mRNA_Ecto-sp13_S_contig712.18219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig712.18219.1
Unique NamemRNA_Ecto-sp13_S_contig712.18219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig712.18219.1 vs. uniprot
Match: A0A6H5JK59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.370e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:  462 WYLMAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDENLVPIPGKVAGKHYR 632
            WYLMAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDENLVPIPG VAGKHYR
Sbjct: 1176 WYLMAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDENLVPIPGMVAGKHYR 1232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig712.18219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK59_9PHAE3.370e-2598.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig712contigEcto-sp13_S_contig712:8311..11811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start1
Seed ortholog score66.6
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog78898.MVEG_07382T0
Model size2986
KEGG koko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs39KJR@33154,3PABM@4751,COG5560@1,KOG1870@2759
EC3.4.19.12
Cds size549
COG Functional cat.O
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463977.1562767-UTR-Ecto-sp13_S_contig712:8310..105291681463977.1562767-UTR-Ecto-sp13_S_contig712:8310..10529Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig712 8311..10529 -
1681463977.2198005-UTR-Ecto-sp13_S_contig712:11593..118111681463977.2198005-UTR-Ecto-sp13_S_contig712:11593..11811Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig712 11594..11811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463977.1776853-CDS-Ecto-sp13_S_contig712:10529..106651681463977.1776853-CDS-Ecto-sp13_S_contig712:10529..10665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig712 10530..10665 -
1681463977.1915548-CDS-Ecto-sp13_S_contig712:11157..113601681463977.1915548-CDS-Ecto-sp13_S_contig712:11157..11360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig712 11158..11360 -
1681463977.2081633-CDS-Ecto-sp13_S_contig712:11383..115931681463977.2081633-CDS-Ecto-sp13_S_contig712:11383..11593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig712 11384..11593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig712.18219.1prot_Ecto-sp13_S_contig712.18219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig712 10530..11593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig712.18219.1

>prot_Ecto-sp13_S_contig712.18219.1 ID=prot_Ecto-sp13_S_contig712.18219.1|Name=mRNA_Ecto-sp13_S_contig712.18219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MLRPRPPPLPPMAAAEVKTGREGLVQGAPAFPVREMGTAEAAHWTISNSS
SSRPNKGRRTRKRTTRPTKREEEEEEEEEEIWYLMAGTWLSRWHAYVLSG
TGEDLDFPTPSPGPITNGDIVDENLVPIPGKVAGKHYRGAMIEVWRYLHD
RYGGGPVICRSDPDGLYETKTSKHGDSSPPLP*
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mRNA from alignment at Ecto-sp13_S_contig712:8311..11811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig712.18219.1 ID=mRNA_Ecto-sp13_S_contig712.18219.1|Name=mRNA_Ecto-sp13_S_contig712.18219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig712:8311..11811- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAAGCGGAGAAAGGCCGCCCGACAAGCCCGGCAACGGAGGCGCAACG
CCGGCTCCACGCCGCAGAGCAACGACCCCCGCCACCCCGGCGGCGGCGGC
GGCGGCGGCGGCGGCATCGTTGTGGATGCGGCAATCGCGACCGAGAGCAC
TCATGCCGGCAACGGGGAGGCGGAGGGGGAGGGAGAGGTGCTCGAGCTAG
GTAGCTCTGCGACTGGTGATGCTGCGGCCGCGGCCGCCGCCACTGCCGCC
GATGGCAGCGGCGGAGGTGAAGACAGGGAGGGAGGGGCTGGTGCAGGGGG
CGCCAGCGTTTCCAGTGCGGGAGATGGGGACGGCGGAAGCGGCACATTGG
ACGATCAGCAACAGCAGCAGCAGCAGGCCCAACAAGGGCCGGAGGACGAG
GAAGCGTACTACGAGGCCGACGAAGAGGGCGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGATATGGTACCTCATGGCAG
GGACGTGGCTGAGCAGATGGCACGCGTACGTCCTCTCCGGGACGGGCGAG
GATCTGGACTTCCCCACGCCGTCGCCGGGCCCGATAACAAACGGGGACAT
CGTTGACGAGAACCTTGTCCCGATACCCGGGAAGGTGGCGGGGAAACACT
ATCGGTGAGGGAGGAAACGGGGGGGGGGGTGTAATGTTTTCACAGCCGTG
CATGCTGGAGTCGTTAGACCATGACCTCACATCCCTACAAAGCCGGGACG
GAGCACGCCCTTGGGGGGGGAGTAGGAGGGTCAGAGGATGGGCGAGGTTT
TGTATGCACTTACTTTTTTTTGGTGCTCAATCTTAACTCCTATCGCTTTT
TTTAGCAGAAAATAGCTTACTTTCTTAGGGTTTAGGGTGGCTCCCTGGGT
AGCGTTTGCATGAACAGGGCTAAAGCCGGTGCGGGGTTGAAGGTCGATGA
GGTAGGAGACCATGTAGCTGTTGCCGCGAGAGTGTACAACGTGGGGGAGA
AGACTGGTACCGAGGATGGGCCATAACACTCGTGTACGGCGCTTTTGTTC
GGAGAGCACCGGCCGCGCGCTCTGGGCTTGTAACCTGTCGGCGCCTCCTC
ACCTTACTTCTCTGCCTTTTTTTGTTTCGTTATTTGCATCCTTCAGAGGC
GCCATGATCGAAGTGTGGAGGTACCTTCACGACCGTTATGGAGGCGGGCC
CGTGATATGCCGGAGCGACCCCGACGGCCTGTACGAGACCAAGACATCGA
AGCACGGCGATTCTTCGCCGCCATTGCCGTAGCCTTTCAGAGCGATGAAT
TCAGAGTTGCTTCTTACGCCCCCGCGCCCCCGAAAGCACCGGCACTTGGT
TTGATATGGACACCGCTTCTGGAGGAAGGGAGACGTCATTGCAGCCTCAC
CATGTGGAAAAGCTTGAGCTGTGTGGAGGTAGGAAATTTCGAGGCTTCTT
GCAACGGTTGGGAGGAAGCGTGTGTCCGTTCAGACCCAGATCTTCATGTA
TCTACCACACGCGCGCGCCAATGAAACGTGCGGGGGCCCCGTCTGGTACT
CGTCCCGGGGGTGGCGTAGTTTGGTGCGACGTTATTGAAGGGGGGAAGGG
GGGGGGGATTTGATCGTGTCATGTGTTGATGGGCCAGCAGACACACCGTG
TTTTTCTCTCCTTTTTCTCGTTGGCGCGTGGGTGGGGTTCTTTCAGACCC
GCGCCGCGTGTAGGAAACCTCAACGCTTAATCGGGCTGCCACAGTGCGTG
CGTTTGATTTCGGCAATAGTTGGGACAGTGCTGCGAGGAGAAACGAAAGT
TGTTGGCCAGCAGTTGGTGAAGCGCTCCGTGGAAGAGATTGGCTGGTGGG
TTACGAAGGAGCGGTCCGGCCCTTCCTCCCAGTTGGAGTAAGTTGATGTG
CGGCGGGCTGTTCTCTCGTGTGGCAAGGCTTCGCTCTTGCGCAATCAATC
AACCTCAAGGAGGGTACGCAAGTATGTATCCTCGCCGCTTGGTCTTGAGA
GCAACGTCTGTGGCCTGCCGGTGTAGTGCGGTGCGCGTGCGGATCGTCGG
CAGATCGTCGACGAAGAGGACAGAGCTCGACGAGTGGATGGCCGAAATAT
CCCCCCCCCCGTCGTATGGGGTTGGTGGTGGTTGTGCTAGCGCGAGGTGG
AAATGACGCTTTTGAGCGTGCTAATCATAATCGTACCTGGGGTCATAGTC
GTACAAAAACTGGCACGAAGTCGTGGGTTTGGTGCAAGGGCGGTCGGTTG
TTCGGCATGGTCTCGAGGTTGTTGTGGTGTTTATTTGTTCCCTACAGAAA
CGTGATAGACTACATCGAGTAAACGCTTTTGCGGCAAGGACGGGTGCAGG
TAATTCTTCTTTCGGTTTGGTGGTATATGTATGCTGTACTTTTGCCCGCC
TGTTTGTTGCACGCTTACTACGGTGTTTGCCGTACACCTTTAGGGTGTAC
TCCACACCGCCCTTGTTGTGTGCGACGGCGGCGAGTGTTTTCTTGTAGCC
AAGATAATATATAAATGAGACGAAAAGAACAACAGTGGGTGGCGGGTGTT
TCTGTTGATATGGTGTGTCTGTTTTGTATTTTGTGTAAATGTTATGCTCC
CGGGTGAAAGCAATATGGGTCGGGTTGACACAATTTGTTATCTTCTCGTG
GTTGGTTGGCTTTGTAGTCTAGTAGTGTTTACATACGTTGCGGGCAACGG
GAGGGTGCGGAGGAAGCATGGGGGTGTGGGAACGATGGCAGCAGTTGTCG
AGTTTTGGTAGACTCGTGTACTAAAATACAGTGTACTCTCCAGATCGGAT
TAGCATTTGATCGAAACTTGACTGTTTGAGGTCGGTTTGGAGCCTCTTTT
CCCGGAGTTTGCAGGGACATGCTGTTGGATAAGATGCCCGCTCGTTGTGA
TTACCCCTCCTTTCCCTCCACCTGGTCCATCCAACCAGTTTCCTTTCTCC
CAAAGAAGGGTAGAATACAAGGCTGAATATTGAATCCCAATTTTTTCGAG
CGTGCCGGCAAACAAACGGACTCCTCTCGGGTTTGCGCCTGTTTATTACT
TATTTTAGAAGAGGGTGATACGAGTCTGTGTCTGTATCTTGGTGCTGTAG
ACCAGCTGGGAAGTGGCACCAGCAAGTAGTTTACCGTTGCTTTGTTGCCT
GGGTGCCAGCCCGTGGTTCAAAGCCTGCCTTCCTCCGAGAGTGGTAGATG
ATGGCTTCGTCGGCCTCGTACAAACATGAGGTTTTCTTGTTTTCCGTCGC
TCGTGCTTCCAAATTGGGATATATCTATCTGTTTGACGGCTCTTCTTATC
TGGTGTCTTTGGACGAAGTGTTTGTTTGTCACCCGTGGGTGGTTCTGTTA
CGACCGCTTGCTTGTTTCTCCGCTTCTTGCGTCGGCAACGGCTTCCTCGC
GTTGCGCTTTTGTTTTGTTCGTCGTGGTGTTCTCTTCTTGGTTACAATCG
TTATTTTATCCTGCTTTCTATCTTTCTACCTGTTCTGGGACTGCTGTACG
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig712:8311..11811-

>mRNA_Ecto-sp13_S_contig712.18219.1 ID=mRNA_Ecto-sp13_S_contig712.18219.1|Name=mRNA_Ecto-sp13_S_contig712.18219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig712:8311..11811- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGGCCGCGGCCGCCGCCACTGCCGCCGATGGCAGCGGCGGAGGT
GAAGACAGGGAGGGAGGGGCTGGTGCAGGGGGCGCCAGCGTTTCCAGTGC
GGGAGATGGGGACGGCGGAAGCGGCACATTGGACGATCAGCAACAGCAGC
AGCAGCAGGCCCAACAAGGGCCGGAGGACGAGGAAGCGTACTACGAGGCC
GACGAAGAGGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGATATGGTACC
TCATGGCAGGGACGTGGCTGAGCAGATGGCACGCGTACGTCCTCTCCGGG
ACGGGCGAGGATCTGGACTTCCCCACGCCGTCGCCGGGCCCGATAACAAA
CGGGGACATCGTTGACGAGAACCTTGTCCCGATACCCGGGAAGGTGGCGG
GGAAACACTATCGAGGCGCCATGATCGAAGTGTGGAGGTACCTTCACGAC
CGTTATGGAGGCGGGCCCGTGATATGCCGGAGCGACCCCGACGGCCTGTA
CGAGACCAAGACATCGAAGCACGGCGATTCTTCGCCGCCATTGCCGTAG
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