mRNA_Ecto-sp13_S_contig70968.18185.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig70968.18185.1
Unique Name	mRNA_Ecto-sp13_S_contig70968.18185.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.810e-29
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH TTSHSDEE
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEE 153

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5K055_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K055_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.010e-29
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATT SDI+CHSCYEPGHIRRNCPKIKNRAK+KT+PAGATKWCSKH TTSHSDEE
Sbjct:    1 MATTTSDIMCHSCYEPGHIRRNCPKIKNRAKQKTRPAGATKWCSKHYTTSHSDEE 55

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5K783_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K783_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.040e-28
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWC KH TTSHSDEE
Sbjct:  108 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCFKHNTTSHSDEE 162

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.370e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH TTSHSDEE
Sbjct:  236 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEE 290

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5LLS9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.150e-28
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAG TKWCSKH TTSHSDEE
Sbjct:  122 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGGTKWCSKHNTTSHSDEE 176

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.730e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH TTSHSDEE
Sbjct:   47 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEE 101

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.460e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH TTSHSDEE
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEE 153

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 9.020e-28
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWC KH TTSHSDEE
Sbjct:  195 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEE 249

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.820e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH TTSHSDEE
Sbjct:  254 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEE 308

[Close]

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.000e-27
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH-TTSHSDEE 162
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKH TTSHSDEE
Sbjct:   29 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEE 83

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig70968.18185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZM5_9PHAE	5.810e-29	98.18	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K055_9PHAE	7.010e-29	90.91	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K783_9PHAE	1.040e-28	96.36	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JF66_9PHAE	1.370e-28	98.18	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5LLS9_9PHAE	2.150e-28	96.36	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KP59_9PHAE	2.730e-28	98.18	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JZ53_9PHAE	6.460e-28	98.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXR7_9PHAE	9.020e-28	96.36	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L580_9PHAE	9.820e-28	98.18	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KMG5_9PHAE	1.000e-27	98.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig70968	contig	Ecto-sp13_S_contig70968:347..508 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	162
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Cds size	162

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463972.9708388-CDS-Ecto-sp13_S_contig70968:346..508	1681463972.9708388-CDS-Ecto-sp13_S_contig70968:346..508	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig70968 347..508 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig70968.18185.1	prot_Ecto-sp13_S_contig70968.18185.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig70968 347..508 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig70968:347..508+
coding sequence from alignment at Ecto-sp13_S_contig70968:347..508+

protein sequence of mRNA_Ecto-sp13_S_contig70968.18185.1

>prot_Ecto-sp13_S_contig70968.18185.1 ID=prot_Ecto-sp13_S_contig70968.18185.1|Name=mRNA_Ecto-sp13_S_contig70968.18185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHTTSH
SDEE

mRNA from alignment at Ecto-sp13_S_contig70968:347..508+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig70968.18185.1 ID=mRNA_Ecto-sp13_S_contig70968.18185.1|Name=mRNA_Ecto-sp13_S_contig70968.18185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70968:347..508+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGG
GCACATCAGGAGGAACTGCCCCAAGATTAAGAACAGGGCGAAGAAGAAAA
CGAAGCCCGCCGGAGCTACCAAGTGGTGCTCCAAGCACACCACGTCTCAC
TCGGACGAGGAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70968:347..508+

>mRNA_Ecto-sp13_S_contig70968.18185.1 ID=mRNA_Ecto-sp13_S_contig70968.18185.1|Name=mRNA_Ecto-sp13_S_contig70968.18185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70968:347..508+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGG
GCACATCAGGAGGAACTGCCCCAAGATTAAGAACAGGGCGAAGAAGAAAA
CGAAGCCCGCCGGAGCTACCAAGTGGTGCTCCAAGCACACCACGTCTCAC
TCGGACGAGGAA