mRNA_Ecto-sp13_S_contig71269.18228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71269.18228.1
Unique NamemRNA_Ecto-sp13_S_contig71269.18228.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: D8LIX9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIX9_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.040e-37
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
            YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM
Sbjct:  364 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 427          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A836CDF7_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.350e-21
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
            YGRLGHA  D E+ PR++++  RM+H+ +  +AAG  CS+A+   GHL++WGKLPNAPRGEATM
Sbjct:  354 YGRLGHAGSDNEMTPRVINMFERMSHVTIKTLAAGGACSMALATTGHLYFWGKLPNAPRGEATM 417          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S1GNS8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNS8_CYCTE)

HSP 1 Score: 67.8 bits (164), Expect = 6.370e-12
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
            YG LGH  Q  E RPR+V VL     +++ +  AGA CS+ +TENGH++YWGK  +   GE+ M
Sbjct:  102 YGCLGHGVQADEYRPRVVGVLRSQKGVRLVRATAGASCSMVLTENGHIYYWGK--HRTIGESVM 163          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S3H2I8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2I8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-9
Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMV---------------DVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
            YGRLGH     E  PR V                V+      KV ++  G+  S+A+TE+ HL YWGK+ NAPRGEAT+
Sbjct:  197 YGRLGHNAAQDEFFPREVLAFSHFLPTQGGAKIQVVPVNAQKKVREIVCGSSFSIAVTESRHLAYWGKMSNAPRGEATV 275          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S2MCK2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MCK2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.600e-8
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAG--CSLAITENGHLFYWGKLPNAPRGEATM 192
            YG LGH  Q  E  PR++  L        + V A AG  CS+ +T+NGH++YWGK   A  GEATM
Sbjct:    5 YGCLGHNVQADEYTPRLISALRGPLFASNSPVRAAAGGTCSMILTKNGHVYYWGKHKQA--GEATM 68          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A1E7FDL2_9STRA (RCC1/BLIP-II protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDL2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.590e-8
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
            YG LGH  Q  E  PR V  L R   +  TKVAAG+ CSLA+T  GH++YWG   +    EA M
Sbjct:  218 YGVLGHNRQKDEYYPRHVSSLQR--GMTFTKVAAGSNCSLALTNQGHVYYWGN--HRSNSEAVM 277          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S1Z9F5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9F5_TRICV)

HSP 1 Score: 57.4 bits (137), Expect = 4.270e-8
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAG--CSLAITENGHLFYWGKLPNAPRGEATM 192
            YG LGH  Q  E RPR+V  L            AGAG  CS+ +T NGH++YWG+  +   GEATM
Sbjct:  132 YGCLGHGAQADEYRPRLVGTLRGPLFAANAPRTAGAGAQCSMVLTANGHVYYWGRHRSV--GEATM 195          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S4HXJ2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HXJ2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAG--CSLAITENGHLFYWGKLPNAPRGEATM 192
            YG LGH  Q  +  PR+V  L        + V A AG  CS+A+T NGH++YWGK  +   GEATM
Sbjct:  457 YGCLGHGVQADQYTPRLVATLRGPLFAANSPVRAAAGTQCSMALTANGHVYYWGKHRSV--GEATM 520          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A7S3Q3A3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3A3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-7
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLAR--MTHLKVTKVAAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
            YG LGH  Q  E  PR+++ L           +VAAG  CS+A+TENGH++Y GK  +   GEATM
Sbjct:  334 YGVLGHGVQKDEYTPRLLNPLTGPIFKSNSPVRVAAGTHCSMALTENGHVYYCGKHRSV--GEATM 397          
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Match: A0A6U3T4E5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T4E5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    1 YGRLGHACQDQELRPRMVDVLARMTHLKVTKV--AAGAGCSLAITENGHLFYWGKLPNAPRGEATM 192
            YG LGH  Q  E  PR++  L        T V  AAGA CS+ +T+NGH++YWGK       EATM
Sbjct:  499 YGCLGHNVQADEYTPRLISALRGPLFASNTPVRAAAGAQCSMILTKNGHVYYWGKHRQGT--EATM 562          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71269.18228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LIX9_ECTSI3.040e-37100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDF7_9STRA8.350e-2157.81Regulator of chromosome condensation 1/beta-lactam... [more]
A0A7S1GNS8_CYCTE6.370e-1246.88Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3H2I8_9STRA1.120e-940.51Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2MCK2_9STRA1.600e-845.45Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7FDL2_9STRA3.590e-848.44RCC1/BLIP-II protein (Fragment) n=1 Tax=Fragilario... [more]
A0A7S1Z9F5_TRICV4.270e-845.45Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4HXJ2_9STRA1.290e-745.45Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3Q3A3_9STRA1.760e-745.45Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U3T4E5_9STRA1.770e-745.45Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71269contigEcto-sp13_S_contig71269:340..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score140.2
Seed ortholog evalue3.4e-31
Seed eggNOG ortholog2880.D8LIX9
Model size195
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.chromosome passenger complex localization to kinetochore
EggNOG OGsCOG5184@1,KOG1427@2759
Cds size195
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463978.1001318-CDS-Ecto-sp13_S_contig71269:339..5341681463978.1001318-CDS-Ecto-sp13_S_contig71269:339..534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71269 340..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71269.18228.1prot_Ecto-sp13_S_contig71269.18228.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71269 340..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71269.18228.1

>prot_Ecto-sp13_S_contig71269.18228.1 ID=prot_Ecto-sp13_S_contig71269.18228.1|Name=mRNA_Ecto-sp13_S_contig71269.18228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
YGRLGHACQDQELRPRMVDVLARMTHLKVTKVAAGAGCSLAITENGHLFY
WGKLPNAPRGEATM*
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mRNA from alignment at Ecto-sp13_S_contig71269:340..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71269.18228.1 ID=mRNA_Ecto-sp13_S_contig71269.18228.1|Name=mRNA_Ecto-sp13_S_contig71269.18228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71269:340..534+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGGGAGGCTCGGGCACGCCTGCCAGGACCAAGAGCTGCGGCCCCGCAT GGTGGACGTCCTAGCCCGCATGACCCACCTCAAGGTCACCAAGGTCGCCG CTGGCGCCGGGTGCTCGCTGGCGATCACCGAGAATGGCCACCTGTTCTAC TGGGGGAAGCTGCCCAACGCGCCCCGAGGAGAGGCGACCATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71269:340..534+

>mRNA_Ecto-sp13_S_contig71269.18228.1 ID=mRNA_Ecto-sp13_S_contig71269.18228.1|Name=mRNA_Ecto-sp13_S_contig71269.18228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71269:340..534+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGGGAGGCTCGGGCACGCCTGCCAGGACCAAGAGCTGCGGCCCCGCAT
GGTGGACGTCCTAGCCCGCATGACCCACCTCAAGGTCACCAAGGTCGCCG
CTGGCGCCGGGTGCTCGCTGGCGATCACCGAGAATGGCCACCTGTTCTAC
TGGGGGAAGCTGCCCAACGCGCCCCGAGGAGAGGCGACCATGTGA
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