mRNA_Ecto-sp13_S_contig712.18218.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig712.18218.1
Unique NamemRNA_Ecto-sp13_S_contig712.18218.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig712.18218.1 vs. uniprot
Match: D8LS71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS71_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.770e-37
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:  128 MSSPQSAPVAGGAIGGGGQKPKQGATRTMSTMMGSLDPLVVAGVAVYVATAYAFWGIFREYFDWTESLAISFKVSM*R 361
            MS+PQSAPVAGGAIGGGGQKPKQGATRT+STMMGSLDPLVVAGVAVYVATAYAFWGIFREYFDWTESLAISFK  + R
Sbjct:    1 MSTPQSAPVAGGAIGGGGQKPKQGATRTVSTMMGSLDPLVVAGVAVYVATAYAFWGIFREYFDWTESLAISFKDGLPR 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig712.18218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS71_ECTSI1.770e-3792.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig712contigEcto-sp13_S_contig712:5129..7619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size596
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463977.0533829-UTR-Ecto-sp13_S_contig712:5128..53981681463977.0533829-UTR-Ecto-sp13_S_contig712:5128..5398Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig712 5129..5398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463977.0648336-CDS-Ecto-sp13_S_contig712:5398..55801681463977.0648336-CDS-Ecto-sp13_S_contig712:5398..5580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig712 5399..5580 -
1681463977.0746722-CDS-Ecto-sp13_S_contig712:7477..76191681463977.0746722-CDS-Ecto-sp13_S_contig712:7477..7619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig712 7478..7619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig712.18218.1prot_Ecto-sp13_S_contig712.18218.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig712 5399..7619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig712.18218.1

>prot_Ecto-sp13_S_contig712.18218.1 ID=prot_Ecto-sp13_S_contig712.18218.1|Name=mRNA_Ecto-sp13_S_contig712.18218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
FAIFVGRQHRRHHFSSLPPFFGTTHAAEEDDRRRRVALLSPAHVVSTERS
RCRRRHRRRWPETEAGSYEDDVDDDGVFGPPGGGGGGGVRGHGLRLLGNL
PGILRLD*
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mRNA from alignment at Ecto-sp13_S_contig712:5129..7619-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig712.18218.1 ID=mRNA_Ecto-sp13_S_contig712.18218.1|Name=mRNA_Ecto-sp13_S_contig712.18218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig712:5129..7619- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCCATTTTTGTCGGTAGACAACACCGCCGCCACCATTTTTCATCTTT
ACCCCCATTCTTCGGCACCACACACGCCGCCGAGGAGGACGACAGGAGAC
GCAGGGTCGCACTTCTCAGCCCCGCTCATGTCGTCTCCACAGGTTGGTGA
TTGGCTGCTCGGCTACCGTTCAGCACGGGGAGGCGAAGCGGAAGTATACA
GTCAGTCGCTCTCAAATAACACGCATATTAATACAGACATCCTGTCACTG
CCGGCTTTGCTATCGTTGTCTCCTCTTGACGAGCACATAGTACACCGACT
GCAAGGTGGCATAACTTTGAAGACTGGCGCATGCCGGTGAACCAATGGTG
CCGTCGACAAGTGGCAGCAGTGTTTGCATGATCAACACGGTCACTCCCGT
CGTGTGTCCTGAGGTTCATGTTGAAGCGTCTCTACAAGAGCAGTAGACGT
CACCTAGTTTCGTCCTTTTGCATGCACTTAGAATATTTGTCCTTGGGTAA
AGAGGACAGCAGTAGCTGCGGTGGTATGGTACAAGGAGAATACGCTACCC
TACAGGTGGATGTACTGGTAAGATCTCTCTTTCTCTCTTCTCTCTCGCTC
TTGCTCTCCCTACTCGTCGTTCTCTTGGGGGACGCGCGTGTGCAGAAGGC
GACATGACAGACAAACACATTTTTCAAAATCAAATCTCCGTAGATCTATA
GCCAGTCCGCGGTACAGTCGTGTGTGGTACGTATGCATGTAGTAAGGCGC
GACATAACAATATCAAACATGTCCTTGTGGCTTTTGTGTTCCCGCCAAAC
TCGCTGCCTCCGTCCAACTCCCACGGGTGCCTACGAGATGGCGAAAATGT
ATTCGTTCGCGAATGGGGTTCAGGTGTACCAATCCTGCATGCACATTGTA
TTGGCAAGTAATTTATCTCAGGAGTACCCTCCTACTTGCGGTACTTGCGG
TACACGATGCACGCCTACTATTTACTGCTGCACTACAGTACCATGTGCAC
GACACAACAAGCGGTGGTTGACGTACGCCCGAGTTTCCCATCGTGGCGGT
GTAAATAAATAAAGCCAGACAAAAACTTCAAGAGTGTTTCAACAACGGTT
CCAATATGGAGATACTGCTGCACTTACGTATGATGCATGTAGCTGAAAGT
GCGCCATGCGATCTGACGGTGTATGACGTAACGACGTATCTGTGGGTATA
GATGCAGCAGTACAATGGGAAAATGTGCCAAAGTTGCACCGCATCTCGTG
TGGATCTTCATTCTCGTGGGTTGTGTTGTTTCCATGGCTAAAATGCATGC
AACATCATCACACAAAGGGAGCTTGACCTGTTGTGAAAGAAGCACGGAAG
GGGCAAACGCAACAAGACCGGCATTTTTCTGTTCGGACGTGCTCCAAACA
ACCCTGGGGCGCAAGTCTAGGGTGGGATCACGCAATAATTACCGCCCACG
TGTAGGATGTCCCAGAAAATGGTCTTGGACGGTAACATTGGACGGTTACA
TTTGAGAGATAAGATGACGCATGCCTTCCCGCCTAGTCTACAGAGGAGGC
ACAAAAGCTCCGCAAACTATTTAGGCAAAGAGGGGCACGGAAAATCGGCT
CTGTGAGTTTTGATTACATTTGGCCAATGCATCCCTCCAGAACTCGGCCT
CGTTCCCCTTCGTGGGAATTGCTCAGAAGTAATTCTATGTTCTCGTGTGG
GCCAAAAGTCCACCTGGGAGATGGATCCTCTCGACCAGCCACTTGATTGA
AAAATAGAAAAATAGATTCTGGGGATGGTGGACGTCGCTTCGAATGGCGT
GTGAGCGGGTCAAATTTTGGACGGGGACGGACGTGATCAGACGACGAATG
CCCGGTGGGAACGAACGGTGCCCGGTCTCTAGAGGAGCGTGGTGTAGCCT
AATGATCGCAAGATCCCCCCTCTCATGCACCCTTCCCGGCGTATCTAAGG
ACCGACCGACCGACCGCAATCAGCTCCCTCCCTCCCTCCCTCCCCGCCCC
CTTCTCCCCCTCCCCCTTTCGGCCTCCTTGCAAAAAAAGAGCGCTCCCGT
TGCCGGCGGCGCCATCGGCGGCGGTGGCCAGAAACCGAAGCAGGGAGCTA
CGAGGACGATGTCGACGATGATGGGGTCTTTGGACCCCCTGGTGGTGGCG
GGGGTGGCGGTGTACGTGGCCACGGCCTACGCCTTCTGGGGAATCTTCCG
GGAATACTTCGACTGGACTGAATCGTTGGCCATTTCATTCAAGGTGTCCA
TGTAAAGATGAAATGCCCACATATATGATAAGAACTCGGCAGCTGAGAGA
CATCTTCGAGCCTCGAAAAAATCTTACGTTCCTTTTTTGTGTGAGCCCGG
TCAAGAACCTCTACGCCACAACGTTATGTAGCGGCCATGTGTATGTAGCA
CATGAGGGGAGCTAAGAAGATCAACCTCGGCAAATATTATTGCAGTGGGG
GGCCCTAATAACGCCGGTATGTGCCCAGCGCCTCGACCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig712:5129..7619-

>mRNA_Ecto-sp13_S_contig712.18218.1 ID=mRNA_Ecto-sp13_S_contig712.18218.1|Name=mRNA_Ecto-sp13_S_contig712.18218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig712:5129..7619- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCCATTTTTGTCGGTAGACAACACCGCCGCCACCATTTTTCATCTTT
ACCCCCATTCTTCGGCACCACACACGCCGCCGAGGAGGACGACAGGAGAC
GCAGGGTCGCACTTCTCAGCCCCGCTCATGTCGTCTCCACAGAGCGCTCC
CGTTGCCGGCGGCGCCATCGGCGGCGGTGGCCAGAAACCGAAGCAGGGAG
CTACGAGGACGATGTCGACGATGATGGGGTCTTTGGACCCCCTGGTGGTG
GCGGGGGTGGCGGTGTACGTGGCCACGGCCTACGCCTTCTGGGGAATCTT
CCGGGAATACTTCGACTGGACTGA
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