mRNA_Ecto-sp13_S_contig711.18204.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig711.18204.1
Unique NamemRNA_Ecto-sp13_S_contig711.18204.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig711.18204.1 vs. uniprot
Match: A0A6H5KYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC3_9PHAE)

HSP 1 Score: 684 bits (1764), Expect = 1.410e-244
Identity = 354/384 (92.19%), Postives = 367/384 (95.57%), Query Frame = 2 
Query:   92 MATPPRRDVEEEQQQTWSGSKVRGGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGEGDSQRALGSVLHLLDRLQLFEPDQQTGGDVSLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSLSPPLPTAQSRSPGNAFIIPPSPQHASAAVGVRSTSASHTTAPEGRQQRVHHVGAKEGDVDGSTGSPRHSSREGAEVAASSQGRLCDIGSGLQAGLPATGGMKDGDRAGAVVSEIPEETARAMAAEEDRAGGVTTMAVGPAEYLQWLGDLSSMLVHEQWRKEELLSRIAFGPEAASARLRAHVQANWSSRSAHSFLDQPSIDAATTAAQVVPPLRSR 1243
            MATP RRDVEEEQQQTWSGSKVR GGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWR+GEGDSQRALGS  HL+DRLQLFEPDQQTGGD++LGGLEKLPGCRELLI KHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPS SP LPTAQSRSPGNAF +PPSPQHASAAVGVRSTS SH TAP+GRQQRV HVGAKEGDVDGSTG+P+HSSREGAEVAASSQGRL DIG+GLQAGLPATGGMKDGDRAGAVVSEIPEET RAMA  EDRAGGVTT+ VGPAEYLQWLGDLSSMLVHEQWRKEELL R+AFGPEAASARLRAHVQA+WSSRSAHSFLDQPSIDAATTAAQVVPPL+SR
Sbjct:    1 MATPSRRDVEEEQQQTWSGSKVRVGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWRKGEGDSQRALGSAFHLIDRLQLFEPDQQTGGDINLGGLEKLPGCRELLIHKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSPSPTLPTAQSRSPGNAFTMPPSPQHASAAVGVRSTSVSHATAPKGRQQRVDHVGAKEGDVDGSTGNPQHSSREGAEVAASSQGRLGDIGNGLQAGLPATGGMKDGDRAGAVVSEIPEETTRAMATGEDRAGGVTTVVVGPAEYLQWLGDLSSMLVHEQWRKEELLLRVAFGPEAASARLRAHVQAHWSSRSAHSFLDQPSIDAATTAAQVVPPLKSR 384
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BLAST of mRNA_Ecto-sp13_S_contig711.18204.1 vs. uniprot
Match: D7FPK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK5_ECTSI)

HSP 1 Score: 584 bits (1506), Expect = 4.070e-206
Identity = 304/329 (92.40%), Postives = 310/329 (94.22%), Query Frame = 2 
Query:   92 MATPPRRDVEEEQQQTWSGSKVRGGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGEGDSQRALGSVLHLLDRLQLFEPDQQTGGDVSLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSLSPPLPTAQSRSPGNAFIIPPSPQHASAAVGVRSTSASHTTAPEGRQQRVHHVGAKEGDVDGSTGSPRHSSREGAEVAASSQGRLCDIGSGLQAGLPATGGMKDGDRAGAVVSEIPEETARAMAAEEDRAGGVTTMAVGPAEYLQWLGDLSSMLVHEQWRKE 1078
            MATP RRDVEEEQQQTWSGSKVRGGGVL RQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGE DSQRALGSV HLLDRLQLFEPDQQTGGDV+LGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAE WQLHRSDPARAL QPRHP PPS SPPLPTA SRSPGNAF IPPSPQHA AAVGVRSTSASHTTAPEGR QRVHHVGAKEGD+DGSTG+PRHSS EGAEVAAS QGRL DIG+GLQAGLPATGGMK+GDRAGAVVSEIP ETARAMAA  DRAGGVTTM VGPAE+LQWLGDLSSMLVHEQWRKE
Sbjct:    1 MATPSRRDVEEEQQQTWSGSKVRGGGVLGRQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGENDSQRALGSVFHLLDRLQLFEPDQQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEGWQLHRSDPARALLQPRHPAPPSPSPPLPTALSRSPGNAFTIPPSPQHAGAAVGVRSTSASHTTAPEGRLQRVHHVGAKEGDIDGSTGNPRHSSLEGAEVAASPQGRLGDIGNGLQAGLPATGGMKEGDRAGAVVSEIPGETARAMAAGGDRAGGVTTMTVGPAEHLQWLGDLSSMLVHEQWRKE 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig711.18204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYC3_9PHAE1.410e-24492.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPK5_ECTSI4.070e-20692.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig711contigEcto-sp13_S_contig711:11856..15252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1605
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000930.1
Cds size1155
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig711.18204.1prot_Ecto-sp13_S_contig711.18204.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig711 11947..14893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.8518167-UTR-Ecto-sp13_S_contig711:11855..119461681463975.8518167-UTR-Ecto-sp13_S_contig711:11855..11946Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig711 11856..11946 +
1681463975.9411287-UTR-Ecto-sp13_S_contig711:14893..152521681463975.9411287-UTR-Ecto-sp13_S_contig711:14893..15252Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig711 14894..15252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.8693864-CDS-Ecto-sp13_S_contig711:11946..121141681463975.8693864-CDS-Ecto-sp13_S_contig711:11946..12114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 11947..12114 +
1681463975.87978-CDS-Ecto-sp13_S_contig711:12933..130351681463975.87978-CDS-Ecto-sp13_S_contig711:12933..13035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 12934..13035 +
1681463975.9035325-CDS-Ecto-sp13_S_contig711:13337..134691681463975.9035325-CDS-Ecto-sp13_S_contig711:13337..13469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 13338..13469 +
1681463975.9128938-CDS-Ecto-sp13_S_contig711:13808..143931681463975.9128938-CDS-Ecto-sp13_S_contig711:13808..14393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 13809..14393 +
1681463975.9308102-CDS-Ecto-sp13_S_contig711:14725..148931681463975.9308102-CDS-Ecto-sp13_S_contig711:14725..14893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 14726..14893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig711.18204.1

>prot_Ecto-sp13_S_contig711.18204.1 ID=prot_Ecto-sp13_S_contig711.18204.1|Name=mRNA_Ecto-sp13_S_contig711.18204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=385bp
MATPPRRDVEEEQQQTWSGSKVRGGGVLARQPSPSPAKARQAQRRYRSLY
HQAAKEYWAWREGEGDSQRALGSVLHLLDRLQLFEPDQQTGGDVSLGGLE
KLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHR
SDPARALRQPRHPPPPSLSPPLPTAQSRSPGNAFIIPPSPQHASAAVGVR
STSASHTTAPEGRQQRVHHVGAKEGDVDGSTGSPRHSSREGAEVAASSQG
RLCDIGSGLQAGLPATGGMKDGDRAGAVVSEIPEETARAMAAEEDRAGGV
TTMAVGPAEYLQWLGDLSSMLVHEQWRKEELLSRIAFGPEAASARLRAHV
QANWSSRSAHSFLDQPSIDAATTAAQVVPPLRSR*
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mRNA from alignment at Ecto-sp13_S_contig711:11856..15252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig711.18204.1 ID=mRNA_Ecto-sp13_S_contig711.18204.1|Name=mRNA_Ecto-sp13_S_contig711.18204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:11856..15252+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTTCCCAATCCCAAGTCCCCGTGGCTCCAGCAGTTACAGCAGTGTTCGC
CGCTCTCTCACTCTGTTGTCGGTCGCTCCTCTCTGTCGTCAATGGCAACC
CCTCCTCGACGAGACGTAGAAGAGGAGCAGCAGCAAACCTGGTCAGGGTC
TAAGGTTCGAGGGGGAGGGGTTTTGGCGAGGCAACCGAGTCCGAGCCCGG
CCAAGGCTAGGCAAGCGCAGCGTCGGTACCGCTCCTTGTACCACCAAGCC
GCCAAAGAGGTGGAGTACAACATACAATAGCAGCGGGTAGCCTGTAGTTT
AATACGACACGACTCTGTAGTGCAGTTGCCTTTGTCTCTCTTTGTTAAGC
CGTCTTTGCTAAGCCGCCATCAAGCCTTGTGGGTTGAGCTGTGCTTGCTT
GCTTTTATTCACATCTTTTTGTAGGCATGTATGTAAAACCCAGCAGATCT
ACTCATCAACGGCCGAGGGCCTCACGGGTGTGACGAAAGATGAGATGCAG
GTCTAGAAATCTGCTTGGCGTATGAAATGATAAAGTGTTTTGACCCGCGA
CGGCTTGGATCCTTAGCTCGCCCTCCCATAAGGTTTGACCCACACATTCA
AGAGAGCACATCCCTGGGCCGAGCAGGCGGTTCCTTGCCAAGTGTAATAT
TGCTTGAAGCAAGCACCAGCTTACAAGTAATGAACGCGTCACGAGTGCAA
GATGCTTGTGCACACCAATGGGTCATGGGTTCGTGCTTGTTTTGTGTTTC
GGTCGGGTTGTGCGGAATCATATCGTCAGCAGTTGGGTAAGCCCCGAAGG
AGGATCCGCGTTTCAATGAATCGCGAAAGGACCAAGACGAAAACACGCAG
GGTACCGCCGTAGCCGCTTGGTTGACGCACAGGATGCGTCTGACACGAAG
GCTTGGCCTTTCTGATGACAGTTTCCTTGTCCGGACTACACGCATAAGAG
AGCGAATCCACTGGTCTCGTGGCGGTAGGCCGTTCGTCACGGCTTGCAAA
GCTGGCTAGTAACTTAAGTCGCCTTGACACATGATACCCCCAAAACATTT
TGTGTACGTGCGTGCAACGCGTCTGCAGTACTGGGCATGGCGAGAAGGAG
AGGGTGACTCGCAGCGAGCTCTTGGATCAGTGTTACACCTCCTTGATCGC
CTCCAGCTGTTCGAGCCGGACCAACAAACGGTATTTGTTTTGGTCTGCAC
TATTTTCGCTCAGGACGGATGAACTTGAGTAGACGGTGGTTCCGTGGGGT
ATGCGGAAAAAAGGGAAAGTTCAACCCTTCTTCGAGGTGGTGATGTTTTC
GAGGGGACGACGCACCACATAATCATGAGGGTCGATGGCCAATCGAGCCC
AAAATGCTTTCAACGACCGAGGGTGTCCTCCCTCCTGGCACCGAGTGCGG
CGATTCATTCACACCGATCATTGGAGCGTTTGAGGACTTTCAGGATCGTG
ACGCCCGCTACTGCTGTACCTTGCTGCCGCAGGGTGGGGATGTCAGTCTC
GGTGGATTGGAGAAATTGCCGGGTTGTCGGGAGCTCCTGATTCTCAAGCA
CACCACCGAGCTGGAACGAGTGATGCGCCTCTGGCGCGCCCTTGTGCGGC
AGATGAGAGGACAGGTGCCACCGCAATGTCCACGCTCTTGATTGAGATCA
GGAGTAATGTTTGCACTCAGCACGTGGTATGGGCGGGATACACGTTTGAG
CACCGGTTGGTCGCTAGCTTTTCGAGGACTCCTTTCGCCAGCTTGTGGCA
ATATCTGGCGTACGCATCTGCGGACTACGAACCTTTTGCGACATGGCCCA
TGATTTTTTTTAGGAAAAGTTGAAGCTTGTTGTTTGTAGATGCAAGGCAC
GCGTTCCTCATTTGTCATTGACGATCACCATCCCCGTCGCACGATTGATT
TTTTCGTGGGTGGTACGCACCCGCACCGACGTGTCTTGATCGACGGGCGG
CAGGTATCTCGTGTTGAAGAACTTCTCGCCGAAGCCTGGCAGCTACATCG
CTCCGACCCGGCTCGAGCGCTTCGGCAACCCCGCCACCCTCCGCCGCCCT
CGCTGTCCCCACCGCTACCGACGGCTCAATCGCGATCCCCCGGGAACGCC
TTCATCATTCCCCCTTCCCCGCAGCATGCTAGCGCTGCTGTCGGGGTGCG
GTCGACTTCTGCAAGCCACACCACCGCTCCGGAAGGGCGTCAGCAGCGCG
TTCATCACGTCGGTGCAAAGGAGGGCGACGTTGATGGCAGCACGGGCAGT
CCTCGACATTCCTCCCGAGAAGGTGCAGAAGTCGCTGCGTCGTCTCAGGG
GCGGCTGTGTGATATCGGAAGCGGGCTGCAGGCAGGTTTGCCAGCGACGG
GCGGGATGAAGGACGGTGATCGAGCGGGAGCGGTGGTCTCAGAGATTCCC
GAGGAAACCGCAAGAGCGATGGCGGCTGAAGAAGATAGGGCGGGGGGGGT
GACGACCATGGCCGTGGGGCCTGCGGAGTACCTACAATGGCTAGGAGATT
TGTCCAGCATGTTGGTGCATGAACAGTGGCGAAAGGAGGTACGGAGCGTA
CCGGCACCCCAAGTAGCGACCTCTCGTTGATCCCTCGACGGACAGTTGTC
TTCCAGTCTCTGAGTTTTCTAGTACAAAGATTCCTGGGTAATGCTTGACC
ATCAAATTTATCGATTCCCCGCGGTATATATGACGATGATGCCTCGCAGA
ATGCTGTTGCGGTAGGGACTAGGCATAAATTGGCTCGAGCCACGTGCTGT
TCTTCGTCCGCCTGGTACTCATATTCCGTCAATAAATGCGCTCTTCCCAA
TCGCCCTCTCCTAAAACGTCGCAAACTCGCCTTTTAAACTCCCCTCTGGT
CATGTCGGCTCACGTTGTAGGAACTTTTATCACGAATTGCGTTTGGGCCA
GAGGCAGCATCAGCGCGGCTCAGGGCCCACGTGCAAGCGAACTGGTCGTC
GCGATCGGCGCACAGTTTTCTTGACCAGCCGTCGATCGACGCGGCCACCA
CCGCAGCGCAGGTCGTACCACCTCTCAGGAGCCGTTAGCGCTATGCAAGA
CGGCGCGTGTTCGCAAGATTGGCCTAAGATAGGTGGCGGTTGAGCGTGCA
CAGGCACACGGAACGCGGTGGTACCGCTGTGACTGACATGATTGTCTTCG
ATCAACTACGCGGCAGAACATGGGGGAATGGAAACAGGATAGGTTTCTTT
CCACGCGACGCTGTGCTTCTACCATAGCGCTGCCTGCCTAAGAATTATTG
CATTTCGTCGTGATTGAATCTTACACCGCTGGGCAAACACGCCGTGAAGG
CAAAGCTGTTTTCCCGCCACTCCTTTCGGACGTGTTGGTCGGCTGTTGCA
GAATCCCGTTTGTATATCGCCTCGTAAACTTATTTTACATTTTAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig711:11856..15252+

>mRNA_Ecto-sp13_S_contig711.18204.1 ID=mRNA_Ecto-sp13_S_contig711.18204.1|Name=mRNA_Ecto-sp13_S_contig711.18204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:11856..15252+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACCCCTCCTCGACGAGACGTAGAAGAGGAGCAGCAGCAAACCTG
GTCAGGGTCTAAGGTTCGAGGGGGAGGGGTTTTGGCGAGGCAACCGAGTC
CGAGCCCGGCCAAGGCTAGGCAAGCGCAGCGTCGGTACCGCTCCTTGTAC
CACCAAGCCGCCAAAGAGTACTGGGCATGGCGAGAAGGAGAGGGTGACTC
GCAGCGAGCTCTTGGATCAGTGTTACACCTCCTTGATCGCCTCCAGCTGT
TCGAGCCGGACCAACAAACGGGTGGGGATGTCAGTCTCGGTGGATTGGAG
AAATTGCCGGGTTGTCGGGAGCTCCTGATTCTCAAGCACACCACCGAGCT
GGAACGAGTGATGCGCCTCTGGCGCGCCCTTGTGCGGCAGATGAGAGGAC
AGGTATCTCGTGTTGAAGAACTTCTCGCCGAAGCCTGGCAGCTACATCGC
TCCGACCCGGCTCGAGCGCTTCGGCAACCCCGCCACCCTCCGCCGCCCTC
GCTGTCCCCACCGCTACCGACGGCTCAATCGCGATCCCCCGGGAACGCCT
TCATCATTCCCCCTTCCCCGCAGCATGCTAGCGCTGCTGTCGGGGTGCGG
TCGACTTCTGCAAGCCACACCACCGCTCCGGAAGGGCGTCAGCAGCGCGT
TCATCACGTCGGTGCAAAGGAGGGCGACGTTGATGGCAGCACGGGCAGTC
CTCGACATTCCTCCCGAGAAGGTGCAGAAGTCGCTGCGTCGTCTCAGGGG
CGGCTGTGTGATATCGGAAGCGGGCTGCAGGCAGGTTTGCCAGCGACGGG
CGGGATGAAGGACGGTGATCGAGCGGGAGCGGTGGTCTCAGAGATTCCCG
AGGAAACCGCAAGAGCGATGGCGGCTGAAGAAGATAGGGCGGGGGGGGTG
ACGACCATGGCCGTGGGGCCTGCGGAGTACCTACAATGGCTAGGAGATTT
GTCCAGCATGTTGGTGCATGAACAGTGGCGAAAGGAGGAACTTTTATCAC
GAATTGCGTTTGGGCCAGAGGCAGCATCAGCGCGGCTCAGGGCCCACGTG
CAAGCGAACTGGTCGTCGCGATCGGCGCACAGTTTTCTTGACCAGCCGTC
GATCGACGCGGCCACCACCGCAGCGCAGGTCGTACCACCTCTCAGGAGCC
GTTAG
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