prot_Ecto-sp13_S_contig7133.18238.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7133.18238.1
Unique Nameprot_Ecto-sp13_S_contig7133.18238.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length359
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7133.18238.1 vs. uniprot
Match: A0A6H5K892_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K892_9PHAE)

HSP 1 Score: 466 bits (1200), Expect = 8.040e-157
Identity = 323/366 (88.25%), Postives = 328/366 (89.62%), Query Frame = 0 
Query:    1 MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----KPVLSEXXXXXXXXXXXXXXXXXXXXXXXSLAGSARLAGARSQQASGPGIGRSVGGGSSLPPGSELLESGFSAYGGSVVGFGGGWTGSGFGAGSSMLESIVQISHAGLSDNVRRESLLYDMSQRPARRFRAGEQKPPASEDGASAAEVDGGDDERGGRLSQRQPVDSEEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVEALSGIITSEDSGLESVGPTAPGRRRKAEGFPAAXXXXXXXHGSPPAMTPP---GEGSADSTRREGS 358
            MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     KPVLSE           XXXXXXXXXXXX LAG ARLAGARSQQASGPGIGRSVGGGSSLPPGSELLESGFSAY GSVVGFGGGWTGSGFGAGSSML+SIVQISHAGLSDNVRRESLLYDMSQRPARRFRAGEQK PAS+DGASAA+VDGGDDERGGRLSQRQP DSEEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVE LSGII SED+GLES GPTAPGRRRKAEGFPA XXXXXXX             GEG+ADSTRREGS
Sbjct:    1 MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPDSKPVLSEDYFTLARNQRHXXXXXXXXXXXXXLAGGARLAGARSQQASGPGIGRSVGGGSSLPPGSELLESGFSAYDGSVVGFGGGWTGSGFGAGSSMLDSIVQISHAGLSDNVRRESLLYDMSQRPARRFRAGEQKLPASKDGASAAQVDGGDDERGGRLSQRQPADSEEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVETLSGIIISEDNGLESAGPTAPGRRRKAEGFPAXXXXXXXXXXXXXXXXXXXXXGEGAADSTRREGS 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7133.18238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K892_9PHAE8.040e-15788.25APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7133contigEcto-sp13_S_contig7133:3823..4899 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7133.18238.1mRNA_Ecto-sp13_S_contig7133.18238.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7133 3823..4899 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7133.18238.1 ID=prot_Ecto-sp13_S_contig7133.18238.1|Name=mRNA_Ecto-sp13_S_contig7133.18238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=359bp
MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGGGGG
GSNGMKHSSPSSRQQGGGGARNGEESYVVLPDSKPVLSEDYFTLARNQHH
AGGGVAAAVASSSLAGSARLAGARSQQASGPGIGRSVGGGSSLPPGSELL
ESGFSAYGGSVVGFGGGWTGSGFGAGSSMLESIVQISHAGLSDNVRRESL
LYDMSQRPARRFRAGEQKPPASEDGASAAEVDGGDDERGGRLSQRQPVDS
EEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVEALSGI
ITSEDSGLESVGPTAPGRRRKAEGFPAAAAAAAAAHGSPPAMTPPGEGSA
DSTRREGSA
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