mRNA_Ecto-sp13_S_contig70959.18183.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70959.18183.1
Unique NamemRNA_Ecto-sp13_S_contig70959.18183.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: D7FSG2_ECTSI (WD-repeat protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG2_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.390e-61
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPT GQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV
Sbjct:  151 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTTGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 254
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A091N3D6_9PASS (DNA excision repair protein ERCC-8 (Fragment) n=2 Tax=Acanthisitta chloris TaxID=57068 RepID=A0A091N3D6_9PASS)

HSP 1 Score: 117 bits (293), Expect = 2.980e-29
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YP DTG+F S + D  +KVWDTNTL +   F F++ VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH +AV A +WSPR EF+LATGSAD  V
Sbjct:   83 YPHDTGMFTSSSFDKTLKVWDTNTLQLADTFHFQETVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSSSHILQGHRQAVLAVSWSPRHEFILATGSADGKV 186
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A8B9FYU3_9PSIT (ERCC excision repair 8, CSA ubiquitin ligase complex subunit n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9FYU3_9PSIT)

HSP 1 Score: 116 bits (291), Expect = 5.410e-29
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YP DTG+F S + D  +K+WDTNTL     F FK  VYS  MSP    H L+AVG+ SP+ +LCD++SG+F+H L GH + V A AWSPR E++LATGSAD  V
Sbjct:   50 YPHDTGMFTSSSFDKTLKIWDTNTLKSADAFHFKGTVYSHHMSPVATNHCLVAVGTKSPKVQLCDLKSGSFSHILQGHRQEVLAVAWSPRHEYVLATGSADGRV 153
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: UPI0010A8561E (DNA excision repair protein ERCC-8 isoform X2 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A8561E)

HSP 1 Score: 116 bits (290), Expect = 7.920e-29
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YP DTG+F S + D  +K+WDTNTL    EF F+  VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH + + A +WSPRSE++LATGSAD  V
Sbjct:   80 YPHDTGIFTSSSFDKTLKIWDTNTLQPADEFHFEGTVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRSEYILATGSADSRV 183
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A0Q3PY90_AMAAE (DNA excision repair protein ERCC-8 n=7 Tax=Psittaciformes TaxID=9223 RepID=A0A0Q3PY90_AMAAE)

HSP 1 Score: 116 bits (291), Expect = 8.360e-29
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YP DTG+F S + D  +K+WDTNTL     F FK  VYS  MSP    H L+AVG+ SP+ +LCD++SG+F+H L GH + V A AWSPR E++LATGSAD  V
Sbjct:  108 YPHDTGMFTSSSFDKTLKIWDTNTLKSADAFHFKGTVYSHHMSPVATNHCLVAVGTKSPKVQLCDLKSGSFSHILQGHRQEVLAVAWSPRHEYVLATGSADGRV 211
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: Q0JHK7_ORYSJ (Os01g0857900 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0JHK7_ORYSJ)

HSP 1 Score: 110 bits (276), Expect = 1.040e-28
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YPVDTGLFV+ + D  VKVWDTN+  VV++F    KVYSA+MSP    H LIA GS   Q  LCDI SGAF H LSGH + + +  WS  SE++L +G  D  +
Sbjct:    5 YPVDTGLFVTASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVHLCDIASGAFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAI 108
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A453FYU7_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FYU7_AEGTS)

HSP 1 Score: 113 bits (283), Expect = 1.260e-28
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YPVDTGLFV+ + D  VKVWDTN+  VV++F    KVYSA+MSP    H LIA GS   Q RLCDI SGAF H LSGH + + +  WS  SE++L +G  D  +
Sbjct:  104 YPVDTGLFVTASFDNYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVRLCDIASGAFTHTLSGHHDGIMSLEWSTSSEWILMSGGCDGAI 207
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A2P2LJE2_RHIMU (WD-repeat protein n=3 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LJE2_RHIMU)

HSP 1 Score: 113 bits (283), Expect = 1.730e-28
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YP+DTGLFV+G+ D  VK+WDTNT  +V+ F    KVY  +MSP    H LIA G++  Q RLCDI SGAF+H LSGH + V +  WS  SE++L TG  D  +
Sbjct:  112 YPIDTGLFVTGSYDHTVKIWDTNTTQMVMNFKLPGKVYKTAMSPLSTSHMLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLVTGGCDGAI 215
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A6I8NHV3_ORNAN (ERCC excision repair 8, CSA ubiquitin ligase complex subunit n=5 Tax=Monotremata TaxID=9255 RepID=A0A6I8NHV3_ORNAN)

HSP 1 Score: 116 bits (290), Expect = 1.880e-28
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YP DTG+F S + D  +K+WDTNTL    EF F+  VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH + + A +WSPRSE++LATGSAD  V
Sbjct:  146 YPHDTGIFTSSSFDKTLKIWDTNTLQPADEFHFEGTVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRSEYILATGSADSRV 249
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BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A7K8W6D5_9FURN (ERCC8 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7K8W6D5_9FURN)

HSP 1 Score: 112 bits (281), Expect = 2.150e-28
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   22 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 333
            YP DTG+F S + D  +K+WDTNTL     F F+  VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH +AV A +WSPR E++LATGSAD  V
Sbjct:   83 YPHDTGMFTSSSFDKTLKIWDTNTLQPADIFHFEGTVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSSSHILQGHRQAVLAVSWSPRHEYVLATGSADGKV 186
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSG2_ECTSI2.390e-6199.04WD-repeat protein, putative n=2 Tax=Ectocarpus Tax... [more]
A0A091N3D6_9PASS2.980e-2955.77DNA excision repair protein ERCC-8 (Fragment) n=2 ... [more]
A0A8B9FYU3_9PSIT5.410e-2954.81ERCC excision repair 8, CSA ubiquitin ligase compl... [more]
UPI0010A8561E7.920e-2953.85DNA excision repair protein ERCC-8 isoform X2 n=1 ... [more]
A0A0Q3PY90_AMAAE8.360e-2954.81DNA excision repair protein ERCC-8 n=7 Tax=Psittac... [more]
Q0JHK7_ORYSJ1.040e-2852.88Os01g0857900 protein n=1 Tax=Oryza sativa subsp. j... [more]
A0A453FYU7_AEGTS1.260e-2853.85Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A2P2LJE2_RHIMU1.730e-2851.92WD-repeat protein n=3 Tax=Rhizophora mucronata Tax... [more]
A0A6I8NHV3_ORNAN1.880e-2853.85ERCC excision repair 8, CSA ubiquitin ligase compl... [more]
A0A7K8W6D5_9FURN2.150e-2853.85ERCC8 protein (Fragment) n=4 Tax=Neognathae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70959contigEcto-sp13_S_contig70959:19..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score208.4
Seed ortholog evalue1.8e-51
Seed eggNOG ortholog2880.D7FSG2
Preferred nameERCC8
Model size339
KEGG koko:K10570,ko:K14538
KEGG Pathwayko03008,ko03420,ko04120,map03008,map03420,map04120
KEGG ModuleM00386
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000151,GO:0000209,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010498,GO:0010604,GO:0016363,GO:0016567,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031325,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0033554,GO:0034399,GO:0034641,GO:0036211,GO:0036477,GO:0043025,GO:0043161,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0045739,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051603,GO:0051716,GO:0051865,GO:0060255,GO:0065007,GO:0070013,GO:0070647,GO:0070912,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097458,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234,GO:1990391,GO:2001020,GO:2001022
Exons2
EggNOG free text desc.transcription-coupled nucleotide-excision repair
EggNOG OGsKOG4283@1,KOG4283@2759
Cds size339
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.8453534-CDS-Ecto-sp13_S_contig70959:18..2281681463972.8453534-CDS-Ecto-sp13_S_contig70959:18..228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70959 19..228 -
1681463972.8602638-CDS-Ecto-sp13_S_contig70959:502..6311681463972.8602638-CDS-Ecto-sp13_S_contig70959:502..631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70959 503..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70959.18183.1prot_Ecto-sp13_S_contig70959.18183.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70959 19..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70959.18183.1

>prot_Ecto-sp13_S_contig70959.18183.1 ID=prot_Ecto-sp13_S_contig70959.18183.1|Name=mRNA_Ecto-sp13_S_contig70959.18183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
GLKLSERYPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMS
PTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEF
LLATGSADQTVGV
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mRNA from alignment at Ecto-sp13_S_contig70959:19..631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70959.18183.1 ID=mRNA_Ecto-sp13_S_contig70959.18183.1|Name=mRNA_Ecto-sp13_S_contig70959.18183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=613bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70959:19..631- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTGAAACTCTCTGAAAGGTACCCGGTGGACACCGGCCTGTTCGTGTC
CGGAGCGATGGACGGGGTCGTGAAGGTGTGGGACACCAACACTCTCGGCG
TCGTGCTGGAGTTCGATTTCAAGGATAAGGTGCGAGAGCGACGAGACAAC
CTACGGTGACGTGAGATACCACACCCCCTAGACCGATTTTCAAAACGCGA
TGTTGTCTCCAAATTAAGAAACCGTTCCGATCTCTCTGCACAGCAGTACC
TTCATCTGTCCGTACTAGTCGAACACTTGACGCTGTCGACTCCCGCGGTC
ACAGGCAATTTTGCCTTAAAAAAGGTCTACCCAAAAACAATGGACCCGAA
GGATAATTATGCAGGTGCTATTTGAAATCGGGTCATGAACATCTCTTGAA
CAGGTCTACTCCGCGTCGATGTCGCCCACCATCGGGCAGCACCACCTCAT
CGCCGTAGGGAGCGATAGTCCTCAGGCGCGCTTGTGCGACATCCGCTCGG
GCGCCTTTGCGCATGCTCTGTCTGGGCACTCGGAAGCGGTTTCGGCGTGC
GCTTGGTCCCCGAGGTCGGAGTTTCTTCTGGCTACGGGGTCGGCCGATCA
AACGGTAGGCGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70959:19..631-

>mRNA_Ecto-sp13_S_contig70959.18183.1 ID=mRNA_Ecto-sp13_S_contig70959.18183.1|Name=mRNA_Ecto-sp13_S_contig70959.18183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70959:19..631- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTGAAACTCTCTGAAAGGTACCCGGTGGACACCGGCCTGTTCGTGTC
CGGAGCGATGGACGGGGTCGTGAAGGTGTGGGACACCAACACTCTCGGCG
TCGTGCTGGAGTTCGATTTCAAGGATAAGGTCTACTCCGCGTCGATGTCG
CCCACCATCGGGCAGCACCACCTCATCGCCGTAGGGAGCGATAGTCCTCA
GGCGCGCTTGTGCGACATCCGCTCGGGCGCCTTTGCGCATGCTCTGTCTG
GGCACTCGGAAGCGGTTTCGGCGTGCGCTTGGTCCCCGAGGTCGGAGTTT
CTTCTGGCTACGGGGTCGGCCGATCAAACGGTAGGCGTA
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