mRNA_Ecto-sp13_S_contig7113.18211.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7113.18211.1
Unique NamemRNA_Ecto-sp13_S_contig7113.18211.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7113.18211.1 vs. uniprot
Match: A0A6H5JFN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN0_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 3.630e-85
Identity = 178/199 (89.45%), Postives = 180/199 (90.45%), Query Frame = 1 
Query:    1 KRARVGGGGAGFAEATPALAPTAATLGAYGSAPLSEEQPNSSPGSLSPTPPSTREPSPPPLSTQEGSVASAATDGNNCGDDYYDSRRDVGDRNGGXXXXXXXXXXXXXTAAVGGSGVVGGVAAGKVVRGACGAAAGTEGASNDGRSAMLVSGDGSASGFVLRVPGEAAEDGGGAQVGVAVAAARGERGCSAEKPSKLRQ 597
            KRARVGG GAGFAEATPALA TAA LGA GSAPLSEEQPN SPGSLSPTPPSTREPSPPPLSTQEGSVASAATDGNNCGDDYYDSR+DVGDRN GXXXXXXXXXXXXX AA  G  VVGG AAG +VRGAC AAAGTEGA NDGRSAMLVSGDGSASGFVL VPGEAAEDGGGAQVGVAVAAARGER CS EKPSK RQ
Sbjct:  442 KRARVGGSGAGFAEATPALASTAAALGADGSAPLSEEQPNLSPGSLSPTPPSTREPSPPPLSTQEGSVASAATDGNNCGDDYYDSRQDVGDRNDGXXXXXXXXXXXXXXAAAAGRWVVGGFAAGYIVRGACDAAAGTEGAPNDGRSAMLVSGDGSASGFVLGVPGEAAEDGGGAQVGVAVAAARGERACSGEKPSKPRQ 640
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7113.18211.1 vs. uniprot
Match: D8LCH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.470e-25
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:  352 VGGVAAGKVVRGACGAAAGTEGASNDGRSAMLVSGDGSASGFVLRVPGEAAEDGGGAQVGVAVAAARGE-RGCSAEKPSKLR 594
            VGGVAAG V+RGA GAAAGTEGA+NDGRSAMLVSGDG ASGFVLRVPGEAAEDGG AQ GVAVAAARG  R CSAEKP KL+
Sbjct:  326 VGGVAAGSVLRGARGAAAGTEGAANDGRSAMLVSGDGGASGFVLRVPGEAAEDGGDAQAGVAVAAARGGLRACSAEKPPKLK 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7113.18211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFN0_9PHAE3.630e-8589.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCH2_ECTSI1.470e-2585.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7113contigEcto-sp13_S_contig7113:4647..5243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size599
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005040.2
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463976.5215976-CDS-Ecto-sp13_S_contig7113:4646..52431681463976.5215976-CDS-Ecto-sp13_S_contig7113:4646..5243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7113 4647..5243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7113.18211.1prot_Ecto-sp13_S_contig7113.18211.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7113 4647..5243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7113.18211.1

>prot_Ecto-sp13_S_contig7113.18211.1 ID=prot_Ecto-sp13_S_contig7113.18211.1|Name=mRNA_Ecto-sp13_S_contig7113.18211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
KRARVGGGGAGFAEATPALAPTAATLGAYGSAPLSEEQPNSSPGSLSPTP
PSTREPSPPPLSTQEGSVASAATDGNNCGDDYYDSRRDVGDRNGGGGRGR
KRKEREEETAAVGGSGVVGGVAAGKVVRGACGAAAGTEGASNDGRSAMLV
SGDGSASGFVLRVPGEAAEDGGGAQVGVAVAAARGERGCSAEKPSKLRQ
back to top

mRNA from alignment at Ecto-sp13_S_contig7113:4647..5243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7113.18211.1 ID=mRNA_Ecto-sp13_S_contig7113.18211.1|Name=mRNA_Ecto-sp13_S_contig7113.18211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7113:4647..5243+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGGGCGAGAGTCGGCGGCGGCGGTGCCGGATTCGCCGAAGCCACGCC
CGCGCTCGCTCCTACGGCCGCTACCCTTGGTGCCTATGGTTCTGCGCCTC
TTTCGGAAGAGCAGCCGAACTCGTCGCCCGGCTCTCTATCCCCGACGCCG
CCCTCGACAAGGGAGCCGTCGCCGCCGCCGCTGTCCACTCAGGAAGGCTC
GGTCGCGTCCGCTGCGACGGACGGCAACAATTGCGGCGACGACTATTACG
ACAGTCGTCGAGACGTTGGGGACCGCAACGGCGGCGGCGGCCGGGGGCGC
AAGCGGAAGGAGAGGGAAGAGGAGACGGCCGCCGTGGGAGGCAGCGGGGT
GGTGGGTGGGGTCGCGGCTGGTAAAGTCGTGAGAGGCGCATGCGGTGCCG
CCGCTGGGACTGAAGGTGCGTCCAACGACGGAAGAAGTGCGATGCTCGTG
TCAGGCGATGGTAGCGCTTCAGGGTTTGTGTTGAGAGTGCCGGGGGAAGC
AGCCGAAGACGGTGGAGGCGCTCAAGTAGGCGTAGCCGTGGCGGCGGCGC
GAGGGGAGCGCGGGTGCTCGGCTGAAAAGCCATCGAAGCTGCGGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7113:4647..5243+

>mRNA_Ecto-sp13_S_contig7113.18211.1 ID=mRNA_Ecto-sp13_S_contig7113.18211.1|Name=mRNA_Ecto-sp13_S_contig7113.18211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7113:4647..5243+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGGGCGAGAGTCGGCGGCGGCGGTGCCGGATTCGCCGAAGCCACGCC
CGCGCTCGCTCCTACGGCCGCTACCCTTGGTGCCTATGGTTCTGCGCCTC
TTTCGGAAGAGCAGCCGAACTCGTCGCCCGGCTCTCTATCCCCGACGCCG
CCCTCGACAAGGGAGCCGTCGCCGCCGCCGCTGTCCACTCAGGAAGGCTC
GGTCGCGTCCGCTGCGACGGACGGCAACAATTGCGGCGACGACTATTACG
ACAGTCGTCGAGACGTTGGGGACCGCAACGGCGGCGGCGGCCGGGGGCGC
AAGCGGAAGGAGAGGGAAGAGGAGACGGCCGCCGTGGGAGGCAGCGGGGT
GGTGGGTGGGGTCGCGGCTGGTAAAGTCGTGAGAGGCGCATGCGGTGCCG
CCGCTGGGACTGAAGGTGCGTCCAACGACGGAAGAAGTGCGATGCTCGTG
TCAGGCGATGGTAGCGCTTCAGGGTTTGTGTTGAGAGTGCCGGGGGAAGC
AGCCGAAGACGGTGGAGGCGCTCAAGTAGGCGTAGCCGTGGCGGCGGCGC
GAGGGGAGCGCGGGTGCTCGGCTGAAAAGCCATCGAAGCTGCGGCAG
back to top