mRNA_Ecto-sp13_S_contig70987.18186.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70987.18186.1
Unique NamemRNA_Ecto-sp13_S_contig70987.18186.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70987.18186.1 vs. uniprot
Match: D7G8B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 9.370e-32
Identity = 69/91 (75.82%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 GGFIAIPLRFDVPGQALPARAVLQARLT----------------EGGGSGSEAIVNFGQCFVGQSVTRRVLLRNTSLLPAKFGFIGNPAEV 225
            GG IAIPLRFDVPGQALPARAVLQARLT                EGG  GSEA+VNFG CFVGQSVTRRV LRNTSLLPAKFGFIGNPAEV
Sbjct: 1008 GGIIAIPLRFDVPGQALPARAVLQARLTGSKVEVGCGDGERGEGEGGVGGSEAVVNFGPCFVGQSVTRRVSLRNTSLLPAKFGFIGNPAEV 1098
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BLAST of mRNA_Ecto-sp13_S_contig70987.18186.1 vs. uniprot
Match: A0A6H5JIE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.020e-28
Identity = 67/91 (73.63%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    1 GGFIAIPLRFDVPGQALPARAVLQARLTEGG---GSG-------------SEAIVNFGQCFVGQSVTRRVLLRNTSLLPAKFGFIGNPAEV 225
            GG IAIPLRFDVPGQALPARAVLQARLT      G G             SEA+VNFGQCFVGQSVTRRV LRNTSLL AKFGFIGNPAEV
Sbjct:  964 GGIIAIPLRFDVPGQALPARAVLQARLTGSKVEVGCGDXXXXXXXXXXXXSEAVVNFGQCFVGQSVTRRVSLRNTSLLAAKFGFIGNPAEV 1054
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BLAST of mRNA_Ecto-sp13_S_contig70987.18186.1 vs. uniprot
Match: A0A7S2APH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APH7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.820e-9
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    4 GFIAIPLRFDVPGQALPARAVLQARLTEGGGSGSEAIVNFGQCFVGQSVTRRVLLRNTSLLPAKFGFIGNPAEV 225
            G IA+P++  VP Q +P    L+A+LT G    ++  +NF  C++ +S  +R++LRN S LP KFGFI  P EV
Sbjct:  238 GVIAVPVQIFVPSQKIPIYFTLRAQLTSGELHLNKTELNFENCYITESKVKRLVLRNESALPQKFGFIQLPPEV 311
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BLAST of mRNA_Ecto-sp13_S_contig70987.18186.1 vs. uniprot
Match: UPI0015AADC0D (cilia- and flagella-associated protein 74 isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AADC0D)

HSP 1 Score: 50.4 bits (119), Expect = 3.100e-5
Identity = 29/71 (40.85%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:    4 GFIAIPLRFDVPGQALPARAVLQARLTEGGGSGSEAIVNFGQCFVGQSVTRRVLLRNTSLLPAKFGFIGNP 216
            G + +P+   V  Q  P    + A LT          V+FG C V +SV   VLLRN SLLP  FGF+G P
Sbjct:  949 GVLEVPMSVQVADQVRPVAFTVNAILTTSELEFDRTEVDFGHCSVFESVKTSVLLRNRSLLPQDFGFLGIP 1019
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70987.18186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8B1_ECTSI9.370e-3275.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIE8_9PHAE3.020e-2873.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2APH7_9STRA1.820e-943.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI0015AADC0D3.100e-540.85cilia- and flagella-associated protein 74 isoform ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70987contigEcto-sp13_S_contig70987:375..674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score126.3
Seed ortholog evalue6.6e-27
Seed eggNOG ortholog2880.D7G8B1
Preferred nameKIAA1751
Model size252
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons2
EggNOG free text desc.axoneme assembly
EggNOG OGs2CMB2@1,2QPUP@2759
Cds size252
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463973.001941-CDS-Ecto-sp13_S_contig70987:374..5411681463973.001941-CDS-Ecto-sp13_S_contig70987:374..541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70987 375..541 -
1681463973.0148277-CDS-Ecto-sp13_S_contig70987:589..6741681463973.0148277-CDS-Ecto-sp13_S_contig70987:589..674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70987 590..674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70987.18186.1prot_Ecto-sp13_S_contig70987.18186.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70987 375..674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70987.18186.1

>prot_Ecto-sp13_S_contig70987.18186.1 ID=prot_Ecto-sp13_S_contig70987.18186.1|Name=mRNA_Ecto-sp13_S_contig70987.18186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
GGFIAIPLRFDVPGQALPARAVLQARLTEGGGSGSEAIVNFGQCFVGQSV
TRRVLLRNTSLLPAKFGFIGNPAEVIKESKEFD*
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mRNA from alignment at Ecto-sp13_S_contig70987:375..674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70987.18186.1 ID=mRNA_Ecto-sp13_S_contig70987.18186.1|Name=mRNA_Ecto-sp13_S_contig70987.18186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70987:375..674- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCTTTATCGCCATCCCCTTGAGATTTGACGTGCCCGGACAGGCGCT
ACCTGCCAGGGCTGTGCTGCAGGCTAGGCTGACGGGTTCCAAGGTGGAAG
TGGGTTGCGGAGACGGAGAGCGCGGAGAGGGAGAGGGCGGGGGTAGTGGG
AGTGAAGCCATTGTTAACTTCGGGCAGTGCTTCGTGGGGCAGAGCGTAAC
AAGGAGAGTGTTGCTGCGGAACACCAGCCTTCTTCCGGCGAAATTTGGCT
TCATTGGCAACCCGGCCGAGGTGATCAAAGAAAGCAAGGAGTTTGATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70987:375..674-

>mRNA_Ecto-sp13_S_contig70987.18186.1 ID=mRNA_Ecto-sp13_S_contig70987.18186.1|Name=mRNA_Ecto-sp13_S_contig70987.18186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70987:375..674- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCTTTATCGCCATCCCCTTGAGATTTGACGTGCCCGGACAGGCGCT
ACCTGCCAGGGCTGTGCTGCAGGCTAGGCTGACGGAGGGCGGGGGTAGTG
GGAGTGAAGCCATTGTTAACTTCGGGCAGTGCTTCGTGGGGCAGAGCGTA
ACAAGGAGAGTGTTGCTGCGGAACACCAGCCTTCTTCCGGCGAAATTTGG
CTTCATTGGCAACCCGGCCGAGGTGATCAAAGAAAGCAAGGAGTTTGATT
AG
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