mRNA_Ecto-sp13_S_contig71004.18193.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71004.18193.1
Unique NamemRNA_Ecto-sp13_S_contig71004.18193.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5JDD8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.350e-20
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:   23 MPTMVFLHRQHFRQQYAVVGNLSFWYRVGREG--VMLL*SNGGTDVQFSFLGTHTVLQGF*VYLFSQALVYLFLVKC 247
            MPTMVFL+RQHFRQQYAVVGNL FWYRVG+ G    ++    G  VQF  LGTHTVLQGF + +  +AL YLFLV+C
Sbjct:    1 MPTMVFLYRQHFRQQYAVVGNLPFWYRVGQGGGDATVVERWDGRAVQF--LGTHTVLQGF-LGVPLRALGYLFLVRC 74
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5KBR8_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.180e-16
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:   23 MPTMVFLHRQHFRQQYAVVGNLSFWYRVGREG--VMLL*SNGGTDVQFSFLGTHTVLQGF 196
            MPTMVFL+RQHFRQ YAVVGNL FWYRVG+ G    ++    G  VQF  LGTHTVLQGF
Sbjct:    1 MPTMVFLYRQHFRQHYAVVGNLPFWYRVGQGGGDATVVERWDGRAVQF--LGTHTVLQGF 58
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5JUS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.420e-16
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = -3 
Query:    2 PLPSHSVPKRKIADYSILLSEVLSVQKHHGRHGTRSWRG 118
            P  SHS+PKRKIADYSILLSEVLSVQKHHGRHGT SWRG
Sbjct:   21 PSLSHSIPKRKIADYSILLSEVLSVQKHHGRHGTSSWRG 59
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5KPX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.460e-12
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 2 
Query:   23 MPTMVFLHRQHFRQQYAVVGNLSFWYRVGREG 118
            MPTMVFL+RQHFRQQYAVVGNLSFWYRVG+ G
Sbjct:    1 MPTMVFLYRQHFRQQYAVVGNLSFWYRVGQRG 32
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5JHD2_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.310e-11
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = -3 
Query:   11 PLPSHSVPKRKIADYSILLSEVLSVQKHHGRHGTRS 118
            P  SHS+PKRKIADYSILLSEVLSV+KHHGR+GT S
Sbjct:   21 PSLSHSIPKRKIADYSILLSEVLSVKKHHGRNGTSS 56
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5JXD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.210e-11
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = -3 
Query:   11 PLPSHSVPKRKIADYSILLSEVLSVQKHHGRHGTRS 118
            P  SHS+PKRKIADYSILLSEVLSVQKHHGRHGT S
Sbjct:   21 PSLSHSIPKRKIADYSILLSEVLSVQKHHGRHGTXS 56
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5K329_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K329_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.670e-10
Identity = 30/40 (75.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 CPASFLFHAYHGVFAQTALQTAVCCSRQSFVLVQSGTGGG 120
            CPAS LFHAYHGVF QTA    VCCSRQS VL  SGTG G
Sbjct:   27 CPASCLFHAYHGVFEQTAXXXXVCCSRQSSVLALSGTGRG 66
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5JYW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.540e-8
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = -3 
Query:   32 PLPSHSVPKRKIADYSILLSEVLSVQKHH 118
            P  SHS+PKRKIADYSIL+SEVLSVQKHH
Sbjct:   21 PCLSHSIPKRKIADYSILMSEVLSVQKHH 49
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5KIL7_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.990e-7
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = -3 
Query:   14 PLPSHSVPKRKIADYSILLSEVLSVQKHHGRHGTR 118
            P  SHS+PKRKIADYSILLSEV SVQKHHG  G R
Sbjct:   21 PSLSHSIPKRKIADYSILLSEVPSVQKHHGLVGLR 55
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BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Match: A0A6H5JZL7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL7_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.680e-5
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = -3 
Query:    2 LLSEVLSVQKHHGRHGTRSWRG 67
            +LSEVLSVQKHHGRHGT SWRG
Sbjct:    1 MLSEVLSVQKHHGRHGTSSWRG 22
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71004.18193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JDD8_9PHAE6.350e-2064.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBR8_9PHAE3.180e-1668.33Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JUS8_9PHAE4.420e-1689.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX8_9PHAE2.460e-1290.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHD2_9PHAE1.310e-1183.33Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXD3_9PHAE2.210e-1188.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K329_9PHAE2.670e-1075.00Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYW7_9PHAE3.540e-886.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIL7_9PHAE1.990e-780.00Elongation factor Ts, mitochondrial n=1 Tax=Ectoca... [more]
A0A6H5JZL7_9PHAE2.680e-590.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71004contigEcto-sp13_S_contig71004:3..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size487
Hectar predicted targeting categorysignal peptide
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463974.4161346-CDS-Ecto-sp13_S_contig71004:2..3021681463974.4161346-CDS-Ecto-sp13_S_contig71004:2..302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71004 3..302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463974.4284365-UTR-Ecto-sp13_S_contig71004:302..4881681463974.4284365-UTR-Ecto-sp13_S_contig71004:302..488Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig71004 303..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71004.18193.1prot_Ecto-sp13_S_contig71004.18193.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71004 3..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71004.18193.1

>prot_Ecto-sp13_S_contig71004.18193.1 ID=prot_Ecto-sp13_S_contig71004.18193.1|Name=mRNA_Ecto-sp13_S_contig71004.18193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
CPASFLFHAYHGVFAQTALQTAVCCSRQSFVLVQSGTGGGDATVVERWDG
RAVQFFRHAYGAARILGVPLQSGSCIPFSCEMCVFFRSSDDSSTFVTTG*
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mRNA from alignment at Ecto-sp13_S_contig71004:3..488+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71004.18193.1 ID=mRNA_Ecto-sp13_S_contig71004.18193.1|Name=mRNA_Ecto-sp13_S_contig71004.18193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71004:3..488+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCCGCCAGCTTCTTGTTCCATGCCTACCATGGTGTTTTTGCACAGAC
AGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATCTTTCGTTTTGGTAC
AGAGTGGGACGGGAGGGGGTGATGCTACTGTAGTCGAACGGTGGGACGGA
CGTGCAGTTCAGTTTTTTAGGCACGCATACGGTGCTGCAAGGATTTTAGG
TGTACCTCTTCAGTCAGGCTCTTGTATACCTTTTTCTTGTGAAATGTGCG
TGTTTTTTAGATCCTCAGATGACTCTAGCACTTTCGTGACCACGGGCTGA
GAGTCTGTGCTAGAGTATGGCATTTAGCAACTGACATACGGTTTAATGTG
ACGACCACAACAACAACAACAACAATGCCCGTTGCGTGATCCTGCGCTAC
ACTACCAGGAGGCATACCAGTTTCATCCCTCGCTTTGAGCTTTGTCGGAA
GCAAACAGGGAAACGACGAGGAGAGTGAAGACAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71004:3..488+

>mRNA_Ecto-sp13_S_contig71004.18193.1 ID=mRNA_Ecto-sp13_S_contig71004.18193.1|Name=mRNA_Ecto-sp13_S_contig71004.18193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71004:3..488+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCCGCCAGCTTCTTGTTCCATGCCTACCATGGTGTTTTTGCACAGAC
AGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATCTTTCGTTTTGGTAC
AGAGTGGGACGGGAGGGGGTGATGCTACTGTAGTCGAACGGTGGGACGGA
CGTGCAGTTCAGTTTTTTAGGCACGCATACGGTGCTGCAAGGATTTTAGG
TGTACCTCTTCAGTCAGGCTCTTGTATACCTTTTTCTTGTGAAATGTGCG
TGTTTTTTAGATCCTCAGATGACTCTAGCACTTTCGTGACCACGGGCTGA
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