mRNA_Ecto-sp13_S_contig7122.18222.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7122.18222.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 1.300e-163 Identity = 249/263 (94.68%), Postives = 253/263 (96.20%), Query Frame = 1
Query: 1 ETAKMFDHLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEHGDRELEKAARDMANETVSASDAVEGGVGGELAKLEPLVHLGNIFYRGEKFFWRTKDLIEVVIQLNEAKGFLAIPASAAAEAEILNDLKAKRLAAKTEHAMGGSGSGSGSRGGEIDANKEQAGDQQQEDQALSEKAHMAYIADYIVHRITMPDGDGNLLQPDVTRPEEEVNPGLPAGGEGSSTGSGAKKTKRGSAAARPGLMRTTFDEWDTLL 789
ETAKMFD LDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGE GDRELEKAARDMANETVSA+DA EGG+GGELAKLEPLVHLG IFYRGEKFFWRTKDLIEVV+QLNEAKGFLAIPASAAAEAEILNDLKAKRLAAKTEHAMGGSGS RGGE DANKEQAGDQQQEDQALSEKAHMAYIADYIVHRITMPDG+GNLLQPDVTRPEEEVNPGLPAGGEGSSTGSGA KTKRGSAAARPGLMRTTFDEWDTLL
Sbjct: 317 ETAKMFDQLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEDGDRELEKAARDMANETVSANDAAEGGLGGELAKLEPLVHLGKIFYRGEKFFWRTKDLIEVVVQLNEAKGFLAIPASAAAEAEILNDLKAKRLAAKTEHAMGGSGS----RGGESDANKEQAGDQQQEDQALSEKAHMAYIADYIVHRITMPDGNGNLLQPDVTRPEEEVNPGLPAGGEGSSTGSGATKTKRGSAAARPGLMRTTFDEWDTLL 575
BLAST of mRNA_Ecto-sp13_S_contig7122.18222.1 vs. uniprot
Match: D8LCP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP2_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 3.860e-16 Identity = 78/267 (29.21%), Postives = 116/267 (43.45%), Query Frame = 1
Query: 4 TAKMF----DHLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEHGDRE-----LEKAARDMANETVSASDAVEGGVGGELAKLEPLVHLGNIFYRGEKFFWRTKDLIEVVIQLNEAKGFLAIPASAAAEAEILNDLKA--------------KRLAAKTEHAMGGSGSGSGSRGGEIDANKEQAGDQQQEDQALSEKAHMAYIADYIVHRITMPDG---DGNLLQPDVTRPEEEVNPGLPAGGEGSSTGSGAKKTKR 726
T+++F + D +G G+I+L+EF R+CL+I +M WKAER RR G +G HG R +++AA MA E A +L +P LG + Y G K FWRT + + + + N+ K +AI E+E LK +R+A TE G EI E A + L +KA + ++DY++ R+ + DG DGN + L GG G T + T R
Sbjct: 126 TSQLFGVFLETFDTDGSGTIELSEFIRWCLDIDTMAWKAERVRRTTGGQTSGGHGKRGDGEIGIDEAAARMAGEVAQA----------QLPPEQPRFPLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKG-----------EIQRLPEDARAK------LFDKARASVLSDYLLARLKLIDGRDADGNATDTQASAAAISAAARLGLGGVGPGTAPESASTAR 365
BLAST of mRNA_Ecto-sp13_S_contig7122.18222.1 vs. uniprot
Match: D8LSJ9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ9_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.060e-10 Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1
Query: 28 DANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEHGDRELEKAARDMANETVSASDAVEGGVGGELAKLEPLVHLGNIFYRGEKFFWRTKDLIEVVIQLNEAKGFLAI 372
D +G+G+++L EF FCL IPS+ W+AE+ARR L N + EL AAR +A S V +G + ++G +FFWR+K+ I+V + LN +G + I
Sbjct: 175 DTDGNGTVELDEFMTFCLSIPSLPWRAEKARR--LNNAESKD---ELNVAARKIARRRSSLR----------------AVPIGELVHQGSRFFWRSKETIDVALHLNADEGLMTI 268
BLAST of mRNA_Ecto-sp13_S_contig7122.18222.1 vs. uniprot
Match: A0A835YNE5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE5_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 3.810e-8 Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 1
Query: 1 ETAKMFDHLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEHGDRELEKAARDMANETVSASDAVEGGVGGELAKLEPLVHLGNIFYRGEKFFWRTKDLIEVVIQLNEAKGFLAI 372
E ++ H DAN +G I+L+EF FC+ IPS+ WKAERARR + G L +AAR+ S AV+ LG + + FFWR++ ++VV+ N +G + I
Sbjct: 86 ELDELMAHFDANRNGRIELSEFMEFCMAIPSLAWKAERARR-----MSAVDGPEALTEAARNSERRR-STCKAVD---------------LGEKIHDRKMFFWRSQQNLDVVLHENIGEGVVII 188
BLAST of mRNA_Ecto-sp13_S_contig7122.18222.1 vs. uniprot
Match: A0A7S2BJX7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJX7_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.100e-5 Identity = 36/124 (29.03%), Postives = 55/124 (44.35%), Query Frame = 1
Query: 1 ETAKMFDHLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEHGDRELEKAARDMANETVSASDAVEGGVGGELAKLEPLVHLGN-----------IFYRGEKFFWRTKDLIEVVI 339
E +++F LD +G G+ID+ EF C IP + WKAE+ R + +E AA+ E + G G + LE H + + Y G K FWRT + I++V+
Sbjct: 78 ELSEIFQDLDDDGGGTIDVDEFKAHCYNIPRLAWKAEKIR-------FEREKTKSIEDAAKMAEREATNLPLTPSGSTGAIMHALEDHRHQKDSAAAANMQSKEVIYEGTKLFWRTHEKIDIVM 194 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7122.18222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7122.18222.1 >prot_Ecto-sp13_S_contig7122.18222.1 ID=prot_Ecto-sp13_S_contig7122.18222.1|Name=mRNA_Ecto-sp13_S_contig7122.18222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp MFDHLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEHGDRback to top mRNA from alignment at Ecto-sp13_S_contig7122:600..4293- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7122.18222.1 ID=mRNA_Ecto-sp13_S_contig7122.18222.1|Name=mRNA_Ecto-sp13_S_contig7122.18222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3694bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7122:600..4293- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7122:600..4293- >mRNA_Ecto-sp13_S_contig7122.18222.1 ID=mRNA_Ecto-sp13_S_contig7122.18222.1|Name=mRNA_Ecto-sp13_S_contig7122.18222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7122:600..4293- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |