mRNA_Ecto-sp13_S_contig7139.18245.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7139.18245.1
Unique NamemRNA_Ecto-sp13_S_contig7139.18245.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: D7G9C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C8_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.910e-44
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1
Query:   52 MDDKCSGRNGKLECCTEVYPYVCRDPAPDAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            MDDKC GR+GKL+CCTEV+P+VCR+P P APAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM
Sbjct:    1 MDDKCLGRSGKLKCCTEVFPHVCRNPDPGAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 72          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.410e-29
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   31 LNCPCDPMDDKCSGRNGKLECCTEVYPYVCRDPAPDAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            L+CPCD  DD+C  + G L+CC E  P VC+DP  +    RACGDPHMTGFLGQKFDFTGEDGGYYA+ISDFPN+HMNM
Sbjct:   51 LHCPCD-RDDQC--KTG-LKCCDETDPKVCKDPT-ETSGPRACGDPHMTGFLGQKFDFTGEDGGYYALISDFPNMHMNM 124          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.120e-14
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   64 CSGRNGKLECCTEVYPYVCRDPA-----PDAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            C+      +C T+  P  C +       P    A ACGDPHMTGFLGQKFDF G+DG +YAV+SD P+L +NM
Sbjct:  102 CTEATQDTDCPTDEKPICCPETGLCSHEPTDDDAGACGDPHMTGFLGQKFDFVGQDGEWYAVVSDMPDLEVNM 174          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.730e-13
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   88 ECCTEVYPYVCRDPAPDAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            ECC  +   VC    P  P A  CGDPHMTGF GQKFDFTG DG +Y +ISD P++H+NM
Sbjct:  760 ECC--LLKLVCEVADPTDPTA--CGDPHMTGFHGQKFDFTGNDGQWYCLISDLPSMHLNM 815          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.960e-13
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   10 CGGSGLGLNCPCDPMDDKCSGRNGKLECCTEVYPYVCRDPAPDAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            CG   LGLN  C   +  C   +G + C  + Y  V  D + D      CGDPHMTGFLGQKFDFTGEDGG+Y+VI+D  N+++NM
Sbjct:  273 CGTVTLGLNPTCSCGESGCP--DGLICCEKKDYCDVFGDESVDGVI---CGDPHMTGFLGQKFDFTGEDGGWYSVIAD-SNMNVNM 352          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.110e-12
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  115 VCRDPAPDAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            VC  P P  P A  CGDPHMTGF GQKFDFTG+DG +Y +ISD P++++NM
Sbjct:   43 VCELPLPTDPTA--CGDPHMTGFHGQKFDFTGDDGEWYCLISDLPSMNLNM 91          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.290e-12
Identity = 44/92 (47.83%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   16 GSGLGLNCPCDPMDDKCSGRNGKL--------ECCTEVYPYVCRDPAPDAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            GSG G +C  DP  D      G +        E CT V   VC  P    P A   GDPHMTGF GQKFDFTG DG +Y +ISD P++H+NM
Sbjct:  546 GSGTGFDC-LDPASDCVKEPTGCVDDGDCTLPEECTLVK-LVCEVPILTDPTAG--GDPHMTGFHGQKFDFTGNDGQWYCLISDLPSMHLNM 633          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.990e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1
Query:  142 PAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            P     G PHMTGFLGQKFDFTGEDGG+Y++I+D  N+++NM
Sbjct:    3 PVFSLSGGPHMTGFLGQKFDFTGEDGGWYSIIAD-SNMNVNM 43          
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.790e-8
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  172 MTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 267
            MTGF GQKFDFTG+DGG+Y+V SD P +H+NM
Sbjct:    1 MTGFRGQKFDFTGQDGGWYSVHSDMPRIHLNM 32          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7139.18245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G9C8_ECTSI2.910e-4488.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW46_9PHAE7.410e-2969.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE7.120e-1449.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE2.730e-1358.33LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5KVF3_9PHAE4.960e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE1.110e-1262.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRC1_9PHAE3.290e-1247.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Y7_9PHAE4.990e-964.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W0_9PHAE6.790e-871.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7139contigEcto-sp13_S_contig7139:216..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004500.1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.502268-CDS-Ecto-sp13_S_contig7139:215..3221681463979.502268-CDS-Ecto-sp13_S_contig7139:215..322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7139 216..322 -
1681463979.5161228-CDS-Ecto-sp13_S_contig7139:771..9311681463979.5161228-CDS-Ecto-sp13_S_contig7139:771..931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7139 772..931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7139.18245.1prot_Ecto-sp13_S_contig7139.18245.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7139 216..931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7139.18245.1

>prot_Ecto-sp13_S_contig7139.18245.1 ID=prot_Ecto-sp13_S_contig7139.18245.1|Name=mRNA_Ecto-sp13_S_contig7139.18245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
GNSCGGSGLGLNCPCDPMDDKCSGRNGKLECCTEVYPYVCRDPAPDAPAA
RACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM
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mRNA from alignment at Ecto-sp13_S_contig7139:216..931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7139.18245.1 ID=mRNA_Ecto-sp13_S_contig7139.18245.1|Name=mRNA_Ecto-sp13_S_contig7139.18245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7139:216..931- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACAGCTGTGGTGGTAGCGGCCTGGGTCTAAATTGCCCGTGCGATCC GATGGACGACAAGTGTTCAGGTCGCAATGGAAAACTGGAGTGTTGCACTG AAGTATACCCCTACGTGTGCAGGGATCCTGCTCCAGACGCTCCCGCAGCA CGCGCCTGCGGTGAGTTTACGCGATCCGATATCGTGCGGAAGCTGTTGAA AGACCGTGCTGCTACGTGCTCCGTAGTTGCCACCACATTCGTTCGTGGTT GACTCGCTTTGTGCTCTGGCCCGGGGAAGTTTCACGTGGTGCTCTTGCGT GCAGCTACATTGGTAGATCTGTATAGGATGCAGAATCACCACCACTGCTG TCAACAAGTCCTGGGTCCCGAGGGGTCCTGGTCTTGTCAGCACGTTGCCT GGGCCGTTCGCATTGTAAATGCAATTGACCGTGTGAACCGAAAATAGCTA GCGCTGAATGAAGTCTCTCACGGTTTGAACGGCTCGCCGCTGGCTTATAC TTGGTCGACTGCACTTATTCATCCATCCCATAAACGTTGGAAACATGCAA AACTTGAACACAACAGAGGGTCTTATACCTGTACCCCCCTGACGGCATTG TCCGCGTAGGGGACCCGCACATGACCGGCTTCCTTGGCCAAAAGTTCGAT TTCACGGGAGAGGACGGCGGTTACTACGCGGTCATCAGCGACTTTCCGAA CTTACACATGAATATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7139:216..931-

>mRNA_Ecto-sp13_S_contig7139.18245.1 ID=mRNA_Ecto-sp13_S_contig7139.18245.1|Name=mRNA_Ecto-sp13_S_contig7139.18245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7139:216..931- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACAGCTGTGGTGGTAGCGGCCTGGGTCTAAATTGCCCGTGCGATCC
GATGGACGACAAGTGTTCAGGTCGCAATGGAAAACTGGAGTGTTGCACTG
AAGTATACCCCTACGTGTGCAGGGATCCTGCTCCAGACGCTCCCGCAGCA
CGCGCCTGCGGGGACCCGCACATGACCGGCTTCCTTGGCCAAAAGTTCGA
TTTCACGGGAGAGGACGGCGGTTACTACGCGGTCATCAGCGACTTTCCGA
ACTTACACATGAATATG
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