mRNA_Ecto-sp13_S_contig7124.18225.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7124.18225.1
Unique NamemRNA_Ecto-sp13_S_contig7124.18225.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7124.18225.1 vs. uniprot
Match: D7FTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ1_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 5.420e-95
Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 1 
Query:   43 ARLGAMRLSRCRLLYLCCGIAVTVGLFAALLRPSTVTEYASAAAKLSPSSRVPAGVHVEMDTSEAADPAASAAAVAAIDSAIPKLLQELYRLARDDVLGILGDDDEAKACVNWRKKPNHGCTDPSQCGKGWLFRRKGLLLAVVFTAGGDDSEDPSVATTAVQTSSGTNG 549
            A L AMRLSRCRLLYLCCGIAVTVGLFA LLRPSTVTEYASAAAKLSPSSR+PAG+HVE+D  EAADPAASAAAVAAIDSA PKLLQELYRLARDDVLGILGDDD AKACVNWRKKPN GCTDPSQCGKGWLFRRKGLLLAV+FTAGGDD EDPSVATTAVQTSSGT G
Sbjct:   24 AGLSAMRLSRCRLLYLCCGIAVTVGLFATLLRPSTVTEYASAAAKLSPSSRIPAGMHVELDALEAADPAASAAAVAAIDSASPKLLQELYRLARDDVLGILGDDDGAKACVNWRKKPNQGCTDPSQCGKGWLFRRKGLLLAVMFTAGGDDGEDPSVATTAVQTSSGTAG 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7124.18225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTZ1_ECTSI5.420e-9591.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7124contigEcto-sp13_S_contig7124:265..4109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size556
Hectar predicted targeting categorysignal anchor
Exons4
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463977.9038968-CDS-Ecto-sp13_S_contig7124:264..3891681463977.9038968-CDS-Ecto-sp13_S_contig7124:264..389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7124 265..389 -
1681463977.9227078-CDS-Ecto-sp13_S_contig7124:953..10801681463977.9227078-CDS-Ecto-sp13_S_contig7124:953..1080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7124 954..1080 -
1681463977.935748-CDS-Ecto-sp13_S_contig7124:3668..39281681463977.935748-CDS-Ecto-sp13_S_contig7124:3668..3928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7124 3669..3928 -
1681463977.9466894-CDS-Ecto-sp13_S_contig7124:4066..41091681463977.9466894-CDS-Ecto-sp13_S_contig7124:4066..4109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7124 4067..4109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7124.18225.1prot_Ecto-sp13_S_contig7124.18225.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7124 265..4109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7124.18225.1

>prot_Ecto-sp13_S_contig7124.18225.1 ID=prot_Ecto-sp13_S_contig7124.18225.1|Name=mRNA_Ecto-sp13_S_contig7124.18225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
SRASWLAGGEHWSYARLGAMRLSRCRLLYLCCGIAVTVGLFAALLRPSTV
TEYASAAAKLSPSSRVPAGVHVEMDTSEAADPAASAAAVAAIDSAIPKLL
QELYRLARDDVLGILGDDDEAKACVNWRKKPNHGCTDPSQCGKGWLFRRK
GLLLAVVFTAGGDDSEDPSVATTAVQTSSGTNGI*
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mRNA from alignment at Ecto-sp13_S_contig7124:265..4109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7124.18225.1 ID=mRNA_Ecto-sp13_S_contig7124.18225.1|Name=mRNA_Ecto-sp13_S_contig7124.18225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3845bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7124:265..4109- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGGCGTCTTGGCTTGCTGGTGGTGAGCATTGGAGTTATGGTGAGAT
AGTTGAAGTAGTTTCCATCTCCAGTAGGTACTGCAGAGCATCGCTCGATC
CTTTTCCGATATTCACCTCCATCATCAGCTGGTTTGACGTGTGATGCATC
AGCGACCCCTCTCCTCCGTTCCTGCTGTCAGCACGCTTGGGTGCGATGAG
GTTATCACGATGCCGACTGCTGTACCTGTGCTGCGGGATCGCCGTCACCG
TTGGTCTATTTGCCGCATTGCTACGGCCAAGCACAGTGACAGAATACGCA
TCTGCTGCGGCGAAGCTCTCGCCCTCCTCGCGAGTCCCCGCCGGCGTGCA
TGTTGAAATGGACACCTCTGAGGCCGCTGACCCTGCCGCTTCTGCTGCCG
CCGTGGCAGCCATCGATTCAGCCATCCCGAAACTGTTGCAGGTGTGAATG
CTGTGGGGTTGGGGTCTCTTCCCGCGCCTATCCACCTGTCGTAGGCTTGT
TTGCATTTGAGCGAGGAGGGATGCGGTATGTATAGGTATAACATGCACAA
AAGATCCTGACTCGGTTTGTGCAGAGAGGGCACCAACGGCGCAACGGCGG
CGGCATTCTGCGGGATTGAAATTGCAGGGTGCACATGTGTGCCGCAGTAA
GTACGCTTCCGCTCTCTCGGCTGCCCTCGCCGAGGGTGGGCCGAGGCCCG
CCAGTGGGTTTAGACCACGCATAGACCACGCAGACACGAGCTCAAGCCTC
GGAGGGAAGGTAGTCCCGAGTTTGGTGGATAGGAGTTACCGATGTCGGGA
GATCGAGGTATCTCCCGTTGGACCAAATCGGGCAGCAGCATCGCGTTGAC
CCCTGTTGTCCCGGTTTGGACCATGTAGTTTGGACACCGGGGTTGGGCAG
CACCGTAGAACGCAGGGGGGGTGGCCCGGATAGGAATAGAGGGGCTGCAC
ACTGCGCGGGCATGCATGGGAGAAACGAGCATGGAGTGGAGTCGGGCAGA
GCAGGAAGGTTGCACCTGCCTACGAAGAACGACACGAACGGGGCCAACAG
CAGACATCTAGTCAGCAAATCCAAACGGCGACTGGCGAAGGCAAAAATTC
CCTTTTTACCGGGGTCGATCGTATCCCGGTTAGTTTTCTCTTCGTTTGGG
TAAAAAGTCGCGTCTTTGAGTACTTTTCTGGGGGTCCATTTTTTTTCCTT
TCTAGAAAGGTGTGCTCCCTTTTTGGGTTGTTTGGTTGTGACAACGGAAG
CGTCCACGTCAGTTGGACCAGTACTGACATTAGGAGGCATTGAGCGGAGA
CCGGGACGGTTTTTGATACGAAGACCAACAACAACAACAACAATGGAGGG
ATAAGATCGGCCGTTGCTGTACACATCACCTCGACGGTATATCGATTGAA
TTTGAGCGTAAGCCAAAAGACCAGTTAAAAAGAAACGGCGCGTCTCGAAA
CGAAGTAAGTTGTTACGCCGTAGGTTGCACGTGGGCACAAACGGCTACCA
AGAGTATTCTGACGCTGCCGACCATGGGATAAGTGTTGTGTGACGGAGCA
AACTGCCACTGCTGTACATATAGCCAGCGGTTCTCGACCATATTAGGGCA
GGGCCCCAAGCGACCGAAGTATTTCCGGCACAAACTTGCGAGGGAGCGGC
CGACAAAGTGATTGTTGTTGTTGTCTCAAGTTCAAACCCGTTCTGGTCTT
CTCGAGTACCTGCTCCTTCGTACCTCGTACCATATAAATGTTGAATTTCA
ACAGTGGCAGTCGCAAGGCTGACCCAGAACAAAGCCACAGCAGTAGCGGC
CACGGTCTAAGAGAGGGTCGTGACAAGCTTCAAAAACATCCCTTGTGGTA
TTTTTGGACTCCTTCTCTACGGATAAGAGAGGATTGCTCTGATGTTTAGT
GTGTCGCTGGATAAAAGAGAGAAAAACATAGTCCGGTTCTGCCTGCACTG
GCGGTGGACGCTCTCGCCTAGCATCTTGAACTGTACTACATATGCAATAC
AGAACGTGCGAGTTTCGTGGCCGTGACAAGCCACTTTTATTCTCTTGAAT
TGGTACCAGCTGCATGTTCTGTCTTTCTCCGTAGTCGATACTCTGAACGA
ATACAGTGAGCATACTCAGAGAGGGGCCCACCACTCGCGGAAACATGGAT
CCAGCAGGTGGTCCTCAATCTTCACCGTCAATGAAGACGTCGTAACATCA
ACTCGAAGATTTTCTAGGGGTAGCTTCTCTGTGTTGCCGTATGCGTTTGT
GGTACTAATATGAGTTCATGAAAAAAAGAGTGTGGCTGAGGTTCAACTGT
CGCGGAGGCGTTTCCTTCCGTTTACATGAGGGTTGCGGTATTTGCGATCC
TTAACGTTGCCTGAACTAGGTCCTCGTTGCCAACCCATGCACTCTCTCCG
GTGGTCGGCGTTCGCGTTCCACGTTCATGGGTGCGTGTGTGTACTCATAG
TCGCGTGTGCCGTAGTCGTTAGACCACTGACCTCACATCCCTACGAAGCC
CGGACGGAGCACGCCGGGTGCCCACCGGACCAGGCTCTCACATTACCAAG
CGCGAAGCACTATGAATTATTCGGCGAGTCGTATGGAGGGTGTGCTGCAT
GCTGCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTGCATACGGACAA
CAGCTGCTTATTACTTATCTTATTTTCTGGTGCTTTCACTTTGAGAGACA
GTCATGAGCACTGTGTAACTGCCTCGAGGGTGCTTGACCAATTTAATACA
ACGAGGTGCAACCATCCCCTTTGCGTGGAGTGAGGGTTCTAGACCCCGCA
CAACATAATCTACTCGACCACCGTTTATGATTTCCGCATAAAAAACAAAG
GCAAAAAAAGAAAGTGGTGTAACGTGACTGTCGAGCTCACGAAGTGATCG
GCTTGTTTAATAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGATGGC
GACGGGGGGATTGGGGGTGTTTTGTGGCACGTGTGTTTCCTTTTTGATAC
CCCCTTCGCCGCCTTCTTCTTCTTTCCAGGAGCTGTATCGCCTGGCGCGA
GATGATGTGTTGGGGATACTTGGCGATGATGATGAGGCAAAGGCGTGCGT
CAACTGGAGAAAAAAGCCCAACCACGGGTGCACCGACCCCAGCCAGTGCG
GAAAAGGTGGCCCTCTTTCCCCCCTGCCCAGTGCACTCGTGTATGTAGCT
TTTACTTCTGGAGTTTCCTGTGCACCATGAAAGAGAGTGTGAGCGCCAGA
CAAGCGTGAGCATTCGTCGGCGTGAATCGTGGGTTGCGGCTGATGTGTGG
TGTGGCACAGCAGCAAGAATGCGCGTGACGCATCCTGGGCGTTCGTCAGA
GCTTCGCCACAACGCAGAAACAGTGTTACTGTTACAGCGATAAACATCAC
TCACCGCTGTCGACTACTCGGTGCTTCTGCTGTTCGTCCTTCTCGTACCG
CTATGCCTTGGATGTTTGTCGTAGTCTTCGCGTGACTAGACCTGTCCTAA
ACCTCAACAGTAGTACCTACCAGCCATCGAAGAGAAACGGAAACGAAGGG
GTTGCACCCCAGCACACGGCAAAAGCCCTTAGCACGACAAACGTGGGCTC
TGTTCACGAAGTAGATGAACCGTTATTCAGAAGTCCTGAGGACGTACAGC
GATTGCAGTGGTGTTGGTGTTGGCGATGGTGATTGGTGATGGAAACACCT
GTGGCGATGAACCGGTGCAGGGTGGCTGTTTCGGCGAAAGGGCTTGCTAC
TGGCCGTGGTGTTCACCGCAGGGGGCGACGACAGCGAAGACCCTTCAGTT
GCAACAACCGCCGTCCAAACAAGCAGCGGGACCAATGGTATATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7124:265..4109-

>mRNA_Ecto-sp13_S_contig7124.18225.1 ID=mRNA_Ecto-sp13_S_contig7124.18225.1|Name=mRNA_Ecto-sp13_S_contig7124.18225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7124:265..4109- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGGCGTCTTGGCTTGCTGGTGGTGAGCATTGGAGTTATGCACGCTT
GGGTGCGATGAGGTTATCACGATGCCGACTGCTGTACCTGTGCTGCGGGA
TCGCCGTCACCGTTGGTCTATTTGCCGCATTGCTACGGCCAAGCACAGTG
ACAGAATACGCATCTGCTGCGGCGAAGCTCTCGCCCTCCTCGCGAGTCCC
CGCCGGCGTGCATGTTGAAATGGACACCTCTGAGGCCGCTGACCCTGCCG
CTTCTGCTGCCGCCGTGGCAGCCATCGATTCAGCCATCCCGAAACTGTTG
CAGGAGCTGTATCGCCTGGCGCGAGATGATGTGTTGGGGATACTTGGCGA
TGATGATGAGGCAAAGGCGTGCGTCAACTGGAGAAAAAAGCCCAACCACG
GGTGCACCGACCCCAGCCAGTGCGGAAAAGGGTGGCTGTTTCGGCGAAAG
GGCTTGCTACTGGCCGTGGTGTTCACCGCAGGGGGCGACGACAGCGAAGA
CCCTTCAGTTGCAACAACCGCCGTCCAAACAAGCAGCGGGACCAATGGTA
TATGA
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