mRNA_Ecto-sp13_S_contig71053.18198.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71053.18198.1
Unique NamemRNA_Ecto-sp13_S_contig71053.18198.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: A0A6H5L681_9PHAE (Peptidase_M48 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L681_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.220e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:  154 KVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK 273
            KVVVFTGLL VTPNEDALASVLGHEVGHVVANHAGEKLSK
Sbjct:  191 KVVVFTGLLNVTPNEDALASVLGHEVGHVVANHAGEKLSK 230
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: D7FJA6_ECTSI (Metallopeptidase Oma1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA6_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.340e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:  154 KVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK 273
            KVVVFTGLL VTPNEDALASVLGHEVGHVVANHAGEKLSK
Sbjct:  192 KVVVFTGLLEVTPNEDALASVLGHEVGHVVANHAGEKLSK 231
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: A0A3B9AQS7_9BACT (Peptidase M48 n=1 Tax=Saprospirales bacterium TaxID=2026790 RepID=A0A3B9AQS7_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.610e-9
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:   58 KPIRLAVWSGRDVDFHPATLFPLCTPGSPPFLKVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK 273
            K ++   W    VD      F  C PG     KVVVFTG+L VT NEDALA V+GHEV H +ANH  E++S+
Sbjct:   86 KELKNFAWEFNVVDDPSVNAF--CMPGG----KVVVFTGILKVTQNEDALAVVMGHEVAHALANHGNERVSQ 151
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: A0A7C4NYN7_9BACT (M48 family peptidase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C4NYN7_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 2.190e-9
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  112 TLFPLCTPGSPPFLKVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK 273
            T+   C PG     KVVVFTG+L VT NEDALA V+GHEV H +ANH  E++S+
Sbjct:  102 TVNAFCMPGG----KVVVFTGILKVTQNEDALAVVMGHEVAHALANHGNERMSQ 151
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: M2XY90_GALSU (Metallopeptidase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XY90_GALSU)

HSP 1 Score: 62.4 bits (150), Expect = 2.300e-9
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  127 CTPGSPPFLKVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLS 270
            C PG     KVVV+TGLL +TP +DALASVL HE+GH VA H  EKL+
Sbjct:  223 CLPGG----KVVVYTGLLPITPTDDALASVLAHEIGHAVARHGAEKLA 266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: W7QPR6_9ALTE (Peptidase M48, Ste24p n=1 Tax=Catenovulum agarivorans DS-2 TaxID=1328313 RepID=W7QPR6_9ALTE)

HSP 1 Score: 60.1 bits (144), Expect = 1.000e-8
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  145 PFLKVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK 273
            P  K+ V+TG+LGV  N D LA+++GHEVGHV+ANH GE++S+
Sbjct:   99 PGRKIGVYTGILGVAENADQLAAIMGHEVGHVIANHGGERVSQ 141
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: UPI0019996C86 (M48 family metallopeptidase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=UPI0019996C86)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-8
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   79 WSGRDVDFHPATLFPLCTPGSPPFLKVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK 273
            W    VD      F  C PG     KVVV+TG+L VT NEDALA V+GHE+ H +ANH  E++S+
Sbjct:   93 WEFNVVDDPTVNAF--CMPGG----KVVVYTGILKVTQNEDALAVVMGHEIAHALANHGNERVSQ 151
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: UPI001C380F14 (M48 family metallopeptidase n=1 Tax=Pinibacter aurantiacus TaxID=2851599 RepID=UPI001C380F14)

HSP 1 Score: 59.7 bits (143), Expect = 1.540e-8
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:   25 TQFAASTPLSDKPIRLAVWSGRDVDFHPATLFPLCTPGSPPFLKVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK 273
            TQ+AA+  +SD+ ++   W    V  +    +  C PG     K+VV+TGLL +T NE+ALA V+GHEV H VA H  E++S+
Sbjct:   80 TQYAAANNMSDQ-LQGYKWEYHLVQSNEVNAW--CMPGG----KIVVYTGLLPITQNENALAVVMGHEVMHAVARHGSERMSQ 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: UPI001E8CB1FE (peptidase family M48-domain-containing protein n=1 Tax=Talaromyces proteolyticus TaxID=1131652 RepID=UPI001E8CB1FE)

HSP 1 Score: 59.3 bits (142), Expect = 2.700e-8
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  154 KVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLS 270
            KV VFTGL+ VT +ED LA+VLGHE+GHV+A+H+ E+LS
Sbjct:  230 KVFVFTGLMRVTKDEDGLAAVLGHEIGHVIAHHSAERLS 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Match: UPI001B328C0F (M48 family metalloprotease n=1 Tax=Psychrosphaera aestuarii TaxID=1266052 RepID=UPI001B328C0F)

HSP 1 Score: 58.9 bits (141), Expect = 2.750e-8
Identity = 23/39 (58.97%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  154 KVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLS 270
            K+ V+TG+L +T N+D LA+++GHEVGHV+ANH+ E+LS
Sbjct:  104 KIGVYTGILAITENQDQLAAIMGHEVGHVIANHSNERLS 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71053.18198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L681_9PHAE1.220e-1597.50Peptidase_M48 domain-containing protein n=1 Tax=Ec... [more]
D7FJA6_ECTSI2.340e-1597.50Metallopeptidase Oma1 n=1 Tax=Ectocarpus siliculos... [more]
A0A3B9AQS7_9BACT1.610e-948.61Peptidase M48 n=1 Tax=Saprospirales bacterium TaxI... [more]
A0A7C4NYN7_9BACT2.190e-957.41M48 family peptidase n=1 Tax=Bacteroidetes bacteri... [more]
M2XY90_GALSU2.300e-962.50Metallopeptidase n=1 Tax=Galdieria sulphuraria Tax... [more]
W7QPR6_9ALTE1.000e-858.14Peptidase M48, Ste24p n=1 Tax=Catenovulum agarivor... [more]
UPI0019996C861.120e-849.23M48 family metallopeptidase n=1 Tax=Phycisphaerae ... [more]
UPI001C380F141.540e-842.17M48 family metallopeptidase n=1 Tax=Pinibacter aur... [more]
UPI001E8CB1FE2.700e-866.67peptidase family M48-domain-containing protein n=1... [more]
UPI001B328C0F2.750e-858.97M48 family metalloprotease n=1 Tax=Psychrosphaera ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71053contigEcto-sp13_S_contig71053:377..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score79.0
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D7FJA6
Preferred nameOMA1
Model size273
KEGG koko:K09500
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006508,GO:0006515,GO:0006807,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019866,GO:0023052,GO:0030163,GO:0031090,GO:0031929,GO:0031966,GO:0031967,GO:0031975,GO:0035556,GO:0035694,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons1
EggNOG free text desc.negative regulation of mitochondrial fusion
EggNOG OGsCOG0501@1,KOG2661@2759
Cds size273
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.1116903-CDS-Ecto-sp13_S_contig71053:376..6491681463975.1116903-CDS-Ecto-sp13_S_contig71053:376..649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71053 377..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71053.18198.1prot_Ecto-sp13_S_contig71053.18198.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71053 377..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71053.18198.1

>prot_Ecto-sp13_S_contig71053.18198.1 ID=prot_Ecto-sp13_S_contig71053.18198.1|Name=mRNA_Ecto-sp13_S_contig71053.18198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
NTLLFDQPTQFAASTPLSDKPIRLAVWSGRDVDFHPATLFPLCTPGSPPF
LKVVVFTGLLGVTPNEDALASVLGHEVGHVVANHAGEKLSK
back to top

mRNA from alignment at Ecto-sp13_S_contig71053:377..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71053.18198.1 ID=mRNA_Ecto-sp13_S_contig71053.18198.1|Name=mRNA_Ecto-sp13_S_contig71053.18198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71053:377..649- (Ectocarpus species13 EcNAP12_S_4_19m)
AATACCCTCCTTTTTGATCAGCCAACGCAATTTGCGGCAAGCACACCCCT
CTCTGATAAACCAATCCGGCTTGCCGTGTGGAGCGGGCGCGACGTTGATT
TTCACCCCGCGACGTTGTTCCCGCTGTGTACACCTGGTTCGCCGCCCTTC
CTGAAGGTGGTGGTATTCACCGGCCTTCTCGGAGTTACCCCAAACGAGGA
CGCCTTGGCTTCGGTGCTGGGGCACGAGGTGGGACATGTTGTCGCCAACC
ATGCAGGAGAGAAGCTCAGCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71053:377..649-

>mRNA_Ecto-sp13_S_contig71053.18198.1 ID=mRNA_Ecto-sp13_S_contig71053.18198.1|Name=mRNA_Ecto-sp13_S_contig71053.18198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71053:377..649- (Ectocarpus species13 EcNAP12_S_4_19m)
AATACCCTCCTTTTTGATCAGCCAACGCAATTTGCGGCAAGCACACCCCT
CTCTGATAAACCAATCCGGCTTGCCGTGTGGAGCGGGCGCGACGTTGATT
TTCACCCCGCGACGTTGTTCCCGCTGTGTACACCTGGTTCGCCGCCCTTC
CTGAAGGTGGTGGTATTCACCGGCCTTCTCGGAGTTACCCCAAACGAGGA
CGCCTTGGCTTCGGTGCTGGGGCACGAGGTGGGACATGTTGTCGCCAACC
ATGCAGGAGAGAAGCTCAGCAAG
back to top