mRNA_Ecto-sp13_S_contig711.18203.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig711.18203.1
Unique NamemRNA_Ecto-sp13_S_contig711.18203.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 481 bits (1239), Expect = 1.110e-165
Identity = 315/402 (78.36%), Postives = 318/402 (79.10%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSIDESDGAEGTLGESTAAKKXXXXXXXXXXXXXXXXXXXKKMDKESSAGGDGSDXXXXXXXXXXXXXDKKKEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGXXXXXXXXXXXXXXXXXXXGGXXXXXXXGREGMNSMGGMDRRR 1384
            MNVIQEI+RINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGS D+SDGA GTLGES     XXXXXXXXXXXXXXXXXXX               XXXXXXXXX    D   E+KX                                        PPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAG   XXXXXXXXX      X  XXXXXXX    MNSMGGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.010e-67
Identity = 114/184 (61.96%), Postives = 141/184 (76.63%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKA-SWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARG-EAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGS-GSIDESD 721
            MNVIQEI+RINE EL +GV+G A SWH +Y+DSA+VF GG PYDL EGD+LCV SQWGE+EDINL R++ TGKSKGF FIKYE+Q+ST+LAVDNFNG++LLGR IRVDH  KY LP+ +REK E E+E     G E   E+  ++RPG AYEG +LA   N HKGVD++  P+    GS ++SD
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPDDSDDGSGEDSD 185
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.120e-66
Identity = 108/174 (62.07%), Postives = 140/174 (80.46%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSG-KASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQG 697
            MNV++EI+R+NE+EL++G +G + SWH +YKDSAWVF G  P  L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+Q+STILAVDN NGI LL RT+RVDHK KY+LP EV EKAE++++ R+  GE     GP+W+PG AYEGK+L   H+  KGVD+FA  ++G
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG 174
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.840e-66
Identity = 106/173 (61.27%), Postives = 135/173 (78.03%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQ-----WRPGVAYEGKQLATSHNFHKGVDVFA 682
            MNV++EI++INEREL++G++G ASWHH+YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+Q+STILAVDN NG  LLGR +RVDH  KY LP E+++K   ED ++   GE   E G       W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDK---EDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.570e-61
Identity = 105/167 (62.87%), Postives = 126/167 (75.45%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 679
            MNVI+EI+R+NE+ELEQGV  + SWHH Y+DSAWV+ GG  Y+LTEGDILCV SQ GEIEDINL R+KD+GKS GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K +  DE      E       + RPG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDEPVDENDEM------RGRPGHAYEGKELANKYDIHEGVDVF 161
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.510e-61
Identity = 107/167 (64.07%), Postives = 129/167 (77.25%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 679
            MNVI+EI+R+NE+ELEQGVS + SWHH Y++SAWV+ G   Y+LTEGDILCV SQ GEIEDINL R+KDTGKS GFCFIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K   ED+E V   +A      + +PG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDK---EDDEGVLDDDAEL----RGQPGHAYEGKELANKYDIHQGVDVF 160
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 207 bits (527), Expect = 2.650e-60
Identity = 107/167 (64.07%), Postives = 124/167 (74.25%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 679
            MNVI+EI+R+NE+ELEQGVS + SWHH Y+DSAWV+ GG  YDLTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE V        +G   +PG AYEGK+L    + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.610e-59
Identity = 108/169 (63.91%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKE--DEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 679
            MNVI+EI+R+NE+ELEQGV  + SWHH Y+DSAWV+ GG  Y+LTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K E E  D+E + RG          +PG AYEGK+LA   + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDKEENEVADDEEL-RG----------KPGHAYEGKELANKFDIHQGVDVF 158
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 202 bits (515), Expect = 1.590e-58
Identity = 101/173 (58.38%), Postives = 132/173 (76.30%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGK-ASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQ 694
            MNVIQEI+RIN+RELE G++G  ASWH +YK+SAWV+ G  PY LTEGDILC MSQWGEIEDIN  R+KDTGK KGF F+KYE+Q+ST+LAVDNFNGI+L+ RT+RVDH  KY LP EV++K ++ +E+    G+   +   ++ PG AY+  +LA+ ++  KG D+F   EQ
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQ-HDSSSKFGPGHAYKDMELASKYDIAKGQDLFQTEEQ 172
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BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Match: W2N0T6_PHYPR (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N0T6_PHYPR)

HSP 1 Score: 201 bits (511), Expect = 5.880e-58
Identity = 102/173 (58.96%), Postives = 128/173 (73.99%), Query Frame = 2 
Query:  179 MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDE-ERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQ 694
            MNV+ EI+R+NERELE  V    SWH +Y +SAWVF GG P++L+EGD+LCV+SQ+GEIEDI+L R+  TGKSKGF FIK+E+Q+STILAVDN NG  LL R +RVDH  KY LP E++E ++ EDE +R  RG           PG AYEGK+LA+  + HKGVDVFA PE+
Sbjct:    1 MNVVAEIQRLNERELELNVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEGDRKQRG----------LPGHAYEGKELASDFDLHKGVDVFAAPEE 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig711.18203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI1.110e-16578.36RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2RL84_9STRA2.010e-6761.96Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9D1V2_9STRA1.120e-6662.07RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A835YJH4_9STRA1.840e-6661.27RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A485KUA3_9STRA2.570e-6162.87Aste57867_11943 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X0J2_9STRA3.510e-6164.07RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4H400_9STRA2.650e-6064.07RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A024UQN5_9STRA3.610e-5963.91Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S3YEY6_HETAK1.590e-5858.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W2N0T6_PHYPR5.880e-5858.96RRM domain-containing protein n=11 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig711contigEcto-sp13_S_contig711:8471..11666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score489.6
Seed ortholog evalue1.4e-135
Seed eggNOG ortholog2880.D7FPK4
Preferred nameRBMX2
Model size1387
KEGG koko:K07919,ko:K13107,ko:K14807
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons4
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGsKOG0126@1,KOG0126@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_000920.1
EC3.6.4.13
Cds size1209
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.7583268-CDS-Ecto-sp13_S_contig711:8470..91631681463975.7583268-CDS-Ecto-sp13_S_contig711:8470..9163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 8471..9163 -
1681463975.775005-CDS-Ecto-sp13_S_contig711:9994..101591681463975.775005-CDS-Ecto-sp13_S_contig711:9994..10159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 9995..10159 -
1681463975.785158-CDS-Ecto-sp13_S_contig711:10467..105961681463975.785158-CDS-Ecto-sp13_S_contig711:10467..10596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 10468..10596 -
1681463975.795572-CDS-Ecto-sp13_S_contig711:11266..114881681463975.795572-CDS-Ecto-sp13_S_contig711:11266..11488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 11267..11488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.8062837-UTR-Ecto-sp13_S_contig711:11488..116661681463975.8062837-UTR-Ecto-sp13_S_contig711:11488..11666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig711 11489..11666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig711.18203.1prot_Ecto-sp13_S_contig711.18203.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig711 8471..11488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig711.18203.1

>prot_Ecto-sp13_S_contig711.18203.1 ID=prot_Ecto-sp13_S_contig711.18203.1|Name=mRNA_Ecto-sp13_S_contig711.18203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp
MNVIQEIRRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDIL
CVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLL
GRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYE
GKQLATSHNFHKGVDVFAKPEQGSGSIDESDGAEGTLGESTAAKKERREA
KRKRKEARADARERKKMDKESSAGGDGSDGHHKKKKSKHHKKDKKKEDKK
EGRAHGKDEKNRSSEHPRAGNGGRGEERVGGRHDHRRDKEPPTGRSSGAD
ASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDW
RGLGGRAAGGRGGGAGGGRGGREGGGRGGGGRQSGGRGREGMNSMGGMDR
RR*
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mRNA from alignment at Ecto-sp13_S_contig711:8471..11666-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig711.18203.1 ID=mRNA_Ecto-sp13_S_contig711.18203.1|Name=mRNA_Ecto-sp13_S_contig711.18203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3196bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:8471..11666- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGGAGCCACGGGGACTTGGGATTGGGAACGGACGCGGCTGTGAGGC
GGGACTGTTCAGACTGCGATCGCTGATTGGCCGCCAGGACGGGGTTGGGC
TCTCCTGTTCTCCCGTTCTCCCCACCTGCGACTCTCCCGCGTGCAGTTCG
AGCACACATTGCAACCCGTAGCAGAGCCATGAACGTGATCCAGGAGATTA
GGCGCATCAACGAGCGGGAGCTCGAGCAAGGGGTGTCCGGCAAGGCCTCA
TGGCACCACGAGTACAAGGACAGTGCGTGGGTCTTCGCCGGAGGCTTTCC
GTACGACCTCACCGAGGGGGACATTCTTTGCGTGATGTCACAATGGGGGG
AGATCGAGGACATAAACCTGTGCCGAGAGAAGGATACAGGGAAGTCCAAG
GTATGAAGATGGGCAGGACCAGAAGGGCAGAGCATGCCAGTGTCGCGCTG
TGCGCCTTCAGGCTTGGTGTGGGGCACGGCTGGTGTGTCACCGTCCAACT
GCTGTGTACTCCGAGTATTGTCCGCGTATAGTGCAACGCTATTGTAGATG
TCGCCTCCTGCGAATAAAGTCCTTGCTAACGGCTTCTTCTGTACGACCGG
TGTTGGCGTAGCTCCTGTGACGCCTTGGATGTCTCATTGCATTCACATTC
TGTGCGACGACACACTTGAGACGGAGGGACTACCGCTTTTCGTTTGTAGG
TGTGGCGGGTTGAGGTTGCCCCGCAATTTTTCTCTTTTTCTTTGCACGGG
GGAGATGTCTTTGATGTTGACGACATACATCCCGTTCGACTGTGGGAATA
TCTCAAATGGGTAGTCTTTCTGTGCGTTTATTTATTTCTCCTTAATTAGT
GTTTTGTGATGTGAAGACAAAAGCAACAACACCTGCTGGCATCACTGACA
AAAGATTCAGTGTATAGGCATAAATAGATTCGATATGAGCCCAGTACCCA
GCCGGTTTTCCTCCACTCACTGCGAAGGCTCCAACACATCCCCTTCGACT
GTGTTTTTATCTCGAACGTATATCTTTTTGAGTTTGTATTCCCTAAAATA
CACCACATTTTGGGTTGCAGGGGTTCTGCTTCATCAAGTACGAGAACCAG
AAGAGCACCATCCTCGCCGTGGACAACTTCAACGGCATCGACCTGTTGGG
TCGCACGATTCGAGTCGACCACAAGCACAAGTACTCCCTGCCCGCCGAGG
TGCGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGCGG
TCCCGTAGCGTCCGTGGATAGCCAATTGCACGGGGATAACTGCGGCTGAA
GCACCGATATCTTGAAACAGCATGGTACCACGCACGTTGCACAACCTTCC
TCGCCTCTACCTCTAAGAACTGCGCTAACTGAAAGACTGCTTATGTTGGT
CATGCTTTTGGTGTCTACGCTGTAGACCAGAGTGTGCGTTTCTCGGTTGT
GCTTTCAACGCGTATGTTGTGCATCGTGGTTGCACGCGACCGCGTCGGTT
CAATCAGGTGAGGGAGAAAGCGGAGAAAGAGGACGAGGAGAGGGTCGCCC
GGGGTGAGGCGCCGTCGGAGAAGGGGCCGCAGTGGAGGCCTGGTGTCGCG
TACGAAGGGAAACAACTGGCCACATCTCACAACTTCCACAAGGGTGTTGA
CGTGTTCGCCAAACCAGAGCAGGTGTGACTTTGACAGAGATCATTTGCAG
ATTTTCAGCGGGTGCCTTCAGCGGGTTGCCTTTCAAACGAGTTCTTCTGT
ACTCTTTGTTACGATTTACTGGCGGTCGCCCCGGTTGTCTAGCTGGTGTC
CTCGAAGATCTACTGGCCGCAGTCAGGGGTTCGAATCCCGGCGTAAGCGC
GCTGTTCTTGCAGATGTGTATTTTCTTTCGCTTCCGTTCCTGGCCTGGGT
GGAAACCGCTAGTTCGTGTGTACACAGAGGGAAGAGAGAGCCGCACTCTT
GTCGCATTTAAAATCGAAGGCATAGAACCGCAGGAGGGTTGCGGAGGGGG
CCTCAGGGAGAGGAACCCTTATGTGTGACCGACCACGGGTAGGAGTAAGT
GCCACAAATGCTGCGAGCGCTGATCTAGAGTCAAGACAAATAAAAAAATA
AAAGCGTGATGATCAAGCACAAGACACAGCACAGAGAGCAACACGTGCGT
TGGCGCGCTCGGACCGACCGCTGGGTGTGTGATATCCGACCGCTGGGTGT
GTGATATCCAAGGCGTGTACGTTTCAGAGAGTCATGCGTTTGAGCCGAAA
TTTTGACCGAAGCCATGTTTTTTCCTCAGACCCGCGGTTGAGAAGGTTGG
GGGCCGTGGCGTCCGACACAGCTTTTCCCCGAGCCCGTTTCCTTTCGTGC
TGGAGCTACGCGCTGCTGTCCTCGTTCGTTTGTACCCCTCGTCTGACCGT
GGGACATCCGATGCCGGAACGGACTGCGCCCGAAACACGGTCCCAATGCT
GTTGCTTCCGTTTGATTTGGCGAACGCAAACAATTTGAAACTCGCACACA
TAGGGTTCTGGATCGATCGATGAAAGCGATGGTGCTGAGGGAACACTGGG
CGAGTCGACGGCCGCAAAGAAAGAACGGCGGGAGGCAAAGCGGAAAAGAA
AAGAAGCTCGAGCGGATGCGCGGGAGCGGAAGAAGATGGACAAGGAATCC
TCTGCCGGGGGCGACGGCAGCGACGGCCACCACAAGAAGAAGAAGAGCAA
ACACCACAAGAAGGACAAGAAAAAAGAGGACAAGAAGGAAGGCCGCGCCC
ACGGCAAGGACGAAAAAAACAGAAGCAGCGAACATCCACGGGCCGGTAAC
GGCGGGCGGGGTGAGGAGAGGGTGGGCGGACGACACGATCATCGTCGCGA
CAAGGAGCCACCGACGGGCCGCAGTAGCGGCGCCGACGCGAGCGGGGCTT
GGGAGCGAGGCGCACGCGCGCCCGGCGATGGCCCGTCTTCCGGTGGTACC
CCCTTTTCTTCTTCTTCGCAACCTTCAGGTCGTGCCCCGGCGTTGGCACC
ACCAGTCCCTCTGTCTTCGGGCAATGTGATGGATTGGAGGGGACTGGGCG
GGCGCGCCGCCGGCGGACGGGGAGGAGGGGCGGGGGGCGGGCGGGGGGGT
AGGGAGGGGGGCGGGCGAGGCGGAGGGGGCCGGCAGAGTGGCGGGCGCGG
TAGAGAAGGGATGAACTCAATGGGGGGTATGGATCGTCGACGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig711:8471..11666-

>mRNA_Ecto-sp13_S_contig711.18203.1 ID=mRNA_Ecto-sp13_S_contig711.18203.1|Name=mRNA_Ecto-sp13_S_contig711.18203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:8471..11666- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGTGATCCAGGAGATTAGGCGCATCAACGAGCGGGAGCTCGAGCA
AGGGGTGTCCGGCAAGGCCTCATGGCACCACGAGTACAAGGACAGTGCGT
GGGTCTTCGCCGGAGGCTTTCCGTACGACCTCACCGAGGGGGACATTCTT
TGCGTGATGTCACAATGGGGGGAGATCGAGGACATAAACCTGTGCCGAGA
GAAGGATACAGGGAAGTCCAAGGGGTTCTGCTTCATCAAGTACGAGAACC
AGAAGAGCACCATCCTCGCCGTGGACAACTTCAACGGCATCGACCTGTTG
GGTCGCACGATTCGAGTCGACCACAAGCACAAGTACTCCCTGCCCGCCGA
GGTGAGGGAGAAAGCGGAGAAAGAGGACGAGGAGAGGGTCGCCCGGGGTG
AGGCGCCGTCGGAGAAGGGGCCGCAGTGGAGGCCTGGTGTCGCGTACGAA
GGGAAACAACTGGCCACATCTCACAACTTCCACAAGGGTGTTGACGTGTT
CGCCAAACCAGAGCAGGGTTCTGGATCGATCGATGAAAGCGATGGTGCTG
AGGGAACACTGGGCGAGTCGACGGCCGCAAAGAAAGAACGGCGGGAGGCA
AAGCGGAAAAGAAAAGAAGCTCGAGCGGATGCGCGGGAGCGGAAGAAGAT
GGACAAGGAATCCTCTGCCGGGGGCGACGGCAGCGACGGCCACCACAAGA
AGAAGAAGAGCAAACACCACAAGAAGGACAAGAAAAAAGAGGACAAGAAG
GAAGGCCGCGCCCACGGCAAGGACGAAAAAAACAGAAGCAGCGAACATCC
ACGGGCCGGTAACGGCGGGCGGGGTGAGGAGAGGGTGGGCGGACGACACG
ATCATCGTCGCGACAAGGAGCCACCGACGGGCCGCAGTAGCGGCGCCGAC
GCGAGCGGGGCTTGGGAGCGAGGCGCACGCGCGCCCGGCGATGGCCCGTC
TTCCGGTGGTACCCCCTTTTCTTCTTCTTCGCAACCTTCAGGTCGTGCCC
CGGCGTTGGCACCACCAGTCCCTCTGTCTTCGGGCAATGTGATGGATTGG
AGGGGACTGGGCGGGCGCGCCGCCGGCGGACGGGGAGGAGGGGCGGGGGG
CGGGCGGGGGGGTAGGGAGGGGGGCGGGCGAGGCGGAGGGGGCCGGCAGA
GTGGCGGGCGCGGTAGAGAAGGGATGAACTCAATGGGGGGTATGGATCGT
CGACGGTAG
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