prot_Ecto-sp13_S_contig711.18203.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig711.18203.1
Unique Name	prot_Ecto-sp13_S_contig711.18203.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	403

Homology

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 481 bits (1239), Expect = 1.250e-166
Identity = 315/402 (78.36%), Postives = 318/402 (79.10%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSIDESDGAEGTLGESTAAKKXXXXXXXXXXXXXXXXXXXKKMDKESSAGGDGSDXXXXXXXXXXXXXDKKKEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGXXXXXXXXXXXXXXXXXXXGGXXXXXXXGREGMNSMGGMDRRR 402
            MNVIQEI+RINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGS D+SDGA GTLGES     XXXXXXXXXXXXXXXXXXX               XXXXXXXXX    D   E+KX                                        PPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAG   XXXXXXXXX      X  XXXXXXX    MNSMGGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.830e-68
Identity = 114/184 (61.96%), Postives = 141/184 (76.63%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKA-SWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARG-EAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGS-GSIDESD 181
            MNVIQEI+RINE EL +GV+G A SWH +Y+DSA+VF GG PYDL EGD+LCV SQWGE+EDINL R++ TGKSKGF FIKYE+Q+ST+LAVDNFNG++LLGR IRVDH  KY LP+ +REK E E+E     G E   E+  ++RPG AYEG +LA   N HKGVD++  P+    GS ++SD
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPDDSDDGSGEDSD 185

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 228 bits (581), Expect = 2.080e-67
Identity = 108/174 (62.07%), Postives = 140/174 (80.46%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSG-KASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQG 173
            MNV++EI+R+NE+EL++G +G + SWH +YKDSAWVF G  P  L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+Q+STILAVDN NGI LL RT+RVDHK KY+LP EV EKAE++++ R+  GE     GP+W+PG AYEGK+L   H+  KGVD+FA  ++G
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG 174

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 220 bits (560), Expect = 3.540e-67
Identity = 106/173 (61.27%), Postives = 135/173 (78.03%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQ-----WRPGVAYEGKQLATSHNFHKGVDVFA 168
            MNV++EI++INEREL++G++G ASWHH+YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+Q+STILAVDN NG  LLGR +RVDH  KY LP E+++K   ED ++   GE   E G       W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDK---EDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 210 bits (534), Expect = 5.200e-62
Identity = 105/167 (62.87%), Postives = 126/167 (75.45%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGV  + SWHH Y+DSAWV+ GG  Y+LTEGDILCV SQ GEIEDINL R+KD+GKS GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K +  DE      E       + RPG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDEPVDENDEM------RGRPGHAYEGKELANKYDIHEGVDVF 161

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 7.120e-62
Identity = 107/167 (64.07%), Postives = 129/167 (77.25%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGVS + SWHH Y++SAWV+ G   Y+LTEGDILCV SQ GEIEDINL R+KDTGKS GFCFIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K   ED+E V   +A      + +PG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDK---EDDEGVLDDDAEL----RGQPGHAYEGKELANKYDIHQGVDVF 160

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.430e-61
Identity = 107/167 (64.07%), Postives = 124/167 (74.25%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGVS + SWHH Y+DSAWV+ GG  YDLTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE V        +G   +PG AYEGK+L    + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 207 bits (528), Expect = 7.380e-60
Identity = 108/169 (63.91%), Postives = 127/169 (75.15%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKE--DEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGV  + SWHH Y+DSAWV+ GG  Y+LTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K E E  D+E + RG          +PG AYEGK+LA   + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDKEENEVADDEEL-RG----------KPGHAYEGKELANKFDIHQGVDVF 158

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 202 bits (515), Expect = 3.350e-59
Identity = 101/173 (58.38%), Postives = 132/173 (76.30%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGK-ASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQ 172
            MNVIQEI+RIN+RELE G++G  ASWH +YK+SAWV+ G  PY LTEGDILC MSQWGEIEDIN  R+KDTGK KGF F+KYE+Q+ST+LAVDNFNGI+L+ RT+RVDH  KY LP EV++K ++ +E+    G+   +   ++ PG AY+  +LA+ ++  KG D+F   EQ
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQ-HDSSSKFGPGHAYKDMELASKYDIAKGQDLFQTEEQ 172

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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: W2N0T6_PHYPR (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N0T6_PHYPR)

HSP 1 Score: 201 bits (511), Expect = 1.240e-58
Identity = 102/173 (58.96%), Postives = 128/173 (73.99%), Query Frame = 0

Query:    1 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDE-ERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQ 172
            MNV+ EI+R+NERELE  V    SWH +Y +SAWVF GG P++L+EGD+LCV+SQ+GEIEDI+L R+  TGKSKGF FIK+E+Q+STILAVDN NG  LL R +RVDH  KY LP E++E ++ EDE +R  RG           PG AYEGK+LA+  + HKGVDVFA PE+
Sbjct:    1 MNVVAEIQRLNERELELNVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEGDRKQRG----------LPGHAYEGKELASDFDLHKGVDVFAAPEE 163

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPK4_ECTSI	1.250e-166	78.36	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S2RL84_9STRA	3.830e-68	61.96	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A4D9D1V2_9STRA	2.080e-67	62.07	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A835YJH4_9STRA	3.540e-67	61.27	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A485KUA3_9STRA	5.200e-62	62.87	Aste57867_11943 protein n=1 Tax=Aphanomyces stella...	[more]
A0A6G0X0J2_9STRA	7.120e-62	64.07	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
W4H400_9STRA	5.430e-61	64.07	RRM domain-containing protein n=3 Tax=Aphanomyces ...	[more]
A0A024UQN5_9STRA	7.380e-60	63.91	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A7S3YEY6_HETAK	3.350e-59	58.38	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
W2N0T6_PHYPR	1.240e-58	58.96	RRM domain-containing protein n=11 Tax=Phytophthor...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..217
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..288
None	No IPR available	PANTHER	PTHR45880	FAMILY NOT NAMED	coord: 1..288
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 34..107 e-value: 2.0E-19 score: 80.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 35..105 e-value: 6.1E-16 score: 58.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 33..111 score: 15.392
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 23..135 e-value: 2.8E-23 score: 84.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig711	contig	Ecto-sp13_S_contig711:8471..11488 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig711.18203.1	mRNA_Ecto-sp13_S_contig711.18203.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig711 8471..11666 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig711.18203.1 ID=prot_Ecto-sp13_S_contig711.18203.1|Name=mRNA_Ecto-sp13_S_contig711.18203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp
MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDIL
CVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLL
GRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYE
GKQLATSHNFHKGVDVFAKPEQGSGSIDESDGAEGTLGESTAAKKERREA
KRKRKEARADARERKKMDKESSAGGDGSDGHHKKKKSKHHKKDKKKEDKK
EGRAHGKDEKNRSSEHPRAGNGGRGEERVGGRHDHRRDKEPPTGRSSGAD
ASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDW
RGLGGRAAGGRGGGAGGGRGGREGGGRGGGGRQSGGRGREGMNSMGGMDR
RR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf