mRNA_Ecto-sp13_S_contig711.18205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig711.18205.1
Unique NamemRNA_Ecto-sp13_S_contig711.18205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: A0A6H5KYV8_9PHAE (Dynamin-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYV8_9PHAE)

HSP 1 Score: 815 bits (2106), Expect = 6.000e-294
Identity = 424/430 (98.60%), Postives = 426/430 (99.07%), Query Frame = 1 
Query:  184 GAVTPEVKLRQYRSAXXXXXXX-EVEGNQEQDKIARALLSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAARPGNR 1470
            GAVTPEVKL QYRSAXXXXXXX E+ G+QE DKIARALLSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAARPGNR
Sbjct:  166 GAVTPEVKLSQYRSAXXXXXXXXELGGDQEHDKIARALLSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAARPGNR 595
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: A0A835ZF39_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF39_9STRA)

HSP 1 Score: 671 bits (1730), Expect = 2.320e-239
Identity = 336/428 (78.50%), Postives = 378/428 (88.32%), Query Frame = 1 
Query:  184 GAVTPEVKLRQYRSAXXXXXXXEVEGNQEQDKIARALLSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAARPGN 1467
            GAVTP V L QY  +             + D + ++ L N DKE+IF+GLK++YRKKILPLEESS++ HFHSP +NPADFEAKPMVLIVGQYSVGKTSFIRSL+ +DFPGQRVGPEPTTDRF A+ +GEDE VMPGHALAMQAD+PFRSLQQFGNNFL+KFEGSVV++PILRNITLVD+PGVLSGEKQRIGRDYDF++VISWFAERADLIV+MFDAHKLDISDELKMVIDTLKPHHDK+RVLLNKAD IDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFW+APL+N +N  LLE+EK DL+EELM LP+NAVVRRINELVKRARSVKVHAYIIHYLRKQMPY+  K+EKQ +LI RLDQEF+ACARRY LPLGDFP V KF+R LREI+DISKF  LDKSLV EMDKVF+ +IP+LME+A R G+
Sbjct:    2 GAVTPPVTLSQYAPSARAAA-----AEAKADLVDQSHLRNMDKELIFEGLKRMYRKKILPLEESSKFPHFHSPSLNPADFEAKPMVLIVGQYSVGKTSFIRSLVGKDFPGQRVGPEPTTDRFTAIMYGEDEGVMPGHALAMQADQPFRSLQQFGNNFLSKFEGSVVNSPILRNITLVDSPGVLSGEKQRIGRDYDFSAVISWFAERADLIVVMFDAHKLDISDELKMVIDTLKPHHDKVRVLLNKADAIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWDAPLANLENALLLEREKRDLIEELMGLPDNAVVRRINELVKRARSVKVHAYIIHYLRKQMPYLYKKEEKQAELIARLDQEFVACARRYSLPLGDFPNVGKFKRKLREIRDISKFSKLDKSLVAEMDKVFTHEIPRLMERAQRGGH 424
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: A0A4D9D5E5_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5E5_9STRA)

HSP 1 Score: 593 bits (1530), Expect = 1.970e-207
Identity = 289/388 (74.48%), Postives = 339/388 (87.37%), Query Frame = 1 
Query:  295 LSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAAR 1458
            L+  DKE  F+ LK+LYRKK+LPLE +S+YA FHS P+NPADFEAKPMVL++GQYSVGKTSFIRSLL+ DFPGQRVGPEPTTDRF+AV HG + R++PGHALAMQADKPFR +  FGNNFLTKFE + V APILRNITL+D+PG+LSGEKQR+GRDYD+ +VI WFA+RADLI+IMFDAHKLDISDEL++V+D L+ H DK+R+LLNKAD ID+QQLMR+YGALMWSLGKV+ TPEVCRVYIGSFWE PL +  NRFLLEKEK DLL EL  LP+NAVVRRINELVKRARSVKVHAY+IHYLRKQ+P + GK EKQ KL++ L +EF+ACARRYGLPLGDFP + KFR  L E+KD+ KF  LDK++V EMD+VFS DIPKL+EKA+R
Sbjct:  122 LTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLRKFPKLDKAMVQEMDRVFSHDIPKLVEKASR 509
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: A0A7S2R5Z4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5Z4_9STRA)

HSP 1 Score: 584 bits (1505), Expect = 2.920e-205
Identity = 276/383 (72.06%), Postives = 331/383 (86.42%), Query Frame = 1 
Query:  319 IFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAARPGN 1467
            IF+ LKKLY++K+ PLE + +Y HFHSPP++PADF+AKPMVL++GQYSVGKTSFIRSL++RDFPGQR+GPEPTTDRF A+ HG ++R++PGHALAMQ+D+PF+ LQ FGNNFLTKFEG+ VD+P LRN+TL+DTPGVLSGEKQR+GRDYDF +V+SWFAERAD+I+++FDAHKLDISDELK  +D L+PH DK+RVLLNKAD +  QQLMRVYGALMW LGKV+ TPEVCRVY+GSFW+ P+   +N  LL +EK DLL EL  LP NA +RRINELVKR RSVKVHAYIIHYLRKQMPY  GK+EKQE+LI RLD+EF+ CARRYGLP GDFP + KFR +L EIKDISKF  LDKS+V+EMD+V S DI KL+E+ A PGN
Sbjct:   30 IFETLKKLYKRKVRPLEVAMKYGHFHSPPLSPADFDAKPMVLLLGQYSVGKTSFIRSLVQRDFPGQRIGPEPTTDRFTAIMHGAEDRLLPGHALAMQSDRPFQGLQPFGNNFLTKFEGAEVDSPFLRNVTLIDTPGVLSGEKQRMGRDYDFTAVMSWFAERADMILVLFDAHKLDISDELKSALDVLRPHQDKVRVLLNKADMVTPQQLMRVYGALMWQLGKVLNTPEVCRVYLGSFWDQPMQVNENHALLVREKEDLLGELGGLPRNAALRRINELVKRTRSVKVHAYIIHYLRKQMPYTFGKKEKQERLIARLDREFVNCARRYGLPRGDFPDLNKFRNALMEIKDISKFPKLDKSMVYEMDRVLSNDIAKLLEQCAVPGN 412
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: A0A7S4J6K8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6K8_9STRA)

HSP 1 Score: 564 bits (1454), Expect = 7.580e-197
Identity = 272/386 (70.47%), Postives = 328/386 (84.97%), Query Frame = 1 
Query:  295 LSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKA 1452
            LS  DK+VIF GLK+LYRKKILPLE SS+Y HFHSPPM P+DFEAKPMVL++GQYSVGKTSFIR LL RDFPGQR+GPEPTTDRF A+   E ++++PG AL  Q+D+PFR L  FGNNFL++ EG  +D+PILRN+T+VDTPG+LSG+KQ IGR+YD+ +V+ WFAER+DLIVIMFDAHKLDISDELK VI+ +KPH DK+RV+LNKAD + TQ LMRVYGALMW+LGKVM TPEVCRVY+GSFW +PL N +   LLE+EK DL  ++  LP+NAV+RRINELVKRAR+VKVHAYIIHYLRKQ+PY  GK+EKQ +LI RL++EF+ CARRY LP GDFP +E FR++L EIKD+S+F  LDK +V EMDKVFS DIP+L+EKA
Sbjct:   79 LSQFDKDVIFRGLKRLYRKKILPLELSSKYGHFHSPPMGPSDFEAKPMVLLLGQYSVGKTSFIRYLLGRDFPGQRIGPEPTTDRFTAIMLSESDKIVPGAALCSQSDRPFRGLSPFGNNFLSRLEGVEMDSPILRNVTMVDTPGILSGQKQSIGRNYDYDAVMKWFAERSDLIVIMFDAHKLDISDELKRVIEIMKPHADKVRVVLNKADGVSTQHLMRVYGALMWNLGKVMMTPEVCRVYMGSFWASPLQNAEQASLLEREKMDLFRDIAELPQNAVMRRINELVKRARAVKVHAYIIHYLRKQLPYTWGKREKQRRLIDRLEREFVMCARRYELPRGDFPPIEPFRQALLEIKDLSEFPKLDKKMVKEMDKVFSVDIPELLEKA 464
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: B8BZ45_THAPS (Probable eh domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ45_THAPS)

HSP 1 Score: 559 bits (1440), Expect = 4.800e-196
Identity = 273/379 (72.03%), Postives = 321/379 (84.70%), Query Frame = 1 
Query:  319 IFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGED-ERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKA 1452
            IF GLK+LYRKKI PLE SS+Y HFHSPP++P+DF+AKPMVL++GQYSVGKTSFIR LL RDFPGQR+GPEPTTDRFVA+  GE  ++++PG AL  QAD+PFR L  FGNNFL++FEG  +D PIL NITLVDTPG+LSG+KQ IGR+YD+  V+ WFAERADLI++MFDAHKLDISDELK VI+ LKPH DKMRVLLNKAD+I TQQLMRVYGALMWSLGKVM TPEVCRVY+GSFW APL N +   LL +EK DL  ++  LP+NAV+RRINELVKRAR+VKVHAYIIHYLRKQ+PY  GK+EKQ +LI RLD+EF+ CARRY LP GDFP++E FR++L EIKD+S+   LDK +V EMDKVFS DIP L+E A
Sbjct:    1 IFSGLKRLYRKKIRPLELSSKYGHFHSPPLSPSDFDAKPMVLLLGQYSVGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAIVKGESGDKIIPGAALCSQADRPFRGLSPFGNNFLSRFEGVEMDCPILNNITLVDTPGILSGQKQSIGRNYDYEQVMKWFAERADLIIVMFDAHKLDISDELKRVIELLKPHQDKMRVLLNKADSISTQQLMRVYGALMWSLGKVMMTPEVCRVYMGSFWGAPLKNKEQSALLTQEKLDLFNDIAQLPQNAVMRRINELVKRARAVKVHAYIIHYLRKQLPYTWGKREKQRRLIDRLDREFVMCARRYELPRGDFPELEPFRQALLEIKDLSEIHKLDKKMVKEMDKVFSVDIPNLLEAA 379
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: A0A7S1ZTF2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZTF2_TRICV)

HSP 1 Score: 564 bits (1453), Expect = 3.760e-195
Identity = 273/386 (70.73%), Postives = 330/386 (85.49%), Query Frame = 1 
Query:  295 LSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKA 1452
            ++  DK++IF GLK++YRKKILPLE SS+Y HFHSPP++P+DFEAKPMVL++GQYSVGKTSFIR LL RDFPG R+GPEPTTDRF AV  G+ ++++PG AL  QAD+PFR L  +GNNFL++FEG  +DAPILRNITLVDTPG+LSG+KQ IGR+YD+ SV+ WFAER+DLIVIMFDAHKLDISDELK VI+ +KPH DK+RV+LNKAD + TQ LMRVYGALMW+LGKVM TPEVCRVY+GSFW APL N +   LL +EK DL  ++  LP+NAV+RRINELVKRARSVKVHAYIIHYLRKQ+PY  GK+EKQ++LI RL++EF+ CARRY LP GDFP +E FR++L EIKD+S+F  LDK +V EMDKVFS DIP+L+EKA
Sbjct:  181 ITQFDKDMIFAGLKRMYRKKILPLELSSKYGHFHSPPLSPSDFEAKPMVLLLGQYSVGKTSFIRYLLGRDFPGIRIGPEPTTDRFTAVMAGDTDKIVPGAALCSQADRPFRGLSPYGNNFLSRFEGVEMDAPILRNITLVDTPGILSGQKQSIGRNYDYESVMRWFAERSDLIVIMFDAHKLDISDELKRVIELMKPHADKVRVVLNKADGVSTQHLMRVYGALMWNLGKVMMTPEVCRVYMGSFWAAPLQNTEQAALLTREKLDLFNDIAQLPQNAVMRRINELVKRARSVKVHAYIIHYLRKQLPYTFGKREKQKRLIGRLEREFVMCARRYELPRGDFPALEPFRQALLEIKDLSEFPKLDKKMVKEMDKVFSVDIPELLEKA 566
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: W7TPP0_9STRA (Receptor mediated endocytosis family member (Rme-1) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPP0_9STRA)

HSP 1 Score: 553 bits (1424), Expect = 5.090e-193
Identity = 268/357 (75.07%), Postives = 313/357 (87.68%), Query Frame = 1 
Query:  295 LSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDI 1365
            L+  DKE  F+ LK+LYRKK+LPLE +S+YA FHS P+NPADFEAKPMVL++GQYSVGKTSFIRSLL+ DFPGQRVGPEPTTDRF+AV HG + R++PGHALAMQADKPFR +  FGNNFLTKFE + V APILRNITL+D+PG+LSGEKQR+GRDYD+ +VI WFA+RADLI+IMFDAHKLDISDEL++V+D L+ H DK+R+LLNKAD ID+QQLMR+YGALMWSLGKV+ TPEVCRVYIGSFWE PL +  NRFLLEKEK DLL EL  LP+NAVVRRINELVKRARSVKVHAY+IHYLRKQ+P + GK EKQ KL++ L +EF+ACARRYGLPLGDFP + KFR  L E+KD+
Sbjct:   63 LTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: A0A7S4R6J9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R6J9_9STRA)

HSP 1 Score: 558 bits (1439), Expect = 1.680e-192
Identity = 269/386 (69.69%), Postives = 324/386 (83.94%), Query Frame = 1 
Query:  295 LSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKA 1452
            LS  DK++IF GLK++YRKKI+PLE SS+Y HFHS P++P+DF+AKPMVL++GQYSVGKTSFI+ +L RDFPG R+GPEPTTDRF A+ HG  ++V PG AL  Q D+PFR L  FGNNFL++ EG   D+PILRNITLVDTPG+LSG+KQ +GR+YD+ +V+ WFAERADLI+IMFDAHKLDISDELK VI+ +KPH DK+RVLLNKAD + TQ LMRVYGALMW+LGKVM TPEVCRVY+GSFW APL N +   LLE+EK DL  ++  LP+NAV+RRINELVKRAR VKVHAYIIHYLRKQ+PY  GK+EKQ +LI RLD+EFL CARRY LP GDFP +E FR++L EIKD+S+F  LDK +V EMDKVFS DIP+L+E+A
Sbjct:  216 LSQFDKDLIFAGLKRMYRKKIMPLELSSKYGHFHSSPLSPSDFDAKPMVLLLGQYSVGKTSFIKYMLGRDFPGIRIGPEPTTDRFTAIMHGNTDKVTPGAALCSQHDRPFRGLSPFGNNFLSRLEGVECDSPILRNITLVDTPGILSGQKQNVGRNYDYDAVMKWFAERADLIIIMFDAHKLDISDELKRVIEMMKPHSDKVRVLLNKADAVSTQHLMRVYGALMWNLGKVMMTPEVCRVYMGSFWGAPLQNTEQASLLEQEKFDLFTDISQLPQNAVMRRINELVKRARGVKVHAYIIHYLRKQLPYTWGKREKQRRLIDRLDREFLMCARRYELPRGDFPPLEPFRQALLEIKDLSEFPKLDKKMVREMDKVFSVDIPELLERA 601
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Match: K0SHE8_THAOC (Dynamin-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHE8_THAOC)

HSP 1 Score: 561 bits (1447), Expect = 7.100e-192
Identity = 275/387 (71.06%), Postives = 327/387 (84.50%), Query Frame = 1 
Query:  295 LSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGED-ERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKA 1452
            LS+ DK+VIF GLK+LYRKKI PLE SS+Y HFHSPP++P+DF++KPMVL++GQYSVGKTSFIR LL RDFPGQR+GPEPTTDRFVA+  G+  ++++PG A+  QAD+PFR L  FGNNFL++FEG  +D+PIL NITLVDTPG+LSG+KQ IGR+YD+  V+ WFAERADLI+IMFDAHKLDISDELK VI+ LKPH DKMRVLLNKAD+I TQQLMRVYGALMWSLGKVM TPEVCRVY+GSFW APL N +   LL +EK DL  ++  LP+NAV+RRINELVKRARSVKVHAYIIHYLRKQ+PY  GK++KQ +LI RL+QEF+ CARRY LP GDFP++E FR++L E KD+S    LDK +V EMDKVFS DIP L+E A
Sbjct:  345 LSHFDKDVIFSGLKRLYRKKIRPLELSSKYGHFHSPPLSPSDFDSKPMVLLLGQYSVGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAILKGDGVDKIVPGAAMCSQADRPFRGLSPFGNNFLSRFEGVEMDSPILNNITLVDTPGILSGQKQNIGRNYDYEQVMKWFAERADLIIIMFDAHKLDISDELKRVIELLKPHQDKMRVLLNKADSISTQQLMRVYGALMWSLGKVMMTPEVCRVYMGSFWGAPLKNREQAALLTQEKQDLFNDIAQLPQNAVMRRINELVKRARSVKVHAYIIHYLRKQLPYTWGKRDKQLRLIGRLEQEFVMCARRYELPRGDFPELEPFRQALLEYKDLSDVHKLDKKMVKEMDKVFSVDIPNLLEAA 731
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig711.18205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYV8_9PHAE6.000e-29498.60Dynamin-type G domain-containing protein n=2 Tax=E... [more]
A0A835ZF39_9STRA2.320e-23978.50P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9D5E5_9STRA1.970e-20774.48Dynamin-type G domain-containing protein n=1 Tax=N... [more]
A0A7S2R5Z4_9STRA2.920e-20572.06Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S4J6K8_9STRA7.580e-19770.47Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8BZ45_THAPS4.800e-19672.03Probable eh domain-containing protein (Fragment) n... [more]
A0A7S1ZTF2_TRICV3.760e-19570.73Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7TPP0_9STRA5.090e-19375.07Receptor mediated endocytosis family member (Rme-1... [more]
A0A7S4R6J9_9STRA1.680e-19269.69Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K0SHE8_THAOC7.100e-19271.06Dynamin-type G domain-containing protein n=1 Tax=T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig711contigEcto-sp13_S_contig711:15894..22329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score815.5
Seed ortholog evalue1.4e-233
Seed eggNOG ortholog2880.D7FPK6
Preferred nameEHD4
Model size1473
KEGG koko:K12469,ko:K12476,ko:K12477,ko:K12483
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001881,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003002,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005901,GO:0005929,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006907,GO:0006937,GO:0006942,GO:0006950,GO:0006996,GO:0007009,GO:0007010,GO:0007034,GO:0007041,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007349,GO:0007389,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0007596,GO:0007599,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008587,GO:0009611,GO:0009653,GO:0009719,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010008,GO:0010033,GO:0010256,GO:0010562,GO:0010604,GO:0010720,GO:0010830,GO:0010831,GO:0010883,GO:0010884,GO:0010885,GO:0010886,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0010959,GO:0010975,GO:0010976,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017016,GO:0017111,GO:0017137,GO:0019220,GO:0019222,GO:0019898,GO:0019899,GO:0019904,GO:0019953,GO:0020016,GO:0020018,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022898,GO:0023051,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030100,GO:0030139,GO:0030154,GO:0030182,GO:0030424,GO:0030865,GO:0030866,GO:0031090,GO:0031094,GO:0031095,GO:0031175,GO:0031253,GO:0031267,GO:0031323,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031410,GO:0031901,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033267,GO:0033365,GO:0034381,GO:0034383,GO:0034498,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042060,GO:0042147,GO:0042221,GO:0042325,GO:0042327,GO:0042391,GO:0042592,GO:0042632,GO:0042670,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043010,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043270,GO:0043679,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044260,GO:0044306,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044441,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0044853,GO:0045121,GO:0045171,GO:0045184,GO:0045202,GO:0045466,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045937,GO:0046530,GO:0046907,GO:0048052,GO:0048193,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048563,GO:0048569,GO:0048592,GO:0048593,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0048878,GO:0050730,GO:0050731,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051924,GO:0051928,GO:0051960,GO:0051962,GO:0055037,GO:0055038,GO:0055088,GO:0055092,GO:0055117,GO:0060041,GO:0060042,GO:0060142,GO:0060143,GO:0060170,GO:0060219,GO:0060255,GO:0060271,GO:0060284,GO:0060341,GO:0060429,GO:0060562,GO:0060627,GO:0060988,GO:0060990,GO:0061024,GO:0061174,GO:0061512,GO:0065003,GO:0065005,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0071212,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071825,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0086036,GO:0090160,GO:0090257,GO:0090596,GO:0097006,GO:0097159,GO:0097320,GO:0097458,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098793,GO:0098805,GO:0098857,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0150034,GO:1901019,GO:1901021,GO:1901363,GO:1901385,GO:1901387,GO:1901739,GO:1901741,GO:1903169,GO:1903358,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1904950,GO:1905952,GO:1905954,GO:1990089,GO:1990090,GO:1990255,GO:1990778,GO:2000026,GO:2001135,GO:2001137,GO:2001257,GO:2001259
Exons11
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
Ec32 ortholog descriptionRME1L1, RME1-like GTPase/ATPase without a C-terminal EH domain
Ec32 orthologEc-12_000940.1
Cds size1473
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig711.18205.1prot_Ecto-sp13_S_contig711.18205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig711 15894..22329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.9719348-CDS-Ecto-sp13_S_contig711:15893..160431681463975.9719348-CDS-Ecto-sp13_S_contig711:15893..16043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 15894..16043 -
1681463975.9861183-CDS-Ecto-sp13_S_contig711:16603..166841681463975.9861183-CDS-Ecto-sp13_S_contig711:16603..16684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 16604..16684 -
1681463975.9971118-CDS-Ecto-sp13_S_contig711:17083..172511681463975.9971118-CDS-Ecto-sp13_S_contig711:17083..17251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 17084..17251 -
1681463976.0082028-CDS-Ecto-sp13_S_contig711:17862..180341681463976.0082028-CDS-Ecto-sp13_S_contig711:17862..18034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 17863..18034 -
1681463976.0256348-CDS-Ecto-sp13_S_contig711:18385..184871681463976.0256348-CDS-Ecto-sp13_S_contig711:18385..18487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 18386..18487 -
1681463976.0369196-CDS-Ecto-sp13_S_contig711:18922..189981681463976.0369196-CDS-Ecto-sp13_S_contig711:18922..18998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 18923..18998 -
1681463976.054283-CDS-Ecto-sp13_S_contig711:19425..195101681463976.054283-CDS-Ecto-sp13_S_contig711:19425..19510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 19426..19510 -
1681463976.0638623-CDS-Ecto-sp13_S_contig711:20014..201081681463976.0638623-CDS-Ecto-sp13_S_contig711:20014..20108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 20015..20108 -
1681463976.072684-CDS-Ecto-sp13_S_contig711:20765..209561681463976.072684-CDS-Ecto-sp13_S_contig711:20765..20956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 20766..20956 -
1681463976.081972-CDS-Ecto-sp13_S_contig711:21547..217001681463976.081972-CDS-Ecto-sp13_S_contig711:21547..21700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 21548..21700 -
1681463976.0916388-CDS-Ecto-sp13_S_contig711:22128..223291681463976.0916388-CDS-Ecto-sp13_S_contig711:22128..22329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 22129..22329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig711.18205.1

>prot_Ecto-sp13_S_contig711.18205.1 ID=prot_Ecto-sp13_S_contig711.18205.1|Name=mRNA_Ecto-sp13_S_contig711.18205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=491bp
MPPQSPPSAMFQQRQVEPAATGNGMAGGAGSTARLGGGGGGGGGGDGGGG
RQWEPPSAASAGAVTPEVKLRQYRSAGGGGGGGEVEGNQEQDKIARALLS
NTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIV
GQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHAL
AMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQR
IGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKM
RVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSN
FDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYL
RKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLR
EIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAARPGNR*
back to top

mRNA from alignment at Ecto-sp13_S_contig711:15894..22329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig711.18205.1 ID=mRNA_Ecto-sp13_S_contig711.18205.1|Name=mRNA_Ecto-sp13_S_contig711.18205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6436bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:15894..22329- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCGCAGTCCCCGCCCTCCGCGATGTTCCAACAGCGGCAGGTGGA
GCCAGCGGCGACCGGCAATGGCATGGCCGGCGGGGCGGGATCGACCGCGC
GGCTTGGAGGAGGCGGCGGCGGTGGCGGCGGCGGCGATGGCGGCGGCGGC
AGGCAGTGGGAACCTCCGTCGGCTGCTAGTGCCGGGGCTGTCACGCCCGA
GGTGAGAAAGAAGGGACGAAGGCCGCGACTTGTTGCGAGTGTAGGCGGTG
AAGCTGGCTGTGCCGGTTGTTGCAGCAGCTGAGTGCATCATGACCGGGCG
ATATGATGGACTTGTAAGTTTGTGCCGTATGCCGGTGTGAAGAGTGAAGT
GCCCTATGCATGCGTGTTACCAGTGCTACTGTAGTCCCCGCGCAACTTCT
ACAGTATACCCACTCCTGCGCAAATTCATCACCCGGTGCAAATTTGATGA
CAACCACCCTAGTGGTCAGCGGCACCTCGCACTTGTACAGCAGTACTTGG
ATGCGAGTTTTCGCTGTGCCCTACAGGATTGGCCTCCCCCCCCCCCGACT
TTGATTAGATGTCGCAAGTTCGAGTACGACACGTAGTGTGATGTTTGGGC
TCTGTTTGTCGCGTTTATCCTGTTGGCAGGTGAAGCTCAGGCAGTATCGC
AGTGCTGGTGGTGGTGGGGGTGGCGGGGAGGTCGAGGGCAACCAGGAACA
AGATAAAATAGCTCGGGCGCTGCTTTCGAACACTGACAAAGAGGTCATCT
TCGACGGGCTCAAGAAGCTCTACAGAAAAAAGGTAAGTTAAGAAGTAGCA
TTCCGCTTCGTCTGCATTGCATTTTCAGATGCATCCAACCTGTCTAGCAG
GGTAGATGCGAACACAAGGGTGCCACTGTTGCTCTTTGCTCTTGATTGAT
GATTGGAAAGGAATGCAGATGCGGGCCATGAGCTAGTGAAAACTGCTGTG
GGCACAATACAAAGGTGAAGCCCCTTTGGTGGAGCACTTCGGGTCGTGGC
ACTTTTCCGATTACCGCTATATCCCTAACGGAAAGATGAGCTTCTCGATC
TCTGATAGGGGATGTACCGGTTCGCGCTACACCATACCACGCGACAAGAC
CACCCGAGCTACACAAGACACCCTGTCGCTGAGTTCAAGAGGATCACTAT
GGATCGCCCTCGAAGCCACTCTCTCACGTCTCAAACTAGACTATGGCTAA
CCCCCCACCCCCCACCCCCGTCTCGTTAGCGTCGCTCCCCTTTCGCCTCT
CACTGGTACTCAAATACCACACATCCCATGTTTCTCACATCCTGCTTTCT
CTCTGTTTTCCACCACCCATTCCATGCGTCGTTTGTTTTCTGACCGCCCT
CGCCTCCGCTCCCGTAACGCCAGATTCTCCCGTTGGAAGAGTCCAGCAGA
TATGCGCACTTCCACTCGCCGCCAATGAACCCTGCAGACTTCGAAGCGAA
GCCCATGGTGCTCATCGTGGGGCAGTACAGTGTCGGCAAGACGAGCTTCA
TCCGCTCCCTCCTTAAGAGAGACTTCCCGGGGCAGAGGGTTGGCCCGGAG
CCGACCACAGACAGGTAGGTGTAGACAGGATGTGTGACGTCGCGCCATGC
TTTCTTTTCCGACCTCTGCATGTGTTTTTCAGTGCCTGTGACTTGGTTCG
GTCTATGATTGGTCCAAGATTTTGCTTTCGGTGAAGTTTTTGTGAGAGGG
TGGCCTTCCAGTGGTGAAGGCAGCGTTACAAAGGGTGCAACAAAAGGTCT
GTGTCTTTGCAGCGTTGTGTATTTCGTTTTTCGGAGCCAAGCTCGACCAC
GAGGGCAATTATGTGCCCTTCGCCGATCACGGTTTGACGTATCACGGTTT
GACGTCATGCGGGCGTGTCGCCCAAGTGGTGCGCTCGTCGTGCCTCGTGT
GTTCTTTGTAATGGTTATCTGGTACTCGTCTCCTTTTTTTCGTGTCCCCT
ACATGTCTGTCCACCACGAATACTGTGTTCATCTCCGCCCGTTTTGTTTG
CGTCCTCGTGTATCCGACGACGGTCCTACACAATGTTCGCAGTTTGTCCC
GACCGTAACTTTTTGCCCTTGTCCGACGACAGCGCCAGGACGTTGGCCAC
ATGCATCATGGCTTGTATCCTACCGCCCGTATTTTTGTTACGTTGTGTCT
GACTTCGTTTCCCGCATGATGTGATGCTCGCGGCCTTTCGTGAACACTGT
AAAACACGGAAAATCACGCAGATTCGTAGCCGTGACCCACGGTGAGGACG
AGCGGGTGATGCCGGGGCACGCGCTCGCGATGCAGGCGGACAAGCCCTTC
CGAAGTTTGCAGCAGGTGATTTGTGACGTGATGTGACCCCCAAAGGGGAG
AGCGGCAGATTGCGGTTGGCGTTAGGGTAGTTGGTCTGGCTGGCTTGTGG
CTTGATCCTGTAGACCATGAGTCTGGAAAGACGACCAGCGCTTTTTGGTT
GGATTGCCGCCAGACCGTTTTTGCGGAGAGGTTGGCCTATCTCTTCGACC
TAGAGACGAGACTTTGTGTTAATGTAATATTGTCGAGGGGCTATGGCCGA
CCATCCTCCCCCTTCGGCGGAAATCTTTGTACAACTGCCATGTCATACAT
GTTGGCATCTCGTCATGTGCGTGTATCTTCGGAGCCGGAGTTCCTGATGA
TGGTGTGCTCACTCGTTCCACATACCGCCTTTCCGCGTCCCATGATAGCA
GTTGATCACTTCCTACTATCCTTGCACCCTCTTTCTCACGCCCATACCGC
CGGCCGCACATGACATGATGACCCGCCCTTCATCCCTTCTCGGTGTGGGC
TGGCTGTCGACGACGACAGTTCGGTAATAACTTCCTGACTAAGTTCGAGG
GCTCCGTGGTGGATGCTCCCATACTGCGGAACATTACCCTCGTCGACACC
CCCGGTGAGAGGGGGGGAGAGAAGAGCCAACGCGTGGTCGGAGTAGCTCA
GGCAACGAGGGACCTCTGCCTTAAGCCCCCCAGTAATTTTGATTCCCAGG
ACCGTGGCAAGTACTATGAACGCCTCCACCTCTTTTTCCTGTTGGATGCC
ATACACGGCAGAGTGGGAATGTGCAGCAATGTTGATTCACTTGGGGTTGG
GGATGTCTTTTGACCGAGTTGGTCAATGGCAAGAGGGGCTGAGGAGCTGT
GGATCGAGCACATTTCTCGTTTGTTGCGGATGGAACGCTGGGAAGTACTT
GCCACCCCCCCCTCCCCTTCCCGCTATGCCGCCGGTATTTATGGCCTTCA
CGCCCATTCCGTTAATTCCATGCCCTGTTTTTTGTTCGACCTGCGTGCGC
CTCCCCCCTGGCCGCAACTTGTTGTGGTTAGGTGTCCTCTCCGGAGAAAA
ACAACGTATCGGGCGGGACTACGACTTTGCCTCTGTGATCTCGTGGTTCG
CGGAAAGGTGAAACAGGCGACCGTGCTACCACGTATATTTTGGTGGAAAG
TTACTCAAGGTTGATGGGGGTCTCGGGCGCTGCACGAAAATGGTTTGTAT
CACCGCCGTGTTGCGAACGCGTGTCGCGGCAATGGACCGAGCCCGACGAC
AAATTCATTCATTACTCCAGCGCCGCTCTTGACGATGCCATGTCTTCGTT
GTGGCATCGAACTGTTGTGTTTTCAGAACGAACCGGCTGCTTTTGCTCTC
CATCTGCTCGCGACAAGCCCCCCACCCGTGCACTTGTCGCGTGAGTGTTT
CTCTGGACATATATAGCTCTTGGATGTAGACCGCGAGAATCGCCGCATTC
CCGAAACCGGCGTGACATTGATCTGTCATCGCCTCATCCGTTGTTGTCCA
TCTTTGTTGTTGGTTGTGTTTCCCACGACATGCTCCTCACAGGGCGGATT
TGATTGTAATCATGTTCGATGCGCACAAGCTGGACATATCCGACGAGCTC
AAGATGGTGATCGACACGCTCAAGCCCCATCACGACAAGATGAGGTAGGT
ACAAGGGCCGCACTGGAGACTCACGATCTATGGGTGCTGGTGTTCGCCGG
CGTGTTGAAAAATATTATTAAATATTGCCTCCAGTGCTTGGGCGTCGCTG
CAACGATGACGTCACCAGTGTGTCGTAGCCAATCGAGAAGGAGCAGTAGC
ATCGCCGCTGACGCTCGAAACGGTTTCGGGTATGGTGAATCCTTCTTTGG
AAGAATGAAGTCGCGCGGCTTTGTTCGTCTCGCCGACTGTTGCATTACGA
TCGGCGTGGAGATGCCTGACGCTTTCCCCCCACCCCCAAAACGTGCCTGT
CCTCTGATCGCACCTCGCCTGTTGTATCCATTGCCGGGACCGCAGAGTGC
TCCTGAACAAGGCCGACACGATAGACACCCAGCAACTCATGCGCGTGTAC
GGCGCCCTGATGTGGTCACTGGGGAAGGTCATGCAAACTCCCGAGGTGTG
CAGGGTGTACATCGGATCCTTCTGGGAGGCCCCGCTCAGCAATTTTGACA
ACAGATTTCTGCTCGAGGTATGTATGCGCGGTTTCGATGATTATGCCCTG
GAGCAGACCCTCGTAGTACGGTCCGAATATGTGACAGTCAGTAGGATTGG
TCGGTTCGCGTGATAAGGTGCTTGTTGGCTGTATCGCGTTTTTTGGAGGG
GCACTGGGACATGCGATGAGTTTCTCGTTGTGGTGGAACAAGTAGCAATC
AGTAGAATTGGTCGGTTCGTGTTGTTTGGTCCTTTTTGGCTGTATCAAAT
GTTTTGGAGGGGAAACGAGGCCACTCGGTAACCTTTATAAAGAGGACCGC
CTACGCAGGATTTGTAGAGTACTTGAAAAACGAATAGGGAGGGGGCACGC
AGACCCTATCCCTAACCCTAACCCTAACCCCAAAGCACGGATTGAATACT
TTATCCCATATGTTTGTTTAATCAATTTTGCTGCGTAGACTACTGTATAA
AAATGTGGTGGTCCACAAACTGGTACATGACTGGAACGACTGACCATAAT
TAAATTTGGAGAGCTGTCTCTGTTGAAGCTGCAGTAGTCGCCGTCAATCT
CGTCAGTGCACCCCTCCCCAGGGCTATTGCACTCACCCTGCATAATCTGT
GCTCGCGACTGTGCATCCCGTCTGGCAGAAAGAGAAAAACGACCTGCTGG
AGGAGCTCATGCTGCTCCCGGAGAACGCGGTCGTGCGGCGAATCAACGAG
CTCGTGAAGCGGGCGCGGAGCGTTAAGGTTCACGCGTACATCATCCACTA
CCTCCGGAAACAGATGCCGTACATGATGGGCAAGCAGGAGAAACAGGTTG
GCGGAGGATTTGTTTTGTTTGCCCTTTGTTTCCGGACGGGTTGGTGAGGT
GGTTGACGACTTCGGAGGAATGTTGCGGGGTGCCCCAGCCACCCCCCCCC
TCGTGATTGGATTTGTTCAGTGCCCGTCGCGTCGCGGTGGGGTGGGGTGG
AACGTTGCCACGTCGGGTTGTACGTCGTGGCGTGCCTTTCGGACTGCTTG
CCGTCTTGACGGTCCTGTCGAGAGGCGCGTGGAAAGAGCACGGCGATGGT
ACGGTACACCCGCCTTCCGTTTCTTTTCGTCCATTCCAAGAATACGATTG
CTGCTTAGCTGAAACCGTTACAGCGATTTGGCACCAAGTTTACGGGACGA
ACCGCTGCCCACCTGCCGTGCGGTCGTTTTTGGTGCATTCCACAGGAGAA
GCTGATCAGGCGGTTGGATCAGGAGTTCCTCGCCTGTGCAAGGCGCTATG
GGCTACCGTTGGGCGACTTCCCGAAAGTGAGACTTGTGGCCACGAATGCG
CCGCCAACACTGTACTTTGGACAATCCTTGCCGATGTGTGGTCTGCTTCA
TGCTTCATCAAGCAAGTAATGGACGGCGCCTACTTTTGTGAGCGTGCATG
GCAACGGTCCGCGCAAACATTGACCGTGTGTGTGTGGTCGGATACTTTTA
TGGTAAGTGTCCTAGTTCGCCTTTTGTCGGAACAGACACTCCGGTCATCA
CCGCCGTGAGCCTTTCCTTCAGGAGGTCTGCGAAGGATCAAAGGGTTCAT
TACGGATATCCGAAAGTCAATCCCTGTTGAGCGTGTGTACACCGCACTTT
GCCACCCTTGCTGTGTCAGGCCGAGGCACGCTGTAATTTTCTTGATGTGA
GCTGCATGCATTTTGTAGCAACGCCTGCGCGTTTTGACATTGTGTTTTCC
GGCTAGCTTTTGATAAAGGAGAGGTGAGCGATATCTTCCCGCCTTTCTCT
CTAATCGGGTTTTACACGTGTCGTTCATGAGCCTTAACCCGATAACACAT
GGACTCAAAACGGGATGACCCCAAATGAATTACCAGGTGGAAAAGTTCCG
CCGGTCTTTGAGGGAGATCAAGGATATCTCCAAATTCAAGAGCCTAGACA
AGAGCTTGGTGCACGAGATGGACAAGGTGTTTTCTGGCGACATCCCCAAG
CTCATGGAGAAGGCGGCAAGACCAGGCAACAGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig711:15894..22329-

>mRNA_Ecto-sp13_S_contig711.18205.1 ID=mRNA_Ecto-sp13_S_contig711.18205.1|Name=mRNA_Ecto-sp13_S_contig711.18205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:15894..22329- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCGCAGTCCCCGCCCTCCGCGATGTTCCAACAGCGGCAGGTGGA
GCCAGCGGCGACCGGCAATGGCATGGCCGGCGGGGCGGGATCGACCGCGC
GGCTTGGAGGAGGCGGCGGCGGTGGCGGCGGCGGCGATGGCGGCGGCGGC
AGGCAGTGGGAACCTCCGTCGGCTGCTAGTGCCGGGGCTGTCACGCCCGA
GGTGAAGCTCAGGCAGTATCGCAGTGCTGGTGGTGGTGGGGGTGGCGGGG
AGGTCGAGGGCAACCAGGAACAAGATAAAATAGCTCGGGCGCTGCTTTCG
AACACTGACAAAGAGGTCATCTTCGACGGGCTCAAGAAGCTCTACAGAAA
AAAGATTCTCCCGTTGGAAGAGTCCAGCAGATATGCGCACTTCCACTCGC
CGCCAATGAACCCTGCAGACTTCGAAGCGAAGCCCATGGTGCTCATCGTG
GGGCAGTACAGTGTCGGCAAGACGAGCTTCATCCGCTCCCTCCTTAAGAG
AGACTTCCCGGGGCAGAGGGTTGGCCCGGAGCCGACCACAGACAGATTCG
TAGCCGTGACCCACGGTGAGGACGAGCGGGTGATGCCGGGGCACGCGCTC
GCGATGCAGGCGGACAAGCCCTTCCGAAGTTTGCAGCAGTTCGGTAATAA
CTTCCTGACTAAGTTCGAGGGCTCCGTGGTGGATGCTCCCATACTGCGGA
ACATTACCCTCGTCGACACCCCCGGTGTCCTCTCCGGAGAAAAACAACGT
ATCGGGCGGGACTACGACTTTGCCTCTGTGATCTCGTGGTTCGCGGAAAG
GGCGGATTTGATTGTAATCATGTTCGATGCGCACAAGCTGGACATATCCG
ACGAGCTCAAGATGGTGATCGACACGCTCAAGCCCCATCACGACAAGATG
AGAGTGCTCCTGAACAAGGCCGACACGATAGACACCCAGCAACTCATGCG
CGTGTACGGCGCCCTGATGTGGTCACTGGGGAAGGTCATGCAAACTCCCG
AGGTGTGCAGGGTGTACATCGGATCCTTCTGGGAGGCCCCGCTCAGCAAT
TTTGACAACAGATTTCTGCTCGAGAAAGAGAAAAACGACCTGCTGGAGGA
GCTCATGCTGCTCCCGGAGAACGCGGTCGTGCGGCGAATCAACGAGCTCG
TGAAGCGGGCGCGGAGCGTTAAGGTTCACGCGTACATCATCCACTACCTC
CGGAAACAGATGCCGTACATGATGGGCAAGCAGGAGAAACAGGAGAAGCT
GATCAGGCGGTTGGATCAGGAGTTCCTCGCCTGTGCAAGGCGCTATGGGC
TACCGTTGGGCGACTTCCCGAAAGTGGAAAAGTTCCGCCGGTCTTTGAGG
GAGATCAAGGATATCTCCAAATTCAAGAGCCTAGACAAGAGCTTGGTGCA
CGAGATGGACAAGGTGTTTTCTGGCGACATCCCCAAGCTCATGGAGAAGG
CGGCAAGACCAGGCAACAGATAG
back to top