mRNA_Ecto-sp13_S_contig7109.18200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7109.18200.1
Unique NamemRNA_Ecto-sp13_S_contig7109.18200.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: D7FM74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM74_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 2.820e-164
Identity = 225/232 (96.98%), Postives = 229/232 (98.71%), Query Frame = 1 
Query:   76 MASQLSVDRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERDCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNTDA 771
            MASQLSVDRSVRVSVHTSGM+WAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDA GDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVER+CQKMTEFLVLEGE+EA DASETFTK SW+RLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNTDA
Sbjct:    1 MASQLSVDRSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERECQKMTEFLVLEGEAEAHDASETFTKRSWLRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNTDA 232
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: A0A1Y5TZ85_9PROT (ChrR Cupin-like domain protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZ85_9PROT)

HSP 1 Score: 236 bits (601), Expect = 2.600e-71
Identity = 118/228 (51.75%), Postives = 158/228 (69.30%), Query Frame = 1 
Query:   76 MASQLSVDRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERDCQ-KMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEGEWLPPSS 756
            M+ +L+ D   RV++ T+ M W  SPSPSVWRKR+ L GP E+GRVT++VRY+  S+F  H HPDGEEILVLEG++ D  GD+PAG+Y+LNPEGFRHAP S DGC+L+VKLRQ GGP R H  +DT ++ W+  ++PG   K LY+ PD +E MR+ + D GA+V R    +  E LVLEG    +D   T+ K SW+R P G+  S+ S  G  ++VK+G  LPP+S
Sbjct:    1 MSHELNADFHARVAMDTAAMAWQASPSPSVWRKRLDLSGPAEAGRVTALVRYEPGSRFPAHEHPDGEEILVLEGTFSDEHGDYPAGSYLLNPEGFRHAPFSVDGCLLFVKLRQFGGPGRAHHAIDTAALDWQPGNMPGRSVKPLYAAPDGIEQMRLVRLDPGAQVPRHVHDRGEEVLVLEGAIADEDG--TYGKGSWLRFPDGSAHSVRSEHGAVIYVKQGH-LPPAS 225
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: A0A7C2JUM9_9GAMM (Anti-sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JUM9_9GAMM)

HSP 1 Score: 214 bits (544), Expect = 9.550e-63
Identity = 107/220 (48.64%), Postives = 146/220 (66.36%), Query Frame = 1 
Query:   79 ASQLSVDRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVER-DCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEG 735
            ++ ++ D   RV+V T+ M W PSPS +V+RKRV L GP ESG+VTSVVRY   + F+ H HPDGEEILVLEG + D  GD PAGTY+LNPEGFRH+P SRDGCVL+VKLRQ  G +R+H  L T++++W      GV  + LY+     ++MR+E+W   A++   +     E  VLEG    +D    F + +W+RLP GA  S ++A GC +++KEG
Sbjct:    7 SAAINGDLGRRVAVDTAAMAWTPSPSRTVFRKRVHLVGPPESGQVTSVVRYGPGATFHTHAHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHSPFSRDGCVLFVKLRQFPGRTREHVALRTDTLEWRPAARAGVAVRPLYAQAGFADTMRLERWPPEARLRPIEYPSGAELFVLEGSFRDEDGE--FARGAWLRLPPGAAHSPSTAEGCVLYIKEG 224
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: UPI000688EB27 (cupin domain-containing protein n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI000688EB27)

HSP 1 Score: 213 bits (543), Expect = 1.390e-62
Identity = 108/217 (49.77%), Postives = 140/217 (64.52%), Query Frame = 1 
Query:   97 DRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKV-ERDCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEGEWL 744
            D S RV +  S MDW PSPS +VWRKR  L G  ESG+VTS+VRYD  ++F  H HP GEEILVLEG + D  GD PAG+Y+LNPEGF HAP S +GC+L VKLRQ  G  R+H  LDT  + W+ ++I GV  K+LY+  D+ E MR+E W   +   E +  +  EF V+ GE E  D    +   SW+RLPAG+  +  SA GC++++K G  L
Sbjct:    7 DLSKRVQLDASSMDWQPSPSGTVWRKRFHLVGEGESGQVTSLVRYDPGARFPSHPHPGGEEILVLEGIFSDQQGDWPAGSYLLNPEGFEHAPGSAEGCLLLVKLRQFAGQERRHLALDTAELAWQPSEIKGVLVKQLYADNDYPEQMRLEHWAPDSHCGELEYPEGAEFFVISGEFE--DEQGRYPAGSWLRLPAGSRHNPRSALGCELYIKTGHLL 221
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: A0A523JHQ7_9DELT (Anti-sigma factor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JHQ7_9DELT)

HSP 1 Score: 210 bits (535), Expect = 1.870e-61
Identity = 112/223 (50.22%), Postives = 145/223 (65.02%), Query Frame = 1 
Query:   76 MASQLSV--DRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVER-DCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEG 735
            MA  LS+  D S  V +HTS M+W PSPS SV RKRV L G  E+G+VTSVVRY  NS F  H HP+GEEILVL+G + D  GD PAG+Y+LNPEGFRHAP S+ GC+++VKLRQ+GG  R+H  L T+ + W+     G++ K LYS     + MR+E+W  GA       +   E LVL G  E +  S  + K SW+RLPAGAT +  S  GC++++K G
Sbjct:    1 MAKTLSINGDLSQSVVMHTSSMEWLPSPSGSVLRKRVHLVGGAEAGQVTSVVRYLENSSFAAHDHPEGEEILVLDGVFSDEHGDWPAGSYLLNPEGFRHAPFSKPGCLIFVKLRQYGGRGRRHVALCTHELPWKSGPHAGIELKLLYSEAGFPDEMRLERWAPGATPGTVSYEGGAEILVLRGRLEDEQGS--YDKLSWLRLPAGATHTPVSPNGCELYLKTG 221
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: A0A536YCZ3_9PROT (Anti-sigma factor n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YCZ3_9PROT)

HSP 1 Score: 209 bits (532), Expect = 7.100e-61
Identity = 115/241 (47.72%), Postives = 145/241 (60.17%), Query Frame = 1 
Query:   76 MASQLSVDRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVER-DCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNTDAS*RGRLAR 795
            M   ++ + SVR    T+ M+WAPSPS SVWRKRV L GP ESG+VTSVVRY   S+F  H HP GEEILVLEG + D  GD PAGT++LNPEGFRHAP S  GCVL+VKLRQ  G  R H  +DT+ + WE + +P V  K LY      + MR+E+W+  A +     ++  E  VL GE    D +  ++   W+RLPAG+     SA GC V++K    LP  SS  D     R  R
Sbjct:    1 MCEAINGNLSVRAVADTTRMEWAPSPSRSVWRKRVHLVGPPESGQVTSVVRYGPRSRFPAHDHPQGEEILVLEGVFSDEHGDWPAGTFLLNPEGFRHAPFSEPGCVLFVKLRQFPGRERSHIVIDTHKLAWEPSSLPAVAYKALYQQTGFSDVMRLERWEPQADLGVVSYEQGAELFVLGGEF--VDEAGAYSAGCWLRLPAGSEHHPRSAGGCTVYIKRSG-LPYLSSAADQQGAMRFLR 238
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: A0A7Y2ICR3_9GAMM (Anti-sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2ICR3_9GAMM)

HSP 1 Score: 209 bits (531), Expect = 8.010e-61
Identity = 103/214 (48.13%), Postives = 138/214 (64.49%), Query Frame = 1 
Query:   97 DRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERDCQKM-TEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEG 735
            D +VR  + T  M+W  SPS +VWRKRV L G  ESG+VTS+VRY   S F  H HP+GEEILVLEG + D  GD PAGTY+LNPEGFRHAP S+ GC+L+VKLRQ  GP R+H  +DT   +W+ T   GV  K LY    + ++ R+E+W+A +       +   EF VL+GE E  D    +   +W+R+PAG   S  ++ GCQ+++K+G
Sbjct:   11 DPTVRAFMDTQAMEWTASPSGTVWRKRVHLVGAPESGQVTSIVRYQPESSFPAHDHPEGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPFSQQGCLLFVKLRQFPGPDREHHVIDTRDREWQPTQRKGVWQKSLYRQAGYSDTTRLERWEAESTAGTISHEQGAEFFVLDGEFE--DDEGVYPAGTWLRIPAGGMHSPGTSRGCQLYIKQG 222
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: A4AC30_9GAMM (Anti-ECFsigma factor, ChrR n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4AC30_9GAMM)

HSP 1 Score: 207 bits (527), Expect = 2.760e-60
Identity = 107/220 (48.64%), Postives = 141/220 (64.09%), Query Frame = 1 
Query:   79 ASQLSVDRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVER-DCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEG 735
            AS L+ D S R +V +S +DW  SP   V RKR+   GP ESG+VTS+VRY   S+F  H HPDGEEILVL+G + D  GD PAGTY+LNPEGFRHAP S+DGC+L+VKLRQ  G SRKH  LDTN+ +W  +  PGV  K+LY+     + MR+E+W A   +   +  +  E  VL G     DA   +   SW+RLP G++L+      C++++KEG
Sbjct:    3 ASILNGDLSRRTAVDSSTLDWQESPGGEVLRKRLHRVGPAESGQVTSLVRYQPGSRFPAHAHPDGEEILVLDGVFSDEHGDWPAGTYLLNPEGFRHAPFSKDGCLLFVKLRQFPGESRKHVALDTNTAEWRSSVRPGVAWKKLYAQDSFSDHMRLERWAAPGNIGTLNFPQGAELFVLRGSF--ADAQGDYPTHSWLRLPPGSSLTPEGNTPCELYIKEG 220
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: A0A536WFI8_9PROT (Anti-sigma factor n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WFI8_9PROT)

HSP 1 Score: 206 bits (525), Expect = 5.440e-60
Identity = 108/219 (49.32%), Postives = 137/219 (62.56%), Query Frame = 1 
Query:   76 MASQLSVDRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVER-DCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVK 729
            M   ++ + SVR    T+ M W PSPS SVWRKRV L GP ESG+VTSVVRY+  S+F  H HP+GEEILVLEG + D  GD PAGT++LNPEGFRHAP S  GCVL VKLRQ  G  R+H  +DT+ + WE + IP V  K LY      + MR+E+W+  A +     ++  E  VLEGE    D    ++   W+RLP G+     SA GC ++VK
Sbjct:    1 MVEAINGNLSVRAVADTTLMQWTPSPSGSVWRKRVHLVGPPESGQVTSVVRYEPASRFPAHDHPEGEEILVLEGVFSDEHGDWPAGTFLLNPEGFRHAPFSEPGCVLLVKLRQFPGRERRHVVVDTHKLAWEPSSIPAVAHKPLYQQAGFSDLMRLERWEPQADLGIISYEQGAELFVLEGEF--ADEVRAYSAGCWLRLPVGSEHHPRSAGGCTLYVK 217
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BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Match: B8KL61_9GAMM (Anti-ECFsigma factor, ChrR n=1 Tax=gamma proteobacterium NOR5-3 TaxID=566466 RepID=B8KL61_9GAMM)

HSP 1 Score: 206 bits (523), Expect = 1.150e-59
Identity = 106/220 (48.18%), Postives = 138/220 (62.73%), Query Frame = 1 
Query:   79 ASQLSVDRSVRVSVHTSGMDWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKV-ERDCQKMTEFLVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEG 735
            AS L  D + R++V++S  DW  SP   V RKR+   GP ESG+VTS+VRY   SQF  H HP+GEEILVLEG + D  GD PAGTY+LNPEGF HAP S DGC+L+VKLRQ  G +RKH  LDTN  +W  +  PGV  K+LY+     + MR+E+W     V E    +  E  VL+GE    D    + +  W+RLP G++LS      C++++KEG
Sbjct:    5 ASALHGDLNSRIAVNSSTQDWEASPGGEVLRKRLHRVGPAESGQVTSLVRYQPGSQFPAHAHPEGEEILVLEGVFSDEHGDWPAGTYLLNPEGFSHAPFSTDGCLLFVKLRQFPGDTRKHVALDTNESEWRSSVRPGVSWKKLYAQEPFSDHMRLERWSTPGSVGELKFPQGAELFVLDGEF--SDGLGDYPEHCWLRLPPGSSLSPEGNTPCELYIKEG 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7109.18200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM74_ECTSI2.820e-16496.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y5TZ85_9PROT2.600e-7151.75ChrR Cupin-like domain protein n=1 Tax=Oceanibacte... [more]
A0A7C2JUM9_9GAMM9.550e-6348.64Anti-sigma factor n=1 Tax=Gammaproteobacteria bact... [more]
UPI000688EB271.390e-6249.77cupin domain-containing protein n=1 Tax=Marinobact... [more]
A0A523JHQ7_9DELT1.870e-6150.22Anti-sigma factor n=1 Tax=Deltaproteobacteria bact... [more]
A0A536YCZ3_9PROT7.100e-6147.72Anti-sigma factor n=3 Tax=Betaproteobacteria bacte... [more]
A0A7Y2ICR3_9GAMM8.010e-6148.13Anti-sigma factor n=1 Tax=Woeseiaceae bacterium Ta... [more]
A4AC30_9GAMM2.760e-6048.64Anti-ECFsigma factor, ChrR n=1 Tax=Congregibacter ... [more]
A0A536WFI8_9PROT5.440e-6049.32Anti-sigma factor n=3 Tax=Betaproteobacteria bacte... [more]
B8KL61_9GAMM1.150e-5948.18Anti-ECFsigma factor, ChrR n=1 Tax=gamma proteobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7109contigEcto-sp13_S_contig7109:1108..6548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score477.2
Seed ortholog evalue4.7e-132
Seed eggNOG ortholog2880.D7FM74
Model size1553
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.ChrR Cupin-like domain
EggNOG OGs2SA9Z@2759,COG3806@1
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-16_004810.1
Cds size777
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7109.18200.1prot_Ecto-sp13_S_contig7109.18200.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7109 1108..5759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.279051-CDS-Ecto-sp13_S_contig7109:1107..12081681463975.279051-CDS-Ecto-sp13_S_contig7109:1107..1208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7109 1108..1208 +
1681463975.3016503-CDS-Ecto-sp13_S_contig7109:1931..20521681463975.3016503-CDS-Ecto-sp13_S_contig7109:1931..2052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7109 1932..2052 +
1681463975.312134-CDS-Ecto-sp13_S_contig7109:2338..24231681463975.312134-CDS-Ecto-sp13_S_contig7109:2338..2423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7109 2339..2423 +
1681463975.3215055-CDS-Ecto-sp13_S_contig7109:2960..30071681463975.3215055-CDS-Ecto-sp13_S_contig7109:2960..3007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7109 2961..3007 +
1681463975.3300865-CDS-Ecto-sp13_S_contig7109:4060..42181681463975.3300865-CDS-Ecto-sp13_S_contig7109:4060..4218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7109 4061..4218 +
1681463975.3453975-CDS-Ecto-sp13_S_contig7109:4812..49341681463975.3453975-CDS-Ecto-sp13_S_contig7109:4812..4934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7109 4813..4934 +
1681463975.3602667-CDS-Ecto-sp13_S_contig7109:5616..57591681463975.3602667-CDS-Ecto-sp13_S_contig7109:5616..5759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7109 5617..5759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.3699038-UTR-Ecto-sp13_S_contig7109:5759..62871681463975.3699038-UTR-Ecto-sp13_S_contig7109:5759..6287Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7109 5760..6287 +
1681463975.3792977-UTR-Ecto-sp13_S_contig7109:6300..65481681463975.3792977-UTR-Ecto-sp13_S_contig7109:6300..6548Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7109 6301..6548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7109.18200.1

>prot_Ecto-sp13_S_contig7109.18200.1 ID=prot_Ecto-sp13_S_contig7109.18200.1|Name=mRNA_Ecto-sp13_S_contig7109.18200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MIIPSLTPTVLLLTAPKLRSFHHTNMASQLSVDRSVRVSVHTSGMDWAPS
PSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGS
WQDATGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLD
TNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERDCQKMTEF
LVLEGESEAQDASETFTKWSWVRLPAGATLSMTSAAGCQVFVKEGEWLPP
SSSNTDAS*
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mRNA from alignment at Ecto-sp13_S_contig7109:1108..6548+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7109.18200.1 ID=mRNA_Ecto-sp13_S_contig7109.18200.1|Name=mRNA_Ecto-sp13_S_contig7109.18200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7109:1108..6548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCATTCCATCTCTCACACCAACCGTCCTATTGCTCACTGCACCGAA
ACTTCGATCCTTTCATCACACCAACATGGCGTCTCAACTTTCGGTCGACA
GGTGCGCGAAACACGACAACATGATGAGAGGTTGAATCAAAGGAATCACG
AACGTCCGTCCGCGAGCGCCCGCTTCGAGCAGGCAGTGGAGCAGTATCTA
TGGCACCAGCCAGTAGTAGGGTTTTTCCACCGTACCCGCACCCTTTGTCT
TCTACTGCTGTCGATCCAGGGTTGTTGCAGTGAAGATGAGATTCGTTCGT
TCGGTTTCCATACCTGTAGCAGCAGTAGTTACGCTTGTACAGCTGAGAAC
ACCTAACAGTCGCAGCCGGTTGCAGTGGCAACAGCGTCCACCAGCACATG
CAAGCGCAGGGGCGATCTGCACGGGCAGGCAGGAGACCGCGATATCACGG
TCGTGATTGGGTGAGGACATCGCGATCGCGATCAGCACGTGACGCTGCTC
TCGACACACTCTAGTCTACAGCAGTAGACTCGTAGTGATGGTGCTACAGC
TGATGATGCCTGCCGTGTTGAGCAGATGATACGTTCGTTGCCGATCGATG
TCTCCATCCCGCCAATCCCACGCAAGTTTAAGTGCGTTTGGGTGTGGGCA
GAAAGAGCAGAACCAGGGCGTGGTCAGATATCAAATAACTGAGGCAGGCA
ACACATGGGCCCGAATAACGTGTGCACGTTGCCCCCAGATTGTGACACCC
GTGCGTTACAAATACTCAACTTTGCTTTTACACGATTCCCCCGATGCATG
CTACGGTCCGTGTTCACTTCCCAGGAGCGTGCGGGTCAGCGTCCACACCA
GCGGAATGGATTGGGCACCGTCTCCATCTCCCTCTGTTTGGAGGAAGCGA
GTTGCTCTGGAAGGCCCTCAAGAGTCTGGCAGAGTTACTTCTGTGGTGAA
TGACGCTCGCGAGCGAGACCGCCTAATGTTGGAAGCTGCAGCTGAAAAGC
AAAGAAACAGCGAGGAATGCTGAGAGGGTTGAACCGATTGCGCGAAGAGC
AGACAGTTTCAGGCACTCGAGTAGCTCATCGAATGAAGTGGCGATCTCCT
TGTTGCTTATGGCGCGCCGCATGTTTGCGTCTGCTCCACGAACACTCTAC
AGCATTGTGAAATTCTCTCTCAACTTGTCCTCTATCACCTTGTTTCCCCG
TTGTCTCTTGTTGGACCTTTTCGCCCGCGAGGTGCGCTACGACGCCAACA
GCCAGTTTAATGAGCATGGTCACCCAGATGGTGAAGAAATCTTGGTCCTT
GAGGGTTCGTGGCAAGGTGACCTTTCGTGCGCATTGAGTCCTGTTTCCTT
GGCGTGTTCACCGGTGGATATCGAATCAACGGCGGAAACTACTACAACAT
GGCACATGACACTGTTTCTGCTTTTTTCGCTGTGTCATATCCTAGCAGGT
GGGCCGTCCTGGCTCGTTCTCCTATGGTTTTCATGTATCCCTTGATGCTC
CCTGTAAGAAACCTTCGATACTCTTGAGAGTTTCCCCTGGCCGTCGCTGT
TACGGAACCTAACAAGACCACCCCGTCCTAATGCATCAAGCACTACGATT
TTCCACACGCAAGCTGTCAACTGTTCTAGTACGTCGTTTGCCAACTCTCG
TTGACGATGAACGAGACGTCGTTCTTGGAGAGATCGAGCTTACGCTTTCA
CGGTTTTCCGTCAGGACAACACACCGTATCGCGCTCACCCTAAACTCTGC
CCTTTCCCACTCTTTCCCTCTGCCTCTTCTCTTCCCTCTCACTCGCGTGG
CGTGTGTGTGTTGGTCTACCTTCTCTACGTTGGCGTCCGTAAAATTGACG
AAGATGCCACCGGAGACCATCCCGCCGGCACGTACATGCTCAATCCGGAG
GTACGTGACGCGGATTGGTTCAAACGAAGCCGGATTGTGGCTCCATGCCT
TTTGTTTGTGAGGTCCCGGAAGACCCCCCAAGATGTGTAGGTACAATATC
ATCGAATCCCTGATGTTTTGTAACGTTCTGCTCCTCAGAGCTGGTCTTTC
ATGCAGCCTCTATCAGAGCTACCGCCACACGCCAGAAGGGTACGCTGTTT
CAGAAGACGTACCACGCTTTTGCGCTGGCCGTAACTCTGTGACCCACCCC
TCTTCGCCGCCTCTTCAGTCTCTATCCTGCTTGTACGCGAAGTTGTCGAT
GTCTTGTGAACACAGGCTAGATTTGGGTGACGAGCTCATGTGGCTAACCA
CCACGATCACCCACGAAAAAAACATGAACAGCAGGATGAACAGCAAGGAT
TTGTGCAGCAAGAGTTCGCACGCCAACGATCTTGGTATTGTCGTGAAGTT
ATCCCCCCCCCCCTCACGCTCCGCTCCCTCGGTGTTGGCCATCGGGGTTG
GGTTTTTGTCGCTTGGCAACGACGTTGTAAAACACGCGGATCACTTCGTG
AGCTCGGCAACCAGGTTACCGCTTTATTTATACTTTGAATCATTTTTTTT
GCCTCTGTCTTTTTTGGGGGGTAACCATAATGGTCGTCGAGTATGTAGTA
CGGGTCGAGAAACCTCACTCCGCGCAAAGGGGATGATCGTACCACCTTGT
ATTAAATTGGTCAAGCACCCTCGAGGCAGTCACACAGTGCTCACAACTAT
CACTGGAAGTGAAAGCACCAGAATATATACGAAGTCATACGCAGCTGTCA
TCCGTACGCAAGGAAGTAAGCCAAGATGCCGAACACCCTGAGCAGGATGC
AGCGCACCCTTCATGCGACTCGCCGACTACCTGACGGTGCTTTGCGCTTG
GTGATGTGAGAGCCTTGTCCGGTGAGAACCCGACATACTCCGTCCCGGCT
TGGTAGGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTAT
TGAGTACACCCGCCCCCCTCCCGCTCGACCACCCCCGCTTGACACGTTGG
CAGGGGTTCCGTCACGCTCCATGCTCCAGGGACGGTTGTGTGCTCTGGGT
AAAGCTCCGACAACACGGCGGCCCTTCTCGCAAGCACACTCGCCTCGACA
CCAACAGCATGCAGTGGGAAGACACCGACATCCCTGGGGTGAAGGCCAAG
GAGCTGTATTCGTGAGTCTGCGGGACCTCCGTTGTGTGCTGCCGTCCTGT
AGGGCTCAGTGAACAGTCAGTCCGGAAATATTGTTTCGTGTTTCGGTTAT
GGACACGGGAGGGTACACGTTGGTGTGTTTGCTTTCGTGCTAGAAGCTCT
TGCTCACGCTGTTGGGGGGCGTCGCCATGGTTGCCCCAAGCGTGGTATCC
ACTCGCGTTCGGCAACTTTTGCTGTCGAGGGGTGTGCGGTTTCTCTGCGC
TGCCGATGCTGAACGAACGTTCCGAGTCGCGGCGAAGGGAGCACCACGCG
TTTCGGTTGAAACCTTTTCACCTATCAAGCAAGCCCTATCGTAGAGACCT
CGGCAAGATATGGCATGCCCGCGAACAACAAGAGCAAGGCTGTGTCGGCC
AATCTTTTTGCTTGCTGTTGATGCGTCGTTGCCCATCTACTGGAACGAAC
TACCACCCCTTTGCAATTGAAACGGCAACAACCTCGCTACCTGTTTGTCG
GGGTCCTCGTCTATTCACCATGAAGAACGAAGGTACACATCAACTCACAA
TCCTCGTCGTGTATCACGTAGCATCTCCCATCCCGTGATTCACACACGAG
CACAGGCACCCCGATCATGTCGAGTCCATGCGAATCGAGAAATGGGATGC
TGGCGCAAAGGTCGAGCGCGATTGCCAGAAGATGACCGAGTTTCTGGTGC
TTGAAGGGGAGTCTGAGGCACAGGATGGTGAGATGCTGCATCCTCCTCTT
CAGTACCGGTGTACTCAGTTTGACCGCACGAGATAGTTACTTTTGTGCCA
CCTCTTTTACTACCGGTGTTTATCCCAGAGCGACCCTTACCTTGAGAACT
TTCGTGCTTCTTAACGAGAGTTGTGTGTGACTGACCGATACCGCCGGGTG
TGAAACGGAACCTGTCTGAGTTCAACTGCTGTGTTTCATTCGGTTTTCAT
TTTTTCCTTTCACTCTAGTACGAAACCCCTACTGGCTACAGCCTTTACTT
ATCTTGAAAGCCAAGCTCACTTTTTCCGACATACTTGGGAGCCATTGTTC
ATATCGAACACTCCTTTCACGCCCAATCACGGGTGAATCTTCTGCAGCTC
TAGTCTACTGTAGTCTGCTGTCGTACGTTCAAGGTTGGAGCCGAGGTCCA
AGGCGCAGGGCGAAATAAACCAACATTTCAACCCCAGCCAATATTTATTT
ATTGAAACATGCCAATAGTTACCATTATAGCAAGGGCAATGATGGAGCTC
ATGTCCTGGGTGGGCATAAATACCGGAACCTTTCAAGTTTTTCGTTGACT
GCTGTTTCGCACAGTATGGCCACAATCCGCAACGTTTTTTGGTGCTTGTA
CTGTATATGGTATATACTTCCCGGTGACGGCGTGCCCTCGTGCTTGCTGT
GCTCCGCAGCGAGCGAGACCTTCACAAAGTGGAGCTGGGTGAGGCTTCCC
GCGGGAGCCACGCTGTCGATGACATCCGCAGCGGGCTGTCAAGTGTTCGT
CAAGGAGGGGGAGTGGCTCCCGCCCAGCAGCAGCAACACCGACGCGTCGT
GAAGAGGCCGGTTGGCTCGGTGCTTCACTGCGTCCCACGGTATTAAGAAC
CAGCAAGGAAGAGACTGGCGCTTGTGATCGGTGGTGGTGCCGACCCTCGA
GGGTGCATTTCGACCGAAGCGTAAAATACCGTGTTGCTTGGTGGATCGCG
GAAGGTCGCCACGGCGATGGTAGTGAATATAATGGTCGGTGTATACATGA
ACGTATGGGGTGCAGTGTCGAACGAATATCGGGGATTAGGGGGACATTCT
CTCGTTGGTAAGACTTCGGCTTTTTGTATTTTCCCTACAACAGCGAGAAC
GAATTGTGTGTGTGGGTGATTTCTTGGACATCTACTCAGGTAGTTGGTAG
GCCGGCCCGTTCTTAAAGTGTGGTAGATAGCATCCGAAGTGAGCTACAGC
AGTACGAAAAGAAAATGATAAAATGATTGGACGAATACAGATGGCGCCCG
CACTTAAGAACCGCATATTTTGGCCGATGCTCGATGCTTAATTGGTTGCT
CCGAGTTGAGCACCTGTTCTCGTTTTCAAAGTTCTTATTCGAGCAGGAAT
ATCCGTCATGAGAAACTGGGTGCTTGTTCTTATCTCTACGCTTGGGGCCG
CATTAAGAGGACCCCGGGTTTAAGTTTCTGGGTGGATTCAACTTGACACT
TGAGAGCACCTTGTTCACGACAAGAGTATAGTAGACCGTTGATCAACCGA
GACCTCTGGACTAGACGCACCGCAGCTTCCGTGATCACCATAGGGTAGCA
ATACAGACGCGGCATCGCCTGAGTATTTGACACATCTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7109:1108..6548+

>mRNA_Ecto-sp13_S_contig7109.18200.1 ID=mRNA_Ecto-sp13_S_contig7109.18200.1|Name=mRNA_Ecto-sp13_S_contig7109.18200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7109:1108..6548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCATTCCATCTCTCACACCAACCGTCCTATTGCTCACTGCACCGAA
ACTTCGATCCTTTCATCACACCAACATGGCGTCTCAACTTTCGGTCGACA
GGAGCGTGCGGGTCAGCGTCCACACCAGCGGAATGGATTGGGCACCGTCT
CCATCTCCCTCTGTTTGGAGGAAGCGAGTTGCTCTGGAAGGCCCTCAAGA
GTCTGGCAGAGTTACTTCTGTGGTGCGCTACGACGCCAACAGCCAGTTTA
ATGAGCATGGTCACCCAGATGGTGAAGAAATCTTGGTCCTTGAGGGTTCG
TGGCAAGATGCCACCGGAGACCATCCCGCCGGCACGTACATGCTCAATCC
GGAGGGGTTCCGTCACGCTCCATGCTCCAGGGACGGTTGTGTGCTCTGGG
TAAAGCTCCGACAACACGGCGGCCCTTCTCGCAAGCACACTCGCCTCGAC
ACCAACAGCATGCAGTGGGAAGACACCGACATCCCTGGGGTGAAGGCCAA
GGAGCTGTATTCGCACCCCGATCATGTCGAGTCCATGCGAATCGAGAAAT
GGGATGCTGGCGCAAAGGTCGAGCGCGATTGCCAGAAGATGACCGAGTTT
CTGGTGCTTGAAGGGGAGTCTGAGGCACAGGATGCGAGCGAGACCTTCAC
AAAGTGGAGCTGGGTGAGGCTTCCCGCGGGAGCCACGCTGTCGATGACAT
CCGCAGCGGGCTGTCAAGTGTTCGTCAAGGAGGGGGAGTGGCTCCCGCCC
AGCAGCAGCAACACCGACGCGTCGTGA
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