mRNA_Ecto-sp13_S_contig71272.18229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71272.18229.1
Unique NamemRNA_Ecto-sp13_S_contig71272.18229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71272.18229.1 vs. uniprot
Match: D8LQI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.590e-29
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   43 MPLADEAASKLLVKEGPDGSPKFDNPAVGDFQVLDALVEYPGSFDLKIIGVDDDTF 210
            MPLAD+AASKLL KEGPDGS KFDNPAVGDFQVLDALVEYPGSFDLKIIGVDDDTF
Sbjct:    1 MPLADKAASKLLAKEGPDGSSKFDNPAVGDFQVLDALVEYPGSFDLKIIGVDDDTF 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71272.18229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQI5_ECTSI1.590e-2994.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71272contigEcto-sp13_S_contig71272:1..689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463978.133542-CDS-Ecto-sp13_S_contig71272:0..511681463978.133542-CDS-Ecto-sp13_S_contig71272:0..51Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71272 1..51 -
1681463978.1448064-CDS-Ecto-sp13_S_contig71272:530..6891681463978.1448064-CDS-Ecto-sp13_S_contig71272:530..689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71272 531..689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71272.18229.1prot_Ecto-sp13_S_contig71272.18229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71272 1..689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71272.18229.1

>prot_Ecto-sp13_S_contig71272.18229.1 ID=prot_Ecto-sp13_S_contig71272.18229.1|Name=mRNA_Ecto-sp13_S_contig71272.18229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
PQDTGPAKRKARSLMPLADEAASKLLVKEGPDGSPKFDNPAVGDFQVLDA
LVEYPGSFDLKIIGVDDDTF
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mRNA from alignment at Ecto-sp13_S_contig71272:1..689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71272.18229.1 ID=mRNA_Ecto-sp13_S_contig71272.18229.1|Name=mRNA_Ecto-sp13_S_contig71272.18229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71272:1..689- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCAGGATACGGGACCAGCGAAGAGAAAGGCCAGATCATTGATGCCCCT
GGCGGACGAAGCGGCGTCTAAGCTGCTGGTGAAGGAGGGTCCAGACGGCA
GCCCCAAGTTCGATAACCCTGCTGTCGGCGACTTCCAGGTGCTGGACGCA
CTGGTTGAGGTAGGCTATACATGCTCATCCTGGTCGGCGCACTACCACCT
CGGCAAGTGCTGAAACATGTCACCCAAGCGCGGCACTTTTCCTCACGTTT
GGCGGGGATCATGTTTGGGAGCACCATGGGTGAGAGGGACTATCTCTTCG
TCATGGGGCTATTAGCAGCAGTGAGTGTGTGAGCCACGTGAAATGTTTGT
ACTACTTGCCGTTCCCCCCGTTGCGTGAATAAATACGCCTTCGGCTGGTA
GTTTCTCGTTTGCCGAGTCTTCCTTGCTACAACATCAGCAGTGCTGATCA
ATGTGCCCCACGACACGCCTTTTCCCATGTACATAACGTAACAACGGTAA
ACGGTACAGCTGCAAGTTTATGTTCTACCACCACAACCCGCACCCGTTTT
GCGCACGATTTTAATGGTTGGGTCATATCGACAAAATATAAAAATAATGA
TAGTTACTCATGTTTGCGCTGCCGGTGTGGATTCCCAGTACCCGGGTAGC
TTCGATCTCAAGATCATCGGCGTCGACGACGACACGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71272:1..689-

>mRNA_Ecto-sp13_S_contig71272.18229.1 ID=mRNA_Ecto-sp13_S_contig71272.18229.1|Name=mRNA_Ecto-sp13_S_contig71272.18229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71272:1..689- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCAGGATACGGGACCAGCGAAGAGAAAGGCCAGATCATTGATGCCCCT
GGCGGACGAAGCGGCGTCTAAGCTGCTGGTGAAGGAGGGTCCAGACGGCA
GCCCCAAGTTCGATAACCCTGCTGTCGGCGACTTCCAGGTGCTGGACGCA
CTGGTTGAGTACCCGGGTAGCTTCGATCTCAAGATCATCGGCGTCGACGA
CGACACGTTC
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