mRNA_Ecto-sp13_S_contig71269.18228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: D8LIX9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIX9_ECTSI) HSP 1 Score: 139 bits (350), Expect = 3.040e-37 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM
Sbjct: 364 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 427
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A836CDF7_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 8.350e-21 Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
YGRLGHA D E+ PR++++ RM+H+ + +AAG CS+A+ GHL++WGKLPNAPRGEATM
Sbjct: 354 YGRLGHAGSDNEMTPRVINMFERMSHVTIKTLAAGGACSMALATTGHLYFWGKLPNAPRGEATM 417
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S1GNS8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNS8_CYCTE) HSP 1 Score: 67.8 bits (164), Expect = 6.370e-12 Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
YG LGH Q E RPR+V VL +++ + AGA CS+ +TENGH++YWGK + GE+ M
Sbjct: 102 YGCLGHGVQADEYRPRVVGVLRSQKGVRLVRATAGASCSMVLTENGHIYYWGK--HRTIGESVM 163
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S3H2I8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2I8_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.120e-9 Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMV---------------DVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
YGRLGH E PR V V+ KV ++ G+ S+A+TE+ HL YWGK+ NAPRGEAT+
Sbjct: 197 YGRLGHNAAQDEFFPREVLAFSHFLPTQGGAKIQVVPVNAQKKVREIVCGSSFSIAVTESRHLAYWGKMSNAPRGEATV 275
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S2MCK2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MCK2_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.600e-8 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAG--CSLAITENGHLFYWGKLPNAPRGEATM 192
YG LGH Q E PR++ L + V A AG CS+ +T+NGH++YWGK A GEATM
Sbjct: 5 YGCLGHNVQADEYTPRLISALRGPLFASNSPVRAAAGGTCSMILTKNGHVYYWGKHKQA--GEATM 68
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A1E7FDL2_9STRA (RCC1/BLIP-II protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDL2_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.590e-8 Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
YG LGH Q E PR V L R + TKVAAG+ CSLA+T GH++YWG + EA M
Sbjct: 218 YGVLGHNRQKDEYYPRHVSSLQR--GMTFTKVAAGSNCSLALTNQGHVYYWGN--HRSNSEAVM 277
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S1Z9F5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9F5_TRICV) HSP 1 Score: 57.4 bits (137), Expect = 4.270e-8 Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAG--CSLAITENGHLFYWGKLPNAPRGEATM 192
YG LGH Q E RPR+V L AGAG CS+ +T NGH++YWG+ + GEATM
Sbjct: 132 YGCLGHGAQADEYRPRLVGTLRGPLFAANAPRTAGAGAQCSMVLTANGHVYYWGRHRSV--GEATM 195
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S4HXJ2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HXJ2_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAG--CSLAITENGHLFYWGKLPNAPRGEATM 192
YG LGH Q + PR+V L + V A AG CS+A+T NGH++YWGK + GEATM
Sbjct: 457 YGCLGHGVQADQYTPRLVATLRGPLFAANSPVRAAAGTQCSMALTANGHVYYWGKHRSV--GEATM 520
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S3Q3A3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3A3_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.760e-7 Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLAR--MTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
YG LGH Q E PR+++ L +VAAG CS+A+TENGH++Y GK + GEATM
Sbjct: 334 YGVLGHGVQKDEYTPRLLNPLTGPIFKSNSPVRVAAGTHCSMALTENGHVYYCGKHRSV--GEATM 397
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A6U3T4E5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T4E5_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7 Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 1
Query: 1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKV--AAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
YG LGH Q E PR++ L T V AAGA CS+ +T+NGH++YWGK EATM
Sbjct: 499 YGCLGHNVQADEYTPRLISALRGPLFASNTPVRAAAGAQCSMILTKNGHVYYWGKHRQGT--EATM 562 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig71269.18228.1 >prot_Ecto-sp13_S_contig71269.18228.1 ID=prot_Ecto-sp13_S_contig71269.18228.1|Name=mRNA_Ecto-sp13_S_contig71269.18228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYback to top mRNA from alignment at Ecto-sp13_S_contig71269:340..534+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig71269.18228.1 ID=mRNA_Ecto-sp13_S_contig71269.18228.1|Name=mRNA_Ecto-sp13_S_contig71269.18228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71269:340..534+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71269:340..534+ >mRNA_Ecto-sp13_S_contig71269.18228.1 ID=mRNA_Ecto-sp13_S_contig71269.18228.1|Name=mRNA_Ecto-sp13_S_contig71269.18228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71269:340..534+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |