mRNA_Ecto-sp13_S_contig7138.18243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7138.18243.1
Unique NamemRNA_Ecto-sp13_S_contig7138.18243.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7138.18243.1 vs. uniprot
Match: D7G857_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G857_ECTSI)

HSP 1 Score: 404 bits (1038), Expect = 4.010e-136
Identity = 197/230 (85.65%), Postives = 203/230 (88.26%), Query Frame = 2 
Query:    2 SGHTSRLMGWLHQFDKNLRFKYRIHEVLDASASGVGDLPPKVVGWEVRVVESDSNWNANLHMHSRSFERFKFDLEFLELEYEDDPTDLHTLFYLGITKFAYIESLLGKGTHKKTPELQAFISDGMSYFRQAVDLHGEIPNSELVWGSKRWLSYGYHYFVGDSEEAEKMYKSCIEYDRARIDCLVFLSRLHLDNNALDAAWDTAKEGLVHRPPAGRVMTYFYTFECFLPTQ 691
            SGHTSRLMGWLH+FDKNLRFKYR                      +VRVVESDSNWNA     SRSFERFKFDLEFLELEYEDDPTDLHTLFYLGITKFAYIESLLGKGTH+KTPELQAFI+DGMSYFRQAVDLHGEIPNSELVWGSKRWLSYGYHYFVGDSEEAEKMYKSCIEYDRARIDCLVFLSRL+LDNNALDAAWDTAKEGLVHRPPAG+VMTYFYTFECFLPTQ
Sbjct:  202 SGHTSRLMGWLHRFDKNLRFKYR----------------------QVRVVESDSNWNAXXXXXSRSFERFKFDLEFLELEYEDDPTDLHTLFYLGITKFAYIESLLGKGTHEKTPELQAFITDGMSYFRQAVDLHGEIPNSELVWGSKRWLSYGYHYFVGDSEEAEKMYKSCIEYDRARIDCLVFLSRLYLDNNALDAAWDTAKEGLVHRPPAGQVMTYFYTFECFLPTQ 409
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BLAST of mRNA_Ecto-sp13_S_contig7138.18243.1 vs. uniprot
Match: A0A6H5JUC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC4_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 5.220e-65
Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = 2 
Query:  686 TQAANVISKRIIASESDDLGNDSLEGLLTMGWYLVRHHRTHCTDGVMVDTPEDIDRLESWFEEAIAREALDVAEIKRLTLLSDEESLLALLLRTWGTGTKSSTVWHPQVQQQPQVTQVQGQH 1051
            ++AANVISKRIIASESDDLGNDSLEGLLTMGWYLVRHHRTHCTDGVMVDTPEDIDRLESWFEEAIAREALDVAEIKRLTLLS EESLLALLLRTWGTGT+SSTVWHPQVQQ+PQ TQVQ Q+
Sbjct:    5 SKAANVISKRIIASESDDLGNDSLEGLLTMGWYLVRHHRTHCTDGVMVDTPEDIDRLESWFEEAIAREALDVAEIKRLTLLSGEESLLALLLRTWGTGTRSSTVWHPQVQQRPQGTQVQRQN 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7138.18243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G857_ECTSI4.010e-13685.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUC4_9PHAE5.220e-6593.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7138contigEcto-sp13_S_contig7138:2291..6589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score390.2
Seed ortholog evalue1.1e-105
Seed eggNOG ortholog2880.D7G857
Model size1125
Hectar predicted targeting categoryother localisation
Exons8
EggNOG OGs2F0SW@1,2T1WJ@2759
Cds size1101
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7138.18243.1prot_Ecto-sp13_S_contig7138.18243.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7138 2291..6567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.3106184-CDS-Ecto-sp13_S_contig7138:2290..26331681463979.3106184-CDS-Ecto-sp13_S_contig7138:2290..2633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 2291..2633 -
1681463979.3253393-CDS-Ecto-sp13_S_contig7138:2904..29931681463979.3253393-CDS-Ecto-sp13_S_contig7138:2904..2993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 2905..2993 -
1681463979.3400822-CDS-Ecto-sp13_S_contig7138:3465..35781681463979.3400822-CDS-Ecto-sp13_S_contig7138:3465..3578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 3466..3578 -
1681463979.3556917-CDS-Ecto-sp13_S_contig7138:4196..43471681463979.3556917-CDS-Ecto-sp13_S_contig7138:4196..4347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 4197..4347 -
1681463979.3673444-CDS-Ecto-sp13_S_contig7138:4758..49011681463979.3673444-CDS-Ecto-sp13_S_contig7138:4758..4901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 4759..4901 -
1681463979.3851385-CDS-Ecto-sp13_S_contig7138:5329..54081681463979.3851385-CDS-Ecto-sp13_S_contig7138:5329..5408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 5330..5408 -
1681463979.4017296-CDS-Ecto-sp13_S_contig7138:5954..60901681463979.4017296-CDS-Ecto-sp13_S_contig7138:5954..6090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 5955..6090 -
1681463979.4176712-CDS-Ecto-sp13_S_contig7138:6520..65671681463979.4176712-CDS-Ecto-sp13_S_contig7138:6520..6567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7138 6521..6567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.4321108-UTR-Ecto-sp13_S_contig7138:6567..65891681463979.4321108-UTR-Ecto-sp13_S_contig7138:6567..6589Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7138 6568..6589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7138.18243.1

>prot_Ecto-sp13_S_contig7138.18243.1 ID=prot_Ecto-sp13_S_contig7138.18243.1|Name=mRNA_Ecto-sp13_S_contig7138.18243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MGWLHQFDKNLRFKYRIHEVLDASASGVGDLPPKVVGWEVRVVESDSNWN
ANLHMHSRSFERFKFDLEFLELEYEDDPTDLHTLFYLGITKFAYIESLLG
KGTHKKTPELQAFISDGMSYFRQAVDLHGEIPNSELVWGSKRWLSYGYHY
FVGDSEEAEKMYKSCIEYDRARIDCLVFLSRLHLDNNALDAAWDTAKEGL
VHRPPAGRVMTYFYTFECFLPTQAANVISKRIIASESDDLGNDSLEGLLT
MGWYLVRHHRTHCTDGVMVDTPEDIDRLESWFEEAIAREALDVAEIKRLT
LLSDEESLLALLLRTWGTGTKSSTVWHPQVQQQPQVTQVQGQHEQNQEQH
EEQGEQYQQQQHQHHTE
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mRNA from alignment at Ecto-sp13_S_contig7138:2291..6589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7138.18243.1 ID=mRNA_Ecto-sp13_S_contig7138.18243.1|Name=mRNA_Ecto-sp13_S_contig7138.18243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4299bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7138:2291..6589- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGGGCACACCAGCCGGCTCATGGGGTGGCTGCATCAGTTCGACAAGA
ACCTGAGATTCAAGTACAGGTAGGTGCGGGGAAGCGTGTCTAGCCGGTTC
TTCGTACACTGTCGAAATGTTCAGTGAGGTATTTGTAGAAAATCGACCTT
GCACGGTGGTTTCATCACTTGAGGTGAGACTGCTTGCGAACGCCAGTTTC
CTAGCTGCTTGCGGCAACGGTGCGGCTTTCAGGGGAAAGCGTTCCCCATG
CCGAACGGGGCTTACCCTACCGGCGCCGTTCTTCGCATCTTAGAACGCTT
ACTTAGACAATAAATATGTTGTTTGTGAAGTATTGAGCGTAGCAACAGCG
GTCGCACCACGTGCACGTGGCCACTACATTACCATTAAACCGAAGATCAC
AGATACCTTGAATGCATGTCTCCAATGGTCGTATGCACACACGGGATCTG
TTCTCGCACAAAAACAACTCCGCAACATGACGAACAATCATCCAATCAGG
ATCCACGAGGTACTGGATGCCTCTGCTTCTGGTGTGGGCGATTTACCGCC
GAAAGTCGTCGGGTGGGAGGTGCGAGTGGTCGAGAGCGACTCCAACTGGA
ACGCAAACCTTCACATGCACAGCCGGAGCTTCGAGGTGGGCCATGTCCAG
TAGTTGCGCTCGCCCTTCACTCAGAACATCAGTGGGTCTTTGTCGCGAGG
TTTGAACATAAGAAACAGTATTCAGTCTTTCTTGTAGAATGCTCCATTTG
CGTTGAAAAATAGTTGGACGTGTTGTGCCGGTCTTGATGGACTTTGGTGA
TGATGCATGCTCAAGCGACAGTAGTGCTGTTTTGCGCAAACCGCTTGGGG
CCAGATTTTCCAGATAGGTCAACGCATTCGGGTGTTGGATGTTGTCTACC
CATTCACTTTGTAGGCAAGAAATCCTCACACCTGTCACCGGCAGGCCATT
CCGCAAACAAACGAGAATCTCAAATGTATTTGCCGACACCATGAGCGACG
GCGTTGTCCTCTCATCCATCGGTGTATCATTTTCGTTTCACCCGTTTCGT
GGTCATAAGCAAAACACGAAGCACGACATACAGATGAAGCATACATATCC
CGTTTGGACGCACTCATAACCAACCCCGGGTGTTTTCTCATTAATCCTGT
CACCTTCATCCGTACGCGCGTTCCTTGTCAGCGTTTCAAGTTTGACCTCG
AATTCCTTGAACTGGAGTATGAAGACGACCCGACCGACCTCCACACGCTC
TTCTACCTTGGTGAGTGAACGACAAGTTAAAGAGCTACCAGTGTCCAGTT
CTCGCATCAGATCAGCCACTTCACCACATGCAGCTGCCGTTCCATAAGGC
TTGGTACCAATGATCGGTACCCCTGTCGATAAAGAGCATTATGCGCACAT
ATAAACGGGAACAGGCTGCACGGTGACGGCGGCGTCAGTCGATTCGATCG
AGGGCATTCGGAGTGCCGCGAGTAGCAGAATGGAGCTGCGCGAAAGCGTG
ACCGATGACGAAGAGAGACACACATGTTGTCGGCAGTAGCGCAGCGAAAA
CCCTGAACATCTGAAAGCATCGTAACTCGACCCTTGGAAAAGACAAAAAC
AGAATGCACATTGACCTCTATCTGAAGGGGCACAACCCAATCCCGAACGC
ACGGTATTCTGCTGTATTTTGACGTTTCTACGGGGCAGGCATCACGAAAT
TCGCGTACATTGAATCTCTCTTGGGCAAAGGCACACACAAGAAAACGCCG
GAGTTACAGGCCTTCATCTCGGACGGAATGTCCTACTTCCGCCAGGCTGT
TGATCTGCACGGGGAAATTCCGAATTCCGAGGTGCGTCCGTGAATGTGGT
TGTGTCGAAGGAGAGCGCTGGCGCGTGTGATGAAAGCGTTAAGATATTAG
TGCGAGGAGCACAATTGCGGTCGCAGTGGGTTTCTGTCGCCACCATCTAC
CATGCGGAACCATCCGTCCAAACACCCCAAAATCTCGAAACCAAAATCCT
GGCAACACGCGGCCACCGCGTCGTCAGAAGCATAGGCAGTACAAAGCGGT
GTTGCAGTGTGCATGCCAACCATGCCCATTTTGTACCTTACCGCCGATAG
CAATTTCTTTGGAGGCGAACCATATTCTGACGCGAAATGTGCGCCACGAT
CGCTTGATTTGTCCAATGAGCCCTCGAGTGCCCGCTCGCGCTTTGCTGCA
CGAACCCACACAACACGAACACCCGCTCGTCGTGTGTTTTAGCTCGTGTG
GGGATCAAAGCGCTGGCTCTCGTACGGGTATCACTACTTCGTCGGCGACA
GCGAGGAGGCGGAGAAGATGTACAAATCATGCATCGAGTACGACCGCGCC
CGCATCGACTGCTTGGTCTTCCTCAGCCGCCTGCACCTTGACAGTAAGCT
TCTCCACTGCACTGCATTGTCCTGCGTCAAATATCGTGTTGTAGGACCGA
AATGAATCGGACTACAGTATCCTTTCGCGCGTTACACTGTAGGTTTTACC
GGCCTCGTCCGTCGGAGGACGATGAGGTTATGAGTCGCGGCGTTCGATGT
CTAGCCTTGCGACTCCGCGCCAGACGTTATTTCGTTCGTTGCGCGACCAT
GTGTTCGCATTCAGGCCGCGGGTGAACGAGACACAACACAGGCACGGTGC
TTACAAACCTCAGCAGGCAGCATTTGAGAAATGCGCAGTAGATCGGAATA
CCACTAGACATGTAGGGTTCGGGGTTTTGTTGCTATTTTTTGTCTTCATA
CTCTGTCGACATTGGAGTCGAAGATGATCTCCTGCTTGTTGAGGGACATT
ACAGAGCGCACCACAATGGAAACATCTGTAATTATATCGCGAAACTAGAG
GCTTTCATGAAACCGCTACGAATCTATTATTCTGTACGAAGCGCCTTCTG
GCACCAACCTCAACGCGGTCGACCTTGACAATTTGAGTTTTCCTCTTTCA
AGCTGAACCCGAAGGACGTTGAGCCCGTACTGCCCCATCGTCTCGACTTC
CTTCTCCTCAGATAACGCCCTCGACGCTGCTTGGGACACGGCGAAAGAGG
GGCTTGTGCACCGACCCCCGGCCGGTCGGGTCATGACCTACTTCTACACC
TTCGAGTGTTTCTTACCGACCCAGGTGTGGGACGATCTTCACCCTCCTAT
GCTCGCACCACACACGCTTCGGCGTAAGATTTGATGCGTATTTTTGTGCA
GATATCTTAAAGCTCTCCCGTTAGATCACACCATTAACGTCACTTAAGTC
GACCCGTGCTCCCGAATGAGTCAAATGCAATCAATCTACAGCGGTAGATG
CTGGTGATTTCATCCTTTCCGTAGGCATGCAGAAGCGTGGAACGTGAAGG
CACCTGAGAAAAACCTCGTTCATAACGTTCTGGAATAAGTCAGCAATGTG
TGCGTGTCTTTTACCACAGATGGGGAATTCCGTTTCGGCTGTGTCGTTCA
TTGCGTCCTCGAGCTGTCGTTCATTGCAGCCCTCGAGCACTCCACGCTGC
CATAAGATTAATCAAAAACATCGTCGTGTTCCCCTCCGCGCTGCGCATTT
GCTGCGAATGATTATGGTGATACGCTGAATGGATCCGAACTCGAAGGCGG
CCAACGTCATCTCGAAGAGGATTATTGCGTCAGAGTCGGACGACCTCGGC
AATGATTCGCTCGAGGGCTTACTTACGATGGGCTGGTAAGAGGACAACTA
TAACCAACAGAGCACACCAACCCCAGCGCACCAAGGAGCAGCTTGAGATC
GGAAGCAATGCTGACGTCTATGTTTCACAGAAGATACTCCCAACTTTTCT
CAAAGCAGTGTTCCTTCTACGCACAAACCAAGAGGGTGGGAGCCATGTAA
AAGAAGACCGGTTGCTCCATGAACCCCATCAAACGAAAATCGAGGAGTCG
CTGCATTCTTGAAACTTTACAAATCGTTCCCGGGGGGGCGGTTTTCACCG
TCACAGGTATCTTGTGCGCCACCACCGGACCCACTGCACGGACGGCGTCA
TGGTTGACACTCCGGAGGACATCGACCGCCTGGAGTCGTGGTTCGAAGAG
GCCATTGCACGGGAAGCATTGGATGTAGCGGAAATCAAACGCCTCACTTT
GCTCAGCGACGAAGAGTCTCTTTTGGCTCTATTGCTTCGGACGTGGGGGA
CTGGAACAAAATCTTCTACGGTATGGCATCCTCAAGTGCAGCAGCAACCG
CAAGTCACGCAAGTACAAGGACAACATGAGCAGAACCAAGAACAACACGA
AGAACAAGGAGAACAGTATCAGCAACAACAGCACCAGCACCACACCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7138:2291..6589-

>mRNA_Ecto-sp13_S_contig7138.18243.1 ID=mRNA_Ecto-sp13_S_contig7138.18243.1|Name=mRNA_Ecto-sp13_S_contig7138.18243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7138:2291..6589- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTGGCTGCATCAGTTCGACAAGAACCTGAGATTCAAGTACAGGAT
CCACGAGGTACTGGATGCCTCTGCTTCTGGTGTGGGCGATTTACCGCCGA
AAGTCGTCGGGTGGGAGGTGCGAGTGGTCGAGAGCGACTCCAACTGGAAC
GCAAACCTTCACATGCACAGCCGGAGCTTCGAGCGTTTCAAGTTTGACCT
CGAATTCCTTGAACTGGAGTATGAAGACGACCCGACCGACCTCCACACGC
TCTTCTACCTTGGCATCACGAAATTCGCGTACATTGAATCTCTCTTGGGC
AAAGGCACACACAAGAAAACGCCGGAGTTACAGGCCTTCATCTCGGACGG
AATGTCCTACTTCCGCCAGGCTGTTGATCTGCACGGGGAAATTCCGAATT
CCGAGCTCGTGTGGGGATCAAAGCGCTGGCTCTCGTACGGGTATCACTAC
TTCGTCGGCGACAGCGAGGAGGCGGAGAAGATGTACAAATCATGCATCGA
GTACGACCGCGCCCGCATCGACTGCTTGGTCTTCCTCAGCCGCCTGCACC
TTGACAATAACGCCCTCGACGCTGCTTGGGACACGGCGAAAGAGGGGCTT
GTGCACCGACCCCCGGCCGGTCGGGTCATGACCTACTTCTACACCTTCGA
GTGTTTCTTACCGACCCAGGCGGCCAACGTCATCTCGAAGAGGATTATTG
CGTCAGAGTCGGACGACCTCGGCAATGATTCGCTCGAGGGCTTACTTACG
ATGGGCTGGTATCTTGTGCGCCACCACCGGACCCACTGCACGGACGGCGT
CATGGTTGACACTCCGGAGGACATCGACCGCCTGGAGTCGTGGTTCGAAG
AGGCCATTGCACGGGAAGCATTGGATGTAGCGGAAATCAAACGCCTCACT
TTGCTCAGCGACGAAGAGTCTCTTTTGGCTCTATTGCTTCGGACGTGGGG
GACTGGAACAAAATCTTCTACGGTATGGCATCCTCAAGTGCAGCAGCAAC
CGCAAGTCACGCAAGTACAAGGACAACATGAGCAGAACCAAGAACAACAC
GAAGAACAAGGAGAACAGTATCAGCAACAACAGCACCAGCACCACACCGA
G
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