prot_Ecto-sp13_S_contig7121.18221.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7121.18221.1
Unique Nameprot_Ecto-sp13_S_contig7121.18221.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length699
Homology
BLAST of mRNA_Ecto-sp13_S_contig7121.18221.1 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE)

HSP 1 Score: 986 bits (2548), Expect = 0.000e+0
Identity = 579/703 (82.36%), Postives = 595/703 (84.64%), Query Frame = 0
Query:    1 RCFRSFVDRFAPNIFSTAQEEAGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMDTCVVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAEDQEGDGGGSCEGRGAPAGGGQPSGPPAGGPAAEPRVTLLQGLRAEGVLSVDADQVAEILLAGPSSTAAPGTXXXXXXAPTSPATGDEGWRSGSGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGEAAGDGRVIWRRIHPAEIFGREAEAVAEVLREVGAGGDALHAERSGAPCHKEAVEGAAPVHDVVGVSVVYGSSSFVAAPYRSVSGGAAGNGLVHPTRVGGHSVSGGGIEIGKVKHPVGTSTTHVCFIGCGGRXXXXXXXXXXXXXXX-AAAEAAAPEFRLAREASRSCLTARVCVLLGGFPALDEALLSRGRSSENERDIPEVGAAKRSVAVEECPSFGAAAPDAVGASADGSGEEGGTGAGEPSVAGGGRGGGTPAEVDPETSVSTTQAEEGGPPPSXXXXXXXXXXXXXTPPP----QISPFSQGLERKASRLAENSKISEPFRVYAARSADEMGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTKLELLNARMDGTAGGFAKSFGAGWHRADGGGT 698
            RCFRSFVDRFAPNIFSTAQEE GGGTTLVVLEAHLVLLEQLLRFHDPALAAHMD C VSPAAYATPW  FVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAED+EGDGGGSCEG GAPAGG Q SGPPAGGPAAEPRV+LLQGLRAE VLSVDADQVAEILLAGPSSTA P        APTSPATGD+GWRSGS + GG FVLVDCRPPAP  EGPAGGGMRAGGE AGDGRVIWRR+HPAE FGREA AVAEVLREV AG DALH ERSGAPCHKEAVEGAAP HD+VG+SVV GSSS VAAPY +V GGAAGNGLVHPTR+ GH+VSGGGI IG+VKHPVGTSTTHVCFIGCGGRXXXXXXXXX       AAAEAAAPEFRLAREASRSCLT RVCVL GGF ALD A+LSRGRSSEN R +PEVGAAK SVA EECP F AAAPDAVGASA+GS E                            +              XXXXXXXXXXXXX        QI PFSQGLERKASRLAENSKISEPFRVYAARSADEMGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVT+LELLNARMDGTA GFAKSFGAG HRA GGGT
Sbjct:  169 RCFRSFVDRFAPNIFSTAQEETGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPW--FVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAEDREGDGGGSCEGPGAPAGGRQQSGPPAGGPAAEPRVSLLQGLRAEEVLSVDADQVAEILLAGPSSTAVPAAA-----APTSPATGDDGWRSGSRKFGGTFVLVDCRPPAPESEGPAGGGMRAGGEPAGDGRVIWRRVHPAESFGREAVAVAEVLREVEAGEDALHGERSGAPCHKEAVEGAAPAHDIVGMSVVSGSSSVVAAPYGNVGGGAAGNGLVHPTRICGHAVSGGGIRIGEVKHPVGTSTTHVCFIGCGGRXXXXXXXXXRFTSFATAAAEAAAPEFRLAREASRSCLTPRVCVLQGGFAALDGAMLSRGRSSENGRGVPEVGAAKCSVAAEECPPFRAAAPDAVGASANGSSEXXXXXXXXXXXXXXXXXXXXXXXXXXGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPPFSQGLERKASRLAENSKISEPFRVYAARSADEMGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGLHRAKGGGT 864          
BLAST of mRNA_Ecto-sp13_S_contig7121.18221.1 vs. uniprot
Match: D7FJC0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC0_ECTSI)

HSP 1 Score: 595 bits (1533), Expect = 2.100e-205
Identity = 318/333 (95.50%), Postives = 321/333 (96.40%), Query Frame = 0
Query:    1 RCFRSFVDRFAPNIFSTAQEEAGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMDTCVVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAEDQEGDGGGSCEGRGAPAGGGQPSGPPAGGPAAEPRVTLLQGLRAEGVLSVDADQVAEILLAGPSSTAAPGTXXXXXXA-PTSPATGDEGWRSGSGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGEAAGDGRVIWRRIHPAEIFGREAEAVAEVLREVGAGGDALHA 332
            RCFRSFVDRFAPNIFSTAQEEAGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMD C VSPAAYATPW  FVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAEDQEGDGGGSCEGRGAPAGG Q SGPPAGGPAAEPRV+LLQGLRAEGVLSVDADQVAEILLAGPSSTAAPG XXXXXX  PTSPATGD+GWRSGSGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGEAAGDGRV+WRRI PAE FGREA AVAEVLREVGAGGDALHA
Sbjct:  116 RCFRSFVDRFAPNIFSTAQEEAGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPW--FVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAEDQEGDGGGSCEGRGAPAGGEQQSGPPAGGPAAEPRVSLLQGLRAEGVLSVDADQVAEILLAGPSSTAAPGXXXXXXXXXPTSPATGDDGWRSGSGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGEAAGDGRVMWRRIRPAESFGREAAAVAEVLREVGAGGDALHA 446          
BLAST of mRNA_Ecto-sp13_S_contig7121.18221.1 vs. uniprot
Match: D7FHU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU7_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.760e-37
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 0
Query:  621 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTKLELLNARMDGTAGGFAKSFGAGWHRADGGGT 698
            MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVT+LELLNARMDGTA GFAKSFGAGWHR +GGGT
Sbjct:    1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 78          
BLAST of mRNA_Ecto-sp13_S_contig7121.18221.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.850e-15
Identity = 54/166 (32.53%), Postives = 85/166 (51.20%), Query Frame = 0
Query:    2 CFRSFVDRFAPNIFSTAQEEAGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMDTCVVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLR--LRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFA 165
            C+ +F+ RF P  F+  +E        + L+    L   LL +H P L   +D   + P  YATPW  F+TLF++    P L  +W   L +GDP LH F+ LA+++ N   +++    ++P T+  L   +RS   V  + R A  L  +TP+ F  +LR A +A
Sbjct:  125 CYSAFLRRFLPYAFNQDEE-------FLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPW--FMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEAILKAEEANLPETMCRLTDGMRSVEEVRALMRTAKDLMLNTPKSFRKILRSALYA 281          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7121.18221.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JR72_9PHAE0.000e+082.36Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7FJC0_ECTSI2.100e-20595.50Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7FHU7_ECTSI2.760e-3794.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKI7_ECTSI2.850e-1532.53Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.80coord: 30..153
e-value: 1.2E-13
score: 53.0
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 31..112
e-value: 7.1E-7
score: 29.1
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 1..94
score: 11.986
IPR039755TBC1 domain family member 23PANTHERPTHR13297UNCHARACTERIZEDcoord: 2..167
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 31..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7121contigEcto-sp13_S_contig7121:4682..7641 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7121.18221.1mRNA_Ecto-sp13_S_contig7121.18221.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7121 4682..7641 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7121.18221.1 ID=prot_Ecto-sp13_S_contig7121.18221.1|Name=mRNA_Ecto-sp13_S_contig7121.18221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=699bp
RCFRSFVDRFAPNIFSTAQEEAGGGTTLVVLEAHLVLLEQLLRFHDPALA
AHMDTCVVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEYGDPVLHQ
FLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRES
TPRLFCDVLRRACFAEDQEGDGGGSCEGRGAPAGGGQPSGPPAGGPAAEP
RVTLLQGLRAEGVLSVDADQVAEILLAGPSSTAAPGTTTTTAAAPTSPAT
GDEGWRSGSGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGEAAGDGRVIW
RRIHPAEIFGREAEAVAEVLREVGAGGDALHAERSGAPCHKEAVEGAAPV
HDVVGVSVVYGSSSFVAAPYRSVSGGAAGNGLVHPTRVGGHSVSGGGIEI
GKVKHPVGTSTTHVCFIGCGGRGGSGGGGGCSASFATAAAEAAAPEFRLA
REASRSCLTARVCVLLGGFPALDEALLSRGRSSENERDIPEVGAAKRSVA
VEECPSFGAAAPDAVGASADGSGEEGGTGAGEPSVAGGGRGGGTPAEVDP
ETSVSTTQAEEGGPPPSPASPQGGTGGGTPTPPPQISPFSQGLERKASRL
AENSKISEPFRVYAARSADEMGRALRSLPLTASKPLEDAARVCNSLLRTN
ARALGDSRLSLSRSVTKLELLNARMDGTAGGFAKSFGAGWHRADGGGT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR039755TBC1D23
IPR035969Rab-GTPase_TBC_sf