mRNA_Ecto-sp13_S_contig12158.1822.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: D7FZL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI) HSP 1 Score: 214 bits (546), Expect = 6.980e-63 Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 515
RQDVREGLVEPQRLV MTSTELMAKDKREAMDKAVSERTEARMLDWYDKN+DKINKQCGIKET+GMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC
Sbjct: 265 RQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 371
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: A0A836CH25_9STRA (Transcription factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.100e-31 Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 515
R DV G V L+ M+ TE+++ KR+AM+ + +AR +DW +KNQD+INKQCGI EGMFECGRCKS KT Y QKQTRSADEPMTTFVTC +C +W+FC
Sbjct: 251 RSDVVHGAVPCGALIAMSPTEMLSAAKRQAMEAQAQDLVDARRMDWAEKNQDEINKQCGITNMEGMFECGRCKSKKTHYYQKQTRSADEPMTTFVTCLHCGKKWRFC 357
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: A0A8K1CMA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMA4_PYTOL) HSP 1 Score: 121 bits (303), Expect = 6.060e-28 Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 509
R+D+ + +V ++L+ MT EL ++KR + K + + LDW D N+DKINKQCGI+ ++G+F CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct: 206 REDLLQDMVSAEQLIAMTPEELATEEKRNEIMKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 310
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: A0A5D6XF33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF33_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.450e-27 Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 509
R+D+ + V ++L+ M++ EL ++KR + K + + LDW D N+DKINKQCGI+ +G+F CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct: 218 REDLLQDAVSAEQLIAMSADELATEEKRLEVQKLRDDAFQKARLDWADANEDKINKQCGIENAKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 322
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: K3WZ99_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ99_GLOUD) HSP 1 Score: 119 bits (297), Expect = 5.660e-27 Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 509
R+D+ + V ++L+ M++ EL ++KR + K + + LDW D N+DKINKQCGI+ +G+F CGRCKSTKT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct: 220 REDLLQDAVSAEQLINMSADELATEEKRNEILKLRDDAFQRARLDWADANEDKINKQCGIENAKGLFTCGRCKSTKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 324
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: A0A7R9WI09_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WI09_9STRA) HSP 1 Score: 115 bits (289), Expect = 4.370e-26 Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKET---EGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKF 512
R V G + P+ LV M S EL +K A K VS+ ++R LDW N+DKINKQCGIK +F CGRCKS KTT TQKQTRSADEPMT FV C NC NRWKF
Sbjct: 187 RDQVLLGRIGPEDLVKMRSEELATSEKAAARAKLVSDLQDSRRLDWETANEDKINKQCGIKGELLKASLFTCGRCKSIKTTSTQKQTRSADEPMTVFVLCLNCGNRWKF 295
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: F0W9A3_9STRA (Transcription elongation factor putative n=2 Tax=Albugo TaxID=65356 RepID=F0W9A3_9STRA) HSP 1 Score: 114 bits (285), Expect = 2.080e-25 Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGI-KETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 509
R+D+ +V ++L+ M+ EL +KR ++K + + LDW D N+DKINKQCGI K ++G+F CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct: 203 REDLLLDVVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIEKNSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 308
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: A0A7S2XYD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD9_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.250e-25 Identity = 58/107 (54.21%), Postives = 68/107 (63.55%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 515
R DV G + P LV ++S EL D R + + A DW N K+N CGIK+ EG+F+C RCKS KTT+TQKQTRSADEPMT FVTC NC NRWKFC
Sbjct: 225 RADVVNGSLAPDLLVQLSSDELATDDLRNERARIREDAINASRSDWDAANDQKLNAMCGIKQMEGLFQCFRCKSKKTTHTQKQTRSADEPMTVFVTCLNCGNRWKFC 331
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: B8C9G9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9G9_THAPS) HSP 1 Score: 115 bits (288), Expect = 3.190e-25 Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIK---ETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 509
R V G V P+RLV MTS EL +K +A++ V E+R LDW N+DKIN CGIK + +F CGRCKSTKTT TQKQTRSADEPMT FV C NC RWK
Sbjct: 286 RDRVILGQVTPERLVKMTSEELQTDEKAKAIEDTVKSLQESRRLDWDQANEDKINDMCGIKGDLKNASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVLCLNCGKRWK 393
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Match: A0A662Y1Z7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1Z7_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.590e-25 Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 3
Query: 195 RQDVREGLVEPQRLVVMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 509
RQ + + +V +L+ MT+ EL ++KR + K + + LDW + N DKI KQCG + T+G+F CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct: 249 RQSLLDDMVSGDQLIAMTAEELATEEKRSEIKKLRDDAFQEARLDWAEANHDKIQKQCGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVHCHNCGNRWK 353 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12158.1822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12158.1822.1 >prot_Ecto-sp13_S_contig12158.1822.1 ID=prot_Ecto-sp13_S_contig12158.1822.1|Name=mRNA_Ecto-sp13_S_contig12158.1822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp MTSTELMAKDKREAMDKAVSERTEARMLDWYDKNQDKINKQCGIKETEGMback to top mRNA from alignment at Ecto-sp13_S_contig12158:2170..4549- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12158.1822.1 ID=mRNA_Ecto-sp13_S_contig12158.1822.1|Name=mRNA_Ecto-sp13_S_contig12158.1822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12158:2170..4549- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12158:2170..4549- >mRNA_Ecto-sp13_S_contig12158.1822.1 ID=mRNA_Ecto-sp13_S_contig12158.1822.1|Name=mRNA_Ecto-sp13_S_contig12158.1822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12158:2170..4549- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |