681462646.4120963-CDS-Ecto-sp13_S_contig12161:4597..47211681462646.4120963-CDS-Ecto-sp13_S_contig12161:4597..4721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12161 4598..4721 -
1681462646.4211626-CDS-Ecto-sp13_S_contig12161:4899..50431681462646.4211626-CDS-Ecto-sp13_S_contig12161:4899..5043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12161 4900..5043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12161.1825.1prot_Ecto-sp13_S_contig12161.1825.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12161 3954..5043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12161.1825.1

>prot_Ecto-sp13_S_contig12161.1825.1 ID=prot_Ecto-sp13_S_contig12161.1825.1|Name=mRNA_Ecto-sp13_S_contig12161.1825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
SPIGRWRGYCLAMASCAYVCAVLRESEDDMLFADMAETAAAAWAAASEVS
GEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGV
QGSIIGPTHAISAALTSLKGAARRVRKGASGNRHNGHDSGSGGAGTAAAV
MMVGEG
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mRNA from alignment at Ecto-sp13_S_contig12161:3953..5043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12161.1825.1 ID=mRNA_Ecto-sp13_S_contig12161.1825.1|Name=mRNA_Ecto-sp13_S_contig12161.1825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1091bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12161:3953..5043- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCCATCGGCCGCTGGAGGGGCTACTGCTTGGCCATGGCGTCGTGCGC
CTACGTTTGCGCCGTGCTTCGCGAGTCTGAGGACGACATGCTCTTCGCCG
ACATGGCCGAAACGGCGGCGGCTGCCTGGGCCGCGGCGAGCGAGGTGCGT
CGTGGATGCTATGTGTCGATTCGCTTCCCCCCACCCCATGTAAAATCCGA
AACGTATCCGCGGGGTGCAGGGGTTGGCGAAACCTTCGCGATGACGAAAG
TGCCTTTTTGTTTCATGTATCATGTGTATTGCTGATGTGTTTGTTTTGTT
TGTTTTCCTTTTTTTTTTTTAGGTGTCCGGTGAAGGGCGAGCGGCAAGGC
CTTCCTCGTCCCTGGGGTCTGTGGGGAACGTCGTCGGCGCGGCGGTAGGG
GGCGTGTCCCACGCTGTCACCGAACTGGCGACAACGGCAGAGACAGGTTG
GTCGCCCTTTCTTTCTCTCTCTGTCTCTCTTTCTCTCCCTCTTTCTCTCT
CTCTTCTCTTCTCTCTACCTCCCGCTGACTTTTGCGCATGTGCATGCAGA
CTTTCGCTGCTTGAATGAAATACCCCGACACTGTTTTTTTCGTCTGGTTT
TCGGCAGTTTCTCTGCACAGGCCGTGTATCGGGACGACGCACGCACACGC
AGTGGTGCGGCGATATCGGTGACATTTCATCACTAAGGGTCAATTCACGG
CGTGATATCGTACGGCCAACCGTGCCACAGAGAGCGCGATGAGGTCCCCG
TCATGTCGATCAGTACCGCGACTGTTTTCAACGGCAAAAGCCACACCCAT
CAACCAAACCCGAACCCTCGAGAGTTAAACTTCGGGAAATCCCCCCCCCC
GCGCTACCTACGTACCCACTTCAAACCGTACCCCCTCCAGCCACTGCGGG
TGTCGCGCGTGCCGTCGGGGTGCAAGGTTCGATCATCGGCCCCACGCACG
CCATATCTGCTGCGCTCACGTCACTCAAGGGCGCCGCCCGCCGCGTCCGA
AAGGGCGCGTCCGGAAACCGCCACAACGGTCACGACAGCGGTAGCGGCGG
GGCTGGGACGGCAGCAGCGGTGATGATGGTAGGCGAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12161:3953..5043-

>mRNA_Ecto-sp13_S_contig12161.1825.1 ID=mRNA_Ecto-sp13_S_contig12161.1825.1|Name=mRNA_Ecto-sp13_S_contig12161.1825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12161:3953..5043- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCCATCGGCCGCTGGAGGGGCTACTGCTTGGCCATGGCGTCGTGCGC
CTACGTTTGCGCCGTGCTTCGCGAGTCTGAGGACGACATGCTCTTCGCCG
ACATGGCCGAAACGGCGGCGGCTGCCTGGGCCGCGGCGAGCGAGGTGTCC
GGTGAAGGGCGAGCGGCAAGGCCTTCCTCGTCCCTGGGGTCTGTGGGGAA
CGTCGTCGGCGCGGCGGTAGGGGGCGTGTCCCACGCTGTCACCGAACTGG
CGACAACGGCAGAGACAGCCACTGCGGGTGTCGCGCGTGCCGTCGGGGTG
CAAGGTTCGATCATCGGCCCCACGCACGCCATATCTGCTGCGCTCACGTC
ACTCAAGGGCGCCGCCCGCCGCGTCCGAAAGGGCGCGTCCGGAAACCGCC
ACAACGGTCACGACAGCGGTAGCGGCGGGGCTGGGACGGCAGCAGCGGTG
ATGATGGTAGGCGAGGGG
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