prot_Ecto-sp13_S_contig7126.18226.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7126.18226.1
Unique Nameprot_Ecto-sp13_S_contig7126.18226.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length196
Homology
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A6H5JQ33_9PHAE (MRP-S28 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ33_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 2.800e-112
Identity = 179/195 (91.79%), Postives = 184/195 (94.36%), Query Frame = 0
Query:    1 MIGAVGTGLARALPAAARRAGTAATAAAASRRCPHPAVFVLRPAAAAEGARGSGLLFSSMSASRAXXXXXXXXXXXXXXAMSGEPLPPRTVPDDILGFSCRTYMAGDADERYPNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEEA 195
            MIGAVG GLARALPAAARRAGTAATAAAASRRCPHPAV+VLRPAAAAEG RGSG+LFSSMSASRA        XXXXX AMSG+PLPPRTVPDDILGFSCRTYMAGD+DERYPNAHG+HPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEEA
Sbjct:    1 MIGAVGMGLARALPAAARRAGTAATAAAASRRCPHPAVYVLRPAAAAEGVRGSGVLFSSMSASRAGGDEDSMEXXXXXGAMSGQPLPPRTVPDDILGFSCRTYMAGDSDERYPNAHGVHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEEA 195          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: D7FTB0_ECTSI (MRP-S28 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB0_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 4.180e-71
Identity = 113/137 (82.48%), Postives = 115/137 (83.94%), Query Frame = 0
Query:   81 MSGEPLPPRTVPDDILGFSCRTYMAGDADERYPNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNK----------------------RYLVHLLENILVEARNVDDEEA 195
            MSGEPLPPRTVPDDILGFSCRTYMAGDADERYPNAHG+HPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNK                      RYLVHLLENILVEARN+DDEEA
Sbjct:    1 MSGEPLPPRTVPDDILGFSCRTYMAGDADERYPNAHGVHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKSAPETRLDMRTKAVVDNYLAFQRYLVHLLENILVEARNIDDEEA 137          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A836CGV1_9STRA (Ribosomal protein S24/S35, mitochondrial, conserved domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGV1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.210e-29
Identity = 54/109 (49.54%), Postives = 77/109 (70.64%), Query Frame = 0
Query:   86 LPPRTVPDDILGFSCRTYMAGDADERYPNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEE 194
            LPPRT+P+++L F  RTY A D    YPN HG+H AEFKV L V +  LGL   ++E+L ++ G R+ +++Q+LRL  + FP+R++NK+YLV+LLE +L EAR  D  E
Sbjct:   13 LPPRTIPEELLTFKARTYFASDTGNPYPNVHGVHLAEFKVVLSVRMEDLGLDRTQQEKLRKLAGLRFNKKEQILRLPCELFPSRVENKKYLVYLLETLLEEARKPDAPE 121          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A6U1LR57_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LR57_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.040e-26
Identity = 56/110 (50.91%), Postives = 78/110 (70.91%), Query Frame = 0
Query:   86 LPPRTVPDDILGFSCRTYMAGDADERYPNA-HGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEE 194
            LPPRTVP++ L F  RTY+ GD   ++P   HGIHP+EFKV ++V +  LGL   +++RL  +VGPRY   +  L LV +RF NRI+NK+Y V LLEN+L+EAR  D+++
Sbjct:   85 LPPRTVPEEKLKFKVRTYIGGDQGIQWPGTPHGIHPSEFKVVMKVQLEDLGLDERQQQRLKFMVGPRYNPDKDELTLVVNRFLNRIENKKYAVFLLENLLIEARKDDNDD 194          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A7S2W1L2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1L2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.810e-25
Identity = 55/104 (52.88%), Postives = 77/104 (74.04%), Query Frame = 0
Query:   86 LPPRTVPDDILGFSCRTYMAGDAD-ERYPNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEAR 188
            LP RTVPD+ L F+ R+YM+   D    P  H I   EF+V L+V +  LGLAP EEERL+ +VGPRY  +++ L+L ++RFPNR++NK+YL++LLEN+L+EAR
Sbjct:   71 LPERTVPDEALLFTGRSYMSAGRDVPSLPEQHRI--GEFRVSLQVKLRDLGLAPEEEERLLIMVGPRYNRKKRELKLTAERFPNRVENKKYLIYLLENLLLEAR 172          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A7S2CHN1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHN1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.130e-22
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 0
Query:   86 LPPRTVPDDILGFSCRTYMAGDADERY-PNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDE 193
            LP RTVPD++L F+  T+M+        P  H +   E+KV L+V +  L L   EE RL+ +VGPRY  +   ++LVSDRFPNR++NKRY+V+LLENIL+EAR  +D+
Sbjct:   73 LPERTVPDELLQFTTCTHMSSIRHSPLIPEQHMV--GEYKVILKVKLADLALTREEERRLLVLVGPRYNWKTGEIKLVSDRFPNRVENKRYIVYLLENILLEARRNEDQ 179          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A7S3H6S6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6S6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.920e-10
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 0
Query:   86 LPPRTVPDDILGFSCRTYMAGDADERYPNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVD 191
            +P RTV DD+L F      +  ++  +P+    +PA+FK  L+V +  L L   E++  +++VG R       ++L  ++FPNR++N++YL+  LE++L EA+N++
Sbjct:   66 IPERTVSDDVLKFEFTARFSSGSEFFHPHLR-TNPADFKTILKVLLEDLPLTKQEKQIFVRMVGKRIRVGNGEVKLTCNKFPNRLENRKYLIFQLESLLREAKNLN 170          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A7R9ZEZ3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZEZ3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-8
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 0
Query:   91 VPDDILGFSCRTYMAGDADERYPNAHGIHPAEFKVELRVPVPLLGL-APAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEEA 195
            +P+D L F  RT   G    RY     I+PAE K+ + V +  + L +  E E   QIVGPR+++++Q L+L S  F +RI+NKR+LV +LE I+   + +  E A
Sbjct:   29 IPEDKLMF--RTVSYG----RYLQEPYINPAEHKITMIVNLRDIPLESDLEHEIFHQIVGPRFMQKRQQLKLTSGVFASRIENKRHLVSMLERIVAHTKRLAKEVA 128          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A8H7BQ76_9FUNG (37S ribosomal protein S24, mitochondrial n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BQ76_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 5.320e-8
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 0
Query:   86 LPPRTVPDDILGFSCRTYMAGDADERYPNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEEA 195
            +PP +  D IL F   TY+ G+           HP E KV L V V  L L   E  +L+ + GPRY      ++L S++FP+R  NK+Y+   L+ ++ EA+N  D  A
Sbjct:   65 VPPNS--DQILKFKTHTYL-GEG----------HPVERKVVLTVKVSDLKLNDTERHKLLLLAGPRYDVNTDEIKLSSEKFPHRKQNKKYVSDTLDKLVAEAKNTTDTFA 161          
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Match: A0A482SE60_9ARCH (MRP-S28 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SE60_9ARCH)

HSP 1 Score: 56.2 bits (134), Expect = 1.900e-7
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 0
Query:  134 LGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNV 190
            L L+P E++ +I +VG R+   ++ ++L +DRFPNRI+NKRYL   LENI+ EA+ +
Sbjct:    6 LELSPEEKKVVIAMVGSRFNPGKKEIKLSADRFPNRIENKRYLTMQLENIVAEAKRL 62          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7126.18226.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JQ33_9PHAE2.800e-11291.79MRP-S28 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTB0_ECTSI4.180e-7182.48MRP-S28 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CGV1_9STRA3.210e-2949.54Ribosomal protein S24/S35, mitochondrial, conserve... [more]
A0A6U1LR57_9STRA2.040e-2650.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2W1L2_9STRA1.810e-2552.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CHN1_9STRA7.130e-2248.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3H6S6_9STRA1.920e-1033.02Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9ZEZ3_9STRA1.080e-838.68Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A8H7BQ76_9FUNG5.320e-835.4537S ribosomal protein S24, mitochondrial n=1 Tax=A... [more]
A0A482SE60_9ARCH1.900e-747.37MRP-S28 domain-containing protein n=1 Tax=archaeon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019349Ribosomal protein S24/S35, mitochondrial, conserved domainPFAMPF10213MRP-S28coord: 94..192
e-value: 3.9E-14
score: 53.2
IPR039848Ribosomal protein S24/S35, mitochondrialPANTHERPTHR13490MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28coord: 119..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..195
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7126contigEcto-sp13_S_contig7126:1772..6514 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7126.18226.1mRNA_Ecto-sp13_S_contig7126.18226.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7126 1697..7588 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7126.18226.1 ID=prot_Ecto-sp13_S_contig7126.18226.1|Name=mRNA_Ecto-sp13_S_contig7126.18226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
MIGAVGTGLARALPAAARRAGTAATAAAASRRCPHPAVFVLRPAAAAEGA
RGSGLLFSSMSASRAGGDEDSIEESGGGGAMSGEPLPPRTVPDDILGFSC
RTYMAGDADERYPNAHGIHPAEFKVELRVPVPLLGLAPAEEERLIQIVGP
RYLERQQVLRLVSDRFPNRIDNKRYLVHLLENILVEARNVDDEEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019349Ribosomal_S24/S35_mit
IPR039848Ribosomal_S24/S35