mRNA_Ecto-sp13_S_contig714.18248.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig714.18248.1
Unique NamemRNA_Ecto-sp13_S_contig714.18248.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig714.18248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig714contigEcto-sp13_S_contig714:21780..22303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size524
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.5517778-UTR-Ecto-sp13_S_contig714:21779..217981681463979.5517778-UTR-Ecto-sp13_S_contig714:21779..21798Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig714 21780..21798 +
1681463979.5731502-UTR-Ecto-sp13_S_contig714:22122..223031681463979.5731502-UTR-Ecto-sp13_S_contig714:22122..22303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig714 22123..22303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.562574-CDS-Ecto-sp13_S_contig714:21798..221221681463979.562574-CDS-Ecto-sp13_S_contig714:21798..22122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig714 21799..22122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig714.18248.1prot_Ecto-sp13_S_contig714.18248.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig714 21799..22122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig714.18248.1

>prot_Ecto-sp13_S_contig714.18248.1 ID=prot_Ecto-sp13_S_contig714.18248.1|Name=mRNA_Ecto-sp13_S_contig714.18248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MKIESGSEGFLNSSNIKSQSLCKVEKLRFSIFLFHVKTYNSCLNSRLEKF
QISAGGRASGITKTLSTNRLITKRHELRTDGAHEGHRAFDSHDGPMPAAC
QARVPKM*
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mRNA from alignment at Ecto-sp13_S_contig714:21780..22303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig714.18248.1 ID=mRNA_Ecto-sp13_S_contig714.18248.1|Name=mRNA_Ecto-sp13_S_contig714.18248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig714:21780..22303+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCCGGGAAATTGATTCCATGAAGATCGAGTCTGGATCAGAAGGTTTCC
TCAACTCGAGCAATATAAAGTCGCAATCGCTTTGCAAAGTTGAGAAACTC
AGATTTTCAATTTTCCTTTTCCACGTGAAGACCTACAACAGTTGTTTGAA
TTCGCGACTTGAGAAATTCCAAATCTCGGCGGGGGGGAGGGCATCGGGCA
TCACAAAGACGCTCTCTACAAATAGACTAATCACAAAGCGACACGAACTG
CGGACGGATGGCGCTCATGAAGGGCATCGAGCGTTCGATTCTCATGACGG
TCCGATGCCGGCCGCTTGTCAGGCGCGTGTACCAAAAATGTAATCAACGG
AGAGGTCAGACGGCGTGTTTGAGGCCGGAACTCGTCAACAAAAAGATCAA
CATCTCGGTCGCTAGAGCACATCTCAAGCTGTAATCAGGAAGGATGTGAC
CTCCTAATATGCTTTAGTTCGGATGGGCGTGGATTAGTGGTCAGTCAACA
GGGAGCAGCGTCGGCCGTGTGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig714:21780..22303+

>mRNA_Ecto-sp13_S_contig714.18248.1 ID=mRNA_Ecto-sp13_S_contig714.18248.1|Name=mRNA_Ecto-sp13_S_contig714.18248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig714:21780..22303+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATCGAGTCTGGATCAGAAGGTTTCCTCAACTCGAGCAATATAAA
GTCGCAATCGCTTTGCAAAGTTGAGAAACTCAGATTTTCAATTTTCCTTT
TCCACGTGAAGACCTACAACAGTTGTTTGAATTCGCGACTTGAGAAATTC
CAAATCTCGGCGGGGGGGAGGGCATCGGGCATCACAAAGACGCTCTCTAC
AAATAGACTAATCACAAAGCGACACGAACTGCGGACGGATGGCGCTCATG
AAGGGCATCGAGCGTTCGATTCTCATGACGGTCCGATGCCGGCCGCTTGT
CAGGCGCGTGTACCAAAAATGTAA
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