mRNA_Ecto-sp13_S_contig71384.18244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71384.18244.1
Unique NamemRNA_Ecto-sp13_S_contig71384.18244.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.360e-28
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLAKILTYHCKTHGLGYKQ 174
            LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLA+ILTYHCKTHGLGYKQ
Sbjct:   43 LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLARILTYHCKTHGLGYKQ 100
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: A0A7S2W2Q6_9STRA (TBC1 domain family member 23 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W2Q6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.480e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLAKILTYHCKTHGLGYKQ 174
            LD +I  T  DLENQRV+RVD ERTR  L +F+ P ++ L++K+LT++CK   + YKQ
Sbjct:  143 LDDSIRDTKQDLENQRVIRVDAERTRADLAEFRTPEMQLLVSKLLTFYCKRKNIKYKQ 200
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: A0A2R5GE11_9STRA (TBC1 domain family member 23 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GE11_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.780e-8
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLAKILTYHCKTHGLGYKQ 174
            LD +I  T  DLENQRV+RVD +RTR  ++ F+   ++ L++++LT++CK  G+ YKQ
Sbjct:  911 LDDSIRDTKQDLENQRVIRVDAQRTRADVEIFRTEEMQLLVSRLLTFYCKRKGIKYKQ 968
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: A0A1R2AW83_9CILI (Rab-GAP TBC domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AW83_9CILI)

HSP 1 Score: 50.4 bits (119), Expect = 1.060e-5
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   16 LSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLAKILTYHCKTHGLGYKQ 174
            L T+L+L NQRV+ +DV RTR   D FK P  K LL ++LTY+CKT  + YKQ
Sbjct:   23 LETELNLPNQRVINIDVLRTRS--DLFK-PNEKILLEQLLTYYCKTEKVTYKQ 72
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: A0A3P3Y0X7_PLABS (TBC1 domain family member 23 n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y0X7_PLABS)

HSP 1 Score: 49.7 bits (117), Expect = 1.990e-5
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 DAAILSTDLDLENQRVVRVDVERTRPALDQFKRPR-VKNLLAKILTYHCKTHGLGYKQ 174
            D  +   D DL NQRV+R+D++RTRP +D F+    V + L  +LT  CK H + YKQ
Sbjct:  173 DVQLPECDFDLYNQRVIRMDIQRTRPDVDFFRNDSAVGDALEMMLTLFCKRHLINYKQ 230
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: A0A0H5RA84_9EUKA (TBC1 domain family member 23 n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RA84_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 2.730e-5
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 LDAAILSTDLDLENQRVVRVDVERTRPALDQFK-RPRVKNLLAKILTYHCKTHGLGYKQ 174
            ++ A+     DL NQRV+R+D++RTRP +D F+    V+  L  ILT  CK H + YKQ
Sbjct:  165 INIALKDYTFDLYNQRVIRMDIQRTRPDVDYFRDNDDVREALEIILTVFCKRHLINYKQ 223
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: A0A482R8S9_9EURY (TBC domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R8S9_9EURY)

HSP 1 Score: 48.1 bits (113), Expect = 6.750e-5
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLAKILTYHCKTHGLG 165
            ++AAI S  LDL NQRVVR+D ERTR    +FK   +   + ++LTY+CK    G
Sbjct:    9 VNAAIASVGLDLPNQRVVRMDAERTRTDQAEFKDAAMLQRVQRLLTYYCKCGYAG 63
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BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Match: A0A813B5J5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B5J5_9DINO)

HSP 1 Score: 47.0 bits (110), Expect = 7.980e-5
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLAKILTYHCKTHGLGYKQ 174
            ++  I +T  DL NQRV+RVD ERTR     FK   ++  + +++TY+ K   + YKQ
Sbjct:   35 MNQRIAATKQDLPNQRVIRVDAERTRAGHPLFKTDEMRARIRRVMTYYVKNRSVVYKQ 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71384.18244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FKI7_ECTSI1.360e-2898.28Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2W2Q6_9STRA6.480e-1051.72TBC1 domain family member 23 n=1 Tax=labyrinthulid... [more]
A0A2R5GE11_9STRA2.780e-846.55TBC1 domain family member 23 n=1 Tax=Hondaea ferme... [more]
A0A1R2AW83_9CILI1.060e-554.72Rab-GAP TBC domain-containing protein n=1 Tax=Sten... [more]
A0A3P3Y0X7_PLABS1.990e-544.83TBC1 domain family member 23 n=2 Tax=Plasmodiophor... [more]
A0A0H5RA84_9EUKA2.730e-544.07TBC1 domain family member 23 n=1 Tax=Spongospora s... [more]
A0A482R8S9_9EURY6.750e-547.27TBC domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A813B5J5_9DINO7.980e-539.66Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71384contigEcto-sp13_S_contig71384:1..174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score118.2
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D7FKI7
Preferred nameTBC1D23
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
Exons1
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
Cds size174
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.4663734-CDS-Ecto-sp13_S_contig71384:0..1741681463979.4663734-CDS-Ecto-sp13_S_contig71384:0..174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71384 1..174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71384.18244.1prot_Ecto-sp13_S_contig71384.18244.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71384 1..174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71384.18244.1

>prot_Ecto-sp13_S_contig71384.18244.1 ID=prot_Ecto-sp13_S_contig71384.18244.1|Name=mRNA_Ecto-sp13_S_contig71384.18244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
LDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLAKILTYHCK
THGLGYKQ
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mRNA from alignment at Ecto-sp13_S_contig71384:1..174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71384.18244.1 ID=mRNA_Ecto-sp13_S_contig71384.18244.1|Name=mRNA_Ecto-sp13_S_contig71384.18244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71384:1..174+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGACGCCGCGATTTTGTCGACAGATCTCGACCTGGAGAATCAACGGGT
AGTGCGGGTTGACGTCGAGAGAACGAGGCCCGCACTGGACCAGTTCAAGA
GACCGAGGGTGAAGAACCTGCTGGCAAAGATCCTTACGTACCACTGCAAG
ACGCACGGCTTGGGGTATAAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71384:1..174+

>mRNA_Ecto-sp13_S_contig71384.18244.1 ID=mRNA_Ecto-sp13_S_contig71384.18244.1|Name=mRNA_Ecto-sp13_S_contig71384.18244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71384:1..174+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGACGCCGCGATTTTGTCGACAGATCTCGACCTGGAGAATCAACGGGT
AGTGCGGGTTGACGTCGAGAGAACGAGGCCCGCACTGGACCAGTTCAAGA
GACCGAGGGTGAAGAACCTGCTGGCAAAGATCCTTACGTACCACTGCAAG
ACGCACGGCTTGGGGTATAAGCAG
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