mRNA_Ecto-sp13_S_contig7095.18182.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7095.18182.1
Unique NamemRNA_Ecto-sp13_S_contig7095.18182.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: D7G930_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G930_ECTSI)

HSP 1 Score: 897 bits (2318), Expect = 0.000e+0
Identity = 511/538 (94.98%), Postives = 514/538 (95.54%), Query Frame = 1
Query:    1 AGMWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGENSEQLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDGDXXXXXXXXXXADEAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTV 1614
            AGMWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPL QIEAFRETSELAATPWLYLGENSEQ GPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELR LLQDGDXXXXXXXXX  D+APEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDE XXXXXXXXXX PWKIRRAKQQAKLKAKSKED KAN DA AGQKG T           PDTAHWGELLEDAKREAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMF PSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVV+KFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT+
Sbjct:   64 AGMWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLAQIEAFRETSELAATPWLYLGENSEQRGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRPLLQDGDXXXXXXXXXGTDDAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEXXXXXXXXXXXXPWKIRRAKQQAKLKAKSKEDKKANRDAAAGQKGXTXXXXXXXXXXXPDTAHWGELLEDAKREAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFHPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVVKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTI 601          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: A0A835ZDG4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG4_9STRA)

HSP 1 Score: 352 bits (902), Expect = 8.940e-111
Identity = 255/577 (44.19%), Postives = 334/577 (57.89%), Query Frame = 1
Query:    7 MWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATP---WLYLGENSEQLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLL--------QDGDXXXXXXXXXXADE---APE--------KMMVFEADDEAQPAYEPPPKK-----------ESKRSFMADDGTKFAWDEEKGDWKEV----EGDEEXXXXXXXXXXEP-WKIRRAKQQAKLKA---KSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTV 1614
            MW Y+ G    + GPL    M++LL+ G  H   + W++G  EWQPL  +E F++  ++AA     W Y+      +GP+ A  L +  ++G +DGMT+ W   M DW P+ E+  L+ LL        ++GD       XX   +   AP+          MVF  + E QPA +    +           E K+SF+ D G ++ WD E+ DW E     EGD  XXXXXXXXXX P WKI+  K++   KA   K+K D KA                                   AKRE +         XXXXXXXXXXXXXXXXXXXXXXXXXX    W+ + +  WVY++GLP DI  EE+R+HF+K G+IATDP++Q P+IKIY+DD G  KGDGSVCY   ESVE+A++VL   Q+R G    V+   F+    SF   K       R  VARAAA+QALSW E+DD G  KGGLKIVV+ENMF PSDF  +  FGE+L+AD+  E +KLGP+EKITVF++N  GPVV+KFGTA+A+ +C+K  DGR+FG RKL CH+WDG+TNY V
Sbjct:   55 MWFYV-GPEGQRLGPLPCKAMVELLKKGKLHPSALGWTEGQGEWQPLANLEPFKDAVQVAAAAAGQWSYIDHAGATIGPMGAKELIKAFQEGALDGMTLVWAVNMTDWLPMAELPGLKELLMSAEEEENENGDSAQPESAXXAQQQGVQAPQPAVAGVDANAMVFAFEPEEQPALDAEASEALAKARKARGEEGKKSFVTDAGVRYVWDAEENDWVEAGSEDEGDXXXXXXXXXXXXXPLWKIKLKKKREAQKAALIKAKADKKA-----------------------------------AKREGKAGVEGEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXNT-WSAEGSGRWVYIQGLPADITEEEMRDHFAKAGVIATDPISQAPRIKIYRDDTGGCKGDGSVCYVMEESVELALHVLDGSQIRAGGKHSVN---FKSYFNSFLGLK----PTIRFTVARAAAKQALSWNESDDIGVAKGGLKIVVIENMFDPSDFVEDPDFGEDLQADIALECQKLGPLEKITVFSRNPIGPVVVKFGTAFASEQCIKKMDGRWFGKRKLRCHYWDGITNYEV 587          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: A0A4D9D5D1_9STRA (RRM domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D1_9STRA)

HSP 1 Score: 308 bits (789), Expect = 2.220e-94
Identity = 198/568 (34.86%), Postives = 296/568 (52.11%), Query Frame = 1
Query:    7 MWMYLDGANPTQHGPLTESLMLKLL--RIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGENSEQLGPVSAAALSRLLRQGEVDGMTMAWTTGM-GDWKPLGEVSELRSLL----------------QDGDXXXXXXXXXXADE--APEKMMVFEADDEA--QPAYEPPPKKES----KRSFMADDGTKFAWDEEKGDWKEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSF------DNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            +W YL  +   + GP  ES ++++L  ++         W+ GM EW+P+GQ+  F    E  +  W YL +N +Q GP     ++ LL  GEVDG+++ W   + G W+PL EV ELR LL                QD +          AD     ++  VF+A++      A     KK      K+S++ADDGTK+  + +  +W+EV  D+E                    + +++  +KE N   S     Q+    ++   G             +E  KR+ +                                   RG +   +A+N WVY+ GLP D   EE+  HF + GI+A DP TQ+P+IK+Y+D  G PKGD SV + + ESVE+A+ +L+EG LRPG  + ++KAVF QK  +       +  K+ ++N+A+ KVARAAA+QALSW+E DD+G     L+IV+V+NMF PSD E+ E F E+L  DL  E   LGP+EK+T+F ++ +G +V+KFGTA+AA +CVK+ +GRFF GRKL   +WDG T+YT
Sbjct:   12 VWNYLAPSGDKK-GPFPESTLIRMLVKKLPGLDTSSFCWTPGMEEWRPIGQMTNFSSVLEAESAAWYYLDKNGQQQGPTDVKNVADLLHGGEVDGLSLVWHQDLAGGWRPLSEVDELRQLLRLFMPSELGEEESDKVQDVEPGSSAKAGGGADLNLTMDERQVFQAEEMPGMSMAVTSTNKKTDDGGVKQSYVADDGTKYRLNIDTNEWEEVASDDES-------------------EDEIEKGNKEGNDEPS-----QQNCAASSTEYG------------TVERRKRKKKN----------------------------------RGGEGWDRASNKWVYITGLPTDATAEELEAHFKQVGILAIDPETQRPRIKMYRDPSGAPKGDASVAFVRPESVELAVEILNEGMLRPGWPLNITKAVFHQKTSTAGEKSKTEPVKKRRLNEAKAKVARAAAKQALSWSEADDSGLGGKALRIVIVKNMFEPSDCESAE-FIEDLRKDLEVECSALGPLEKMTIFERHPEGVIVLKFGTAFAAEQCVKLMNGRFFAGRKLQSFYWDGSTDYT 507          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: A0A6A4FII1_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FII1_9STRA)

HSP 1 Score: 297 bits (760), Expect = 6.550e-90
Identity = 205/547 (37.48%), Postives = 290/547 (53.02%), Query Frame = 1
Query:    1 AGMWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGENSE-------QLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDG--DXXXXXXXXXXADEAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDE-GHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            A  W+YLD A   Q GP+   ++ +LLR G      +AW+Q +SEW  L  +E F     + A+ W Y+ EN+        + GPV+   L  L   GEVDGMT+ W+  +  WKP+GEV  L+  LQ+   D          A E P +  VFE              KE+  + +A+DG K+ +D E   +   E                 KI       +  A + +D K  ++   G+   T +      ++  ++A   E+   A    E         XXXXXXXXXXXXXX               +W K   N WVYV GLP+DI V+EV +HF+KCG+I +D +T +P+IK+Y+D E G   GD SVCY K  SVE+A+ +L + Q+RP   I+VS A F+QKGQ F   K+ K+ D R K+      +ALSW  N+   +   GL+IVV+++MF P + E +E + +EL+ D+  E  K+G V KIT+FAK+  G VVIKF ++ +A+ CV+V +GRFF GRKL C FWDG TNYT
Sbjct:    6 AERWLYLDAATGQQKGPVASPILKRLLRKGIVKPQQLAWTQRLSEWTALASVEPFAAYCRVWASAWFYMAENATDPSQSAVRTGPVTTQQLVALFVDGEVDGMTLVWSQELDGWKPIGEVPSLKEFLQEANDDMDRETELQEQATEVPVEHQVFE--------------KEATEALVAEDGKKYVFDAESKTYVTPED----------------KIEEELASLQEAAMAGDDKKEEANPPIGKANSTKS------ENGGESARKDEVPSAASMATETKPADQTEAXXXXXXXXXXXXXXSD-------------KWKKSKVNTWVYVNGLPLDITVQEVHDHFAKCGVIQSDIVTGEPRIKVYQDKESGGLNGDCSVCYMKEASVELAVQLLDKSQIRPEWPIDVSPAQFKQKGQDFVKRKKPKI-DTRAKIKMFEKAKALSW--NEGEVSEPAGLRIVVIKHMFTPEEIE-DEEYEKELQDDIQDECSKIGEVSKITLFAKHVDGVVVIKFASSGSAARCVEVMNGRFFAGRKLECGFWDG-TNYT 498          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: A0A8K1CI44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI44_PYTOL)

HSP 1 Score: 293 bits (749), Expect = 1.740e-88
Identity = 191/552 (34.60%), Postives = 280/552 (50.72%), Query Frame = 1
Query:   10 WMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGE--NSEQLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDG--DXXXXXXXXXXADEAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDW----KEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHW---------GELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKD-DEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            WMY+D A   Q GPL E+++ +L+R G        W+Q ++EWQ +  +  F     +    W Y+ +   S Q GPVS   L  L   G++DG+TM W+  + +WKP+GEV  L+  L +   D           D+  ++  VFE              K+S  +F+A+DG ++ +D E   W    +++E D E              +R A  +     K+    K      +     T A   A   D+ +T            GE     KR+ + XX                                +  +W K   N WVYV GLP+D+ VEEVR+HF++CG+I TD  T  P+IK+YK+ D G   GD SVCY K  SVE+A+ +L +  +RP   I+VS AVF+QKG++F   K+ ++ DAR KV R   E+ALSW E +D    + GL+IVV+++MF P +   ++ + EEL  D+  E  K+G V K+T+FAK+  G VVIKF +  +A++CV V +GRFF GRKL CHFWDG  +YT
Sbjct:    8 WMYVDAATGQQRGPLPETIVKRLIRRGLLAPAQFVWTQRLTEWQAVSTVAPFDAYCRVWFAMWYYIPDASTSAQQGPVSTKDLIALFLDGDIDGLTMVWSKEVDEWKPIGEVPSLKEFLYEANEDQDRETEALEAQDQVAQEDQVFE--------------KDSADAFVAEDGKQYVFDTETKKWVTPQQKIEDDLEA-------------LREAAGELDTNGKNDTRPKTRVLPPSAPAVPTEATALAAAQDELNTVENAAATTTGANGEAAPTLKRKKKNXX--------------------------------KSDKWKKSKVNTWVYVNGLPLDVTVEEVRDHFARCGVIQTDLATGAPRIKLYKNKDYGGLNGDASVCYMKDASVELAVELLDKSHIRPEWPIDVSPAVFEQKGETFVKHKKARL-DARAKVKRIEQEKALSWNEGED--GDRAGLRIVVIKHMFTPEEI-LDDTYEEELRQDIEEECTKIGEVTKVTLFAKHVDGVVVIKFASGGSAAKCVDVMNGRFFAGRKLECHFWDGA-DYT 495          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: W2R9V7_PHYPN (RRM domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2R9V7_PHYPN)

HSP 1 Score: 288 bits (737), Expect = 1.170e-86
Identity = 197/547 (36.01%), Postives = 286/547 (52.29%), Query Frame = 1
Query:    1 AGMWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGEN-------SEQLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDG--DXXXXXXXXXXADEAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDEGHP-KGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            A +W+YLD     Q GP++  ++ KLLR G      + W+Q +SEW  +  +E F     +    W Y+ E+       S + GP +   L +L   GEVDGMT+ W+  +  WKP+GEV  L+  LQ+   D          A   P +  VFE              KES  + +A+DG ++ +D E    K     E+          E  +   A++Q     ++K +N  ++D      G+  A  A   D              ++ +AEXXXXXXXXXXXX                          +W K   N WVYV GLP+D+ V+EV +HF+KCG+I  D  T +P+IK+Y++ E     GDGSVCY K  SVE+A+ +L + Q+RP   I+VS AVFQQK   F   K+LK+ D+R ++     E+ALSW E +       GL+IVV+++MF P++ E +E +  EL+ D+  E  K+G V KIT+FAK+  G VVIKF ++ +A+ CV++ +GRFF GRKL C FWDG T+YT
Sbjct:    3 AELWLYLDAVTGQQKGPVSAPIIKKLLRKGVIQPQQLVWTQRLSEWTAIASVEPFESYLRVWTAVWYYMAEDPTNPSKESVRTGPNTTQQLVQLFVDGEVDGMTLVWSQQLDGWKPIGEVPSLKEFLQEANEDLDREAELKEQASNVPIEQQVFE--------------KESTDALVAEDGKRYVFDAES---KTYVTPEDKIEEELASLQEAMREANAEKQGGNNNENKSENPRSTDNQKVSIGEEAAGKAKPADQ-------------SEADAEXXXXXXXXXXXXND------------------------KWKKSKKNTWVYVNGLPLDVTVQEVHDHFAKCGVIQPDIATGKPRIKLYQNKESDGLNGDGSVCYMKEASVELAVQLLDKSQIRPDWPIDVSPAVFQQKEGDFVKRKKLKI-DSRARIKMFEKEKALSWNEGEVN--EPAGLRIVVIKHMFTPAEIE-DEAYETELQEDIHGECSKIGEVTKITLFAKHVDGVVVIKFASSGSAARCVEIMNGRFFAGRKLECGFWDG-TDYT 490          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: A0A329T206_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T206_9STRA)

HSP 1 Score: 286 bits (732), Expect = 6.890e-86
Identity = 199/547 (36.38%), Postives = 291/547 (53.20%), Query Frame = 1
Query:    1 AGMWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGEN-------SEQLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDG--DXXXXXXXXXXADEAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDE-GHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            A +W+YLD A   Q GP+   ++ KLLR G      + W+Q ++EW  +  +E F     +    W Y+ E+       + + GPV+   L +L   GEVDGMT+ W+  +  WKP+GEV  L+  LQ+   D            E P +  VFE              KES  + +A+DG ++ +D E   +   E   E          E   ++ + Q+  + A+ +  N+       G+  D    V AG     DT    +  + ++ +AE XXXXXXXXXXX                          +W K   N WVYV GLP+D+ V+EV +HF+KCG+I  D  T +P+IK+Y++ E G   GDGSVCY K  SVE+A+ +L + Q+RP   I+VS AVFQQK   F   K+LKV D+R K+     E+ALSW E +       GL+IVV+++MF P++ E +E + +EL+ D+  E  K+G V KIT+FAK+  G VVIKF ++ +A+ CV++ +GRFF GRKL C FWDG T+Y+
Sbjct:    3 AELWLYLDAATGQQKGPVPAPIVKKLLRKGIVQPQQLIWTQRLTEWTAVASVEPFAAYCRVWTAIWYYMAEDPTDPSKEATRTGPVTTQQLMQLFVDGEVDGMTLVWSQALDGWKPIGEVPSLKEFLQEANDDLDREAELNEQTSEVPIEHQVFE--------------KESTDALVAEDGKRYVFDAESKTYVTPEDKIEE---------ELASLQESMQE--VNAEKQGGNEXXXXXXXGKNTDK-EKVPAG----EDTLAIAKPTDQSEADAEAXXXXXXXXXXXSD------------------------KWKKSKKNTWVYVNGLPLDVTVQEVHDHFAKCGVIQLDIATGEPRIKLYQNKENGGLNGDGSVCYMKEASVELAVQLLDKSQIRPEWPIDVSPAVFQQKDGDFVKRKKLKV-DSRAKIKMFEKEKALSWNEGEVN--EPAGLRIVVIKHMFTPAEIE-DEAYEKELQEDIHDECSKVGEVSKITLFAKHVDGVVVIKFASSGSAARCVEIMNGRFFAGRKLECGFWDG-TDYS 490          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: K3WEI1_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEI1_GLOUD)

HSP 1 Score: 282 bits (722), Expect = 3.510e-84
Identity = 207/545 (37.98%), Postives = 292/545 (53.58%), Query Frame = 1
Query:    7 MWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGEN-------SEQLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDGDXXXXXXXXXXADEAPEKMMVFEADDEAQPAYEPPPKKESK-RSFMADDGTKFAWDEEKGDWKEVEGD-EEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDE-GHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            +W+Y+D A   Q GPL  +++ +LLR G        W+Q +SEWQPL Q++AF          W Y+ ++       ++Q GPV+   L  L   GE+DGMT+ W+  M +W  + EV  L+  L + +           D+A E+ ++   + ++Q A E    K+ K  +F+A+DG ++ +D E   W   E   EE          E  +     Q+ K K                         AA   D+ ++A                             XXXXXXXXXXXXXXXXXXXX    W +     WVYV GLP+DI V+EV +HF+KCG+I  D +T  P+IK+Y++ E G   GDGSVCY K  SVE+AI +L + ++RP   I+VS AVF+QKG  F   K+LK+ D+R KV +   E+ALSW E  D    K GL+IVV+++MF P + E +E +  EL  D+LAE  K+G V KIT+F+K+  G VV+KF +  AA+ C+ V +GRFF GRKL C FWDG T+YT
Sbjct:    9 LWLYVDAATGQQKGPLAGAILKRLLRKGLLQPQQFVWTQRLSEWQPLAQVDAFAAYCATWCALWYYMVDDLDAGPSATKQAGPVATKELVALFLDGEIDGMTLVWSKDMAEWSSISEVPSLKEFLHEANE----------DQAREEEVL---EKQSQVAVEDQVFKDEKVEAFVAEDGKQYIFDTEGKKWVTPEDKIEEDLQALREAAGESKEDHEVAQEVKQKXXXXXXXXXXXXXXXXXXXXXXXXTAAA--DNGESAKXXXXX-----------------------XXXXXXXXXXXXXXXXXXXXXXXXWQRSKNKTWVYVNGLPLDITVQEVHDHFAKCGVIQQDLVTSTPRIKLYENKEFGGLNGDGSVCYMKEASVELAIQLLDKSEIRPEWPIDVSPAVFEQKGSEFVKRKKLKL-DSRAKVKKIEQEKALSWNEGGD--GDKNGLRIVVIKHMFTPEEIE-DEAYENELRDDILAECLKIGEVTKITLFSKHADGVVVVKFESTGAAATCLDVMNGRFFAGRKLECSFWDG-TDYT 510          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: A0A2D4BYB9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYB9_PYTIN)

HSP 1 Score: 277 bits (709), Expect = 7.350e-83
Identity = 194/539 (35.99%), Postives = 284/539 (52.69%), Query Frame = 1
Query:    7 MWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLY-LGENSEQLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDG--DXXXXXXXXXXADEAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDE-GHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            +WMY+D A+  Q GPL   L+ +L+R G      + W+Q ++EW P G  E F     +  T W Y L  N  Q GPV+   L  L   GE+DG+T+ WT  M  W P+GE+  L+  + +   D            +A ++  VF  DD                +++  D  K+   EEK     +  D E              +R  K  A+   +S E  +    A A       A  A  GD  P T    E    A+ +A+    XXXXXXXXX                       G +W K  +N WVYV GLP+D+ +EEVR+HF+KCG+I TD +T  P+IK+Y++   G  KGD SVC+ K  SVE+A+ +L + Q+RP  TI+VS AVF+QKG  +   K+ ++ D+R +V R   E+ALSW E DD    + GL+IVV++++F P + E ++ +  EL+ ++  E  K+G + KIT+F+K+  G VV+KF +A +A++C++V +GRFF GRKL  HFWDG T+YT
Sbjct:   16 LWMYVDPASGQQRGPLPVRLLKRLIRKGHVTPQHLVWTQRLNEWTPAGTTEPFESYCRVWFTFWYYMLDGNPTQQGPVNTKDLMALFLDGEIDGLTLVWTKDMEQWTPMGELPSLKEFVHEANEDHERQEEVLEQQRQAAQEDQVF--DD----------------AYVLLDTKKWITPEEK-----IAEDLEA-------------LRDEKLAARQSDESPELAELQKLAGASPVATQTATAAQAGDXXPTTKKASEANMAAEDQAKADKKXXXXXXXXX-----------------------GERWQKAKSNTWVYVNGLPLDVTLEEVRDHFAKCGVIQTDLVTGAPRIKLYRNKNLGGLKGDASVCFMKEASVELAVQLLDKSQIRPEWTIDVSPAVFEQKGAEYVKHKKPRL-DSRARVKRLEQEKALSWNEGDD--GDRAGLRIVVIKHLFTPEEIE-DDAYELELKQEIEEECSKMGEITKITLFSKHVDGVVVVKFASAGSAAKCMEVMNGRFFAGRKLESHFWDG-TDYT 490          
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Match: A0A484DSV3_BRELC (RRM domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSV3_BRELC)

HSP 1 Score: 275 bits (704), Expect = 2.950e-82
Identity = 187/546 (34.25%), Postives = 267/546 (48.90%), Query Frame = 1
Query:    7 MWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQIEAFRETSELAATPWLYLGENSE-------QLGPVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEVSELRSLLQDGDXXXXXXXXXXAD--EAPEKMMVFEADDEAQPAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEEXXXXXXXXXXEPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDTAHWGELLEDAKREAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDE-GHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDNTKRLKVN-DARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 1611
            +WMYLD A   Q GP+   ++ KLLR        + W+Q +SEW  +  +E F        T W Y+ EN+        + GP +   L +L   G+VDGMT+ W+  + DWKP+G VS LR    + +                P +  VFE                S  + +A+DG  + +D E   +   E   E          E   +R A  +   K + + ++          K DTG  V A       T    +  E AK +            XX                          +W  K TN WVYV GLP+D+ +EEV +HF+KCG+I  D  T +P+IK+Y+D E G   GDGSVCY K  SVE+A+ +L + Q+RP   I+V  AVFQQK     N KR KV  DAR K+     E+ALSW E +       G +IVV+++MF P++ E +E F +EL+ D+ AE  K+G V KIT+F+K+  G VV+KF ++ +A+ C+++ +GRFF GRKL C FWDG  +YT
Sbjct:    4 LWMYLDAATGEQKGPVPARIVKKLLRKSIIQPHQLVWTQRLSEWTKITSVEPFVAYYRTLMTVWYYMAENATDASKNATRTGPTTTQQLIQLFLDGKVDGMTLVWSQELDDWKPVGAVSSLREFFDEANDEIDRESELIEQIRNVPIEHQVFENG--------------SLEALVAEDGKSYLYDTESKTYVTPEDSIEE---------ELASLREASMETNAKTQGRHES------TKLLKQDTGKIVEA-------TKQ--KSFEQAKADVHGEKKRMRKKKXXSD------------------------KWKTKKTNTWVYVNGLPLDVSIEEVHDHFAKCGVIQPDITTGKPRIKLYEDKERGVLNGDGSVCYMKEASVELAVQLLDKSQIRPDWPIDVQPAVFQQK--EGKNVKRKKVKIDARAKIRMFEKEKALSWNEGEVN--EPAGYRIVVLKHMFTPAEIE-DEAFEKELQEDIHAECSKIGEVSKITLFSKHVDGVVVVKFASSGSAARCIEIMNGRFFAGRKLECGFWDGA-DYT 481          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7095.18182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G930_ECTSI0.000e+094.98RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZDG4_9STRA8.940e-11144.19RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D5D1_9STRA2.220e-9434.86RRM domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A6A4FII1_9STRA6.550e-9037.48Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A8K1CI44_PYTOL1.740e-8834.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2R9V7_PHYPN1.170e-8636.01RRM domain-containing protein n=7 Tax=Phytophthora... [more]
A0A329T206_9STRA6.890e-8636.38RRM domain-containing protein n=2 Tax=Phytophthora... [more]
K3WEI1_GLOUD3.510e-8437.98RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A2D4BYB9_PYTIN7.350e-8335.99Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A484DSV3_BRELC2.950e-8234.25RRM domain-containing protein n=1 Tax=Bremia lactu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7095contigEcto-sp13_S_contig7095:3..7753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score898.7
Seed ortholog evalue1.4e-258
Seed eggNOG ortholog2880.D7G930
Model size1614
KEGG koko:K13093,ko:K13098
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1548@1,KOG1548@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-15_002100.1
Cds size1608
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7095.18182.1prot_Ecto-sp13_S_contig7095.18182.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7095 9..7753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.6673791-UTR-Ecto-sp13_S_contig7095:2..81681463972.6673791-UTR-Ecto-sp13_S_contig7095:2..8Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7095 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.6831925-CDS-Ecto-sp13_S_contig7095:8..1551681463972.6831925-CDS-Ecto-sp13_S_contig7095:8..155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 9..155 +
1681463972.6924312-CDS-Ecto-sp13_S_contig7095:847..9241681463972.6924312-CDS-Ecto-sp13_S_contig7095:847..924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 848..924 +
1681463972.7092724-CDS-Ecto-sp13_S_contig7095:1506..16121681463972.7092724-CDS-Ecto-sp13_S_contig7095:1506..1612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 1507..1612 +
1681463972.7210317-CDS-Ecto-sp13_S_contig7095:1945..20951681463972.7210317-CDS-Ecto-sp13_S_contig7095:1945..2095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 1946..2095 +
1681463972.7305043-CDS-Ecto-sp13_S_contig7095:2494..26081681463972.7305043-CDS-Ecto-sp13_S_contig7095:2494..2608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 2495..2608 +
1681463972.739702-CDS-Ecto-sp13_S_contig7095:2933..32911681463972.739702-CDS-Ecto-sp13_S_contig7095:2933..3291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 2934..3291 +
1681463972.75799-CDS-Ecto-sp13_S_contig7095:3823..39291681463972.75799-CDS-Ecto-sp13_S_contig7095:3823..3929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 3824..3929 +
1681463972.7707226-CDS-Ecto-sp13_S_contig7095:4721..48391681463972.7707226-CDS-Ecto-sp13_S_contig7095:4721..4839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 4722..4839 +
1681463972.781562-CDS-Ecto-sp13_S_contig7095:5381..54621681463972.781562-CDS-Ecto-sp13_S_contig7095:5381..5462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 5382..5462 +
1681463972.7927318-CDS-Ecto-sp13_S_contig7095:6345..64651681463972.7927318-CDS-Ecto-sp13_S_contig7095:6345..6465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 6346..6465 +
1681463972.80322-CDS-Ecto-sp13_S_contig7095:7036..71561681463972.80322-CDS-Ecto-sp13_S_contig7095:7036..7156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 7037..7156 +
1681463972.8137038-CDS-Ecto-sp13_S_contig7095:7642..77531681463972.8137038-CDS-Ecto-sp13_S_contig7095:7642..7753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7095 7643..7753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7095.18182.1

>prot_Ecto-sp13_S_contig7095.18182.1 ID=prot_Ecto-sp13_S_contig7095.18182.1|Name=mRNA_Ecto-sp13_S_contig7095.18182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=536bp
MWMYLDGANPTQHGPLTESLMLKLLRIGTAHKDMMAWSQGMSEWQPLGQI
EAFRETSELAATPWLYLGENSEQLGPVSAAALSRLLRQGEVDGMTMAWTT
GMGDWKPLGEVSELRSLLQDGDDEEEEEGGMGADEAPEKMMVFEADDEAQ
PAYEPPPKKESKRSFMADDGTKFAWDEEKGDWKEVEGDEEEELEEEEEEE
EPWKIRRAKQQAKLKAKSKEDNKANSDAVAGQKGDTGAAVAAGGDDDPDT
AHWGELLEDAKREAEGGGGGGEKAGGAGESSENSSEAAQQKKAKKKNKKK
RGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIK
IYKDDEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQ
KGQSFDNTKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVE
NMFRPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVIKF
GTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTV
back to top

mRNA from alignment at Ecto-sp13_S_contig7095:3..7753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7095.18182.1 ID=mRNA_Ecto-sp13_S_contig7095.18182.1|Name=mRNA_Ecto-sp13_S_contig7095.18182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7095:3..7753+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGGATGTGGATGTATCTCGACGGAGCCAATCCCACCCAGCACGGGCC GTTGACGGAGAGTCTCATGCTCAAGCTCCTGAGGATCGGGACAGCGCACA AAGATATGATGGCGTGGTCGCAGGGCATGTCTGAGTGGCAGCCGCTTGGA CAGGTGGGTCTCAGCCTAGGAGCATCTCATCTGATCGGGCTTCGTTTTTT ATTGCTTCATTTTTGGGTGTGCTGTTGACTCTGTATACAGCAGGTAAGTA GGCTATCGCTCCGATGCTCCTGAGCGACTCTAAAAAGCACAGGCCTTTGT TCCGGAACCTACTGCTGTACCTCGCCTTCTCCAACCCTACTCGCCGACCC AAATGCATACCCGTACCGACGCAGTACTACTGCTGTATGAAAGTGCAGCA GTCATTCCTCGTGCCCAACTGGCCATCTGGCTGCGTTAGTTTTTCTGGGC TACTTCCTGTTTATCTGTCCTGCGGCCCTGTTTGGAACAACCACAAACGT CCCGTGCTTTCCATTTACATCGGGACTTCCGGCTGACTGTCAAGGACGCC GTCGCAAACATCTTTTCCAGTACCCGAAGGGTGTTCAGTTGATTCTTCGT GCCTCTCCAGTAGCGAAATTGATCGAAGTTGCCGCATAGGGTAAGCGACT GGTGTGGCAACTTCACTACATCTATACAAGTCTGGATCCACGTAAATGGA GGCGCTAAACCTGGTCTACCGTGTCATGTCGCTACCAGGCCCACCTGTCG TTTACCCGGTCACAACCCATAAACGCCGTACACTTCGATGAACACATTGC CTCATGATTTATCCAGCGCCTTTATCGCTTGTTGTTCTTTCGCAGATCGA GGCATTCCGAGAAACCAGCGAGCTCGCCGCTACCCCGTGGCTCTACCTGG GAGAGAACTCGGAACAACTGGGGTGAGGAAATTGAAATTGTCCCAGAAGG CTGTGCCTCCTGCAGTTCGACCTGTGAAACCTCCTATGGGTGTCATAACA GTGTGGTAGGAGCCATGCAGCTCGAGCCAGCGTCAAGCTCAAGATCTAGT TATTTGCATTCAACAACAGGTGCTCGCTCTATGGTGACCCTCAATGACAC TTAGTCGTAGACCGCAGGCAGTGGTCTGGAAGCCCTCCAATCCAACCAGC ACAGAATGACACCTAGAGTACATCAAGTGTTCCCCTTTCAGCTCGTTTTT CCTTCTCCAAGGAAGCTCAACGCACACCGGGTAGTTTGTCGGGCTTACAA TTTGTTGATTTTTCCTACCGCGTTCGTCTGCCGTTCACTAGCAGTGACTG TCATTGATTGATCTTCACAGCAATCTCACTCGCCCATGTTTGTTCTACCG CGTTTGTTCTACCGCCTTTACAGATACATGCATCGACCGATATTGTTTCA TGTTAAGTGTTTTCCTCCGTTGCCTCGTGTATTTCTCGTCACCCCTGGTT TCGTTTGCTTTTATGTACCGCACCCGTGTGCCGTTGCGGGTGCCTTTTCC TCAGGCCGGTAAGCGCCGCCGCTCTGTCGCGGCTGCTTCGACAGGGGGAG GTGGACGGAATGACCATGGCCTGGACCACGGGGATGGGAGACTGGAAGCC CCTTGGCGAGGTAAGTGCCGAATTTTGTACGCGAGGAGCGTTCGGCATAC GGCAGAGGGACTTCCCCCGCGCTGCTCTTACCCGAAGGTGTGCATTGCGA ATTCTCGACCTTCCTTGACGAAGCGCTACAATCCTGTTTCGTTTTAGGTT TTATGCACAGACGTCTTCAAGCACATTCAGTGGGAAAGAGCTTTCAAGCG CGCGGCTGTGCATGGTTCAGAAGAACAGGCAACTGAGGTGTAAATAGTCC AATTTCGTGCTCTCGATTCGAGAATGTCTTTTTAACGTTCATAAATGGCC ACTCTTGTTGGTTGCGGACCGATCAACTATGCAATCTGTGCAGGTATCGG AGTTGCGGTCACTGTTACAAGATGGGGATGACGAAGAGGAGGAGGAGGGA GGGATGGGGGCGGACGAAGCTCCCGAGAAGATGATGGTCTTCGAGGCAGA CGATGAGGCGCAGCCCGCGTATGAGCCGCCTCCGAAAAAGGAGGTGAGAG TGGCTGACTCGCCGTTTTGGCAGCTGGTGAACTTTGGCCGCTGTATGGTT GTTTTCTCGAGCGGTGATGTCAGCAGATTCAGTGACGCCATGCACGCTGT GAAGAGTAGAGGGCTTGGGCTGTTTGTTGTGAAAGTTATACTCTCACGGA TTCGAACGAAGCGCGCGTGTGCGTGTTTGCCGTCTGCTGTGCTGGTGTTG GCATTGTTGCACATACCGTCGGCGGCAAGCAAGAAAGCGGCGTCATGAAA CCGCCGCAGCTCGTCCCGGTGAAGGGGCGTGCGGTTCGTTCGTGTTATCG TTGTGTACGGTGCCCCCTCACCGTTGCTTCTTAGCAGACTGACGTACAAA CCTGTGGTGTCCGCCGTTGTGGTCGCGTTGTGATGGTGGCAGAGCAAGCG GAGCTTCATGGCCGACGACGGTACCAAGTTTGCTTGGGACGAGGAGAAGG GGGACTGGAAAGAGGTAGAGGGAGATGAGGAGGAGGAGCTAGAGGAAGAG GAAGAGGTGAGCTTCTGGTGGGCTTGTTGCTGAAGATGGTGATTTCGCGT TGTGGCTGTTTGTTGCTGGTGTTGTTGATGCTGGTGCTGCTGTCGTCGCT TCCTTGTGCCATGCGTATGATGGCTGCCCCATCTTGGCGTGTCATTCCCC TTGCCCTCTCCGTCGTGCTGAAGTAGCCGCTGTGTCGTTGTGTGCTACAT AGTACGCAGTTTGGCTCCGCAGACCTCCCCGAAATCTCCTCACCACGGAA CCCTTCGAGTCCCCCAACAGTGTCTATCCCCGTGGAACCCATACTAAGCA ACCCTCGCTCCTCCGTTGTTGCTTTTTGCAGGAGGAAGAACCTTGGAAAA TTCGAAGAGCCAAGCAGCAGGCCAAGCTCAAGGCCAAATCCAAGGAGGAC AATAAGGCCAACAGCGACGCCGTCGCCGGCCAGAAGGGTGATACGGGGGC CGCCGTAGCGGCAGGCGGTGACGACGATCCCGACACGGCGCACTGGGGGG AGTTGCTAGAGGATGCCAAGCGGGAGGCCGAGGGCGGGGGAGGGGGGGGA GAGAAGGCGGGTGGTGCGGGAGAGAGTAGTGAAAACTCTAGCGAAGCGGC GCAACAGAAGAAAGCCAAGAAAAAGAACAAGAAGAAGCGAGGGCTCCAGT GGAACAAGAAGGCTACTAACCTCTGGGTCTACGTAAAGGGTGAGAGCATG GCTGTTGTGGTGGTGTTGATGGTCGTCACTACCGTTTTTGTCGTGGTTTC TGCAGAGTTCCGTTCCATGTTGGGGTTTTTGATAGCAAGTGATGATTGTA TCTTGGTCACGTCTGAACCGGCGCGAATCTTGTAACCGTGTGCCTTAGGA TCTTCTGTCGTCCTGCTCACGAAAAAGTGTCGACGTTCAGGCCTCCCTAA GACCAGAGTCTCAGCGCGTTGTGCATGCCTGTGCGCGTAGCTGTATGAGT TAGTCGAGATAGTCGTAGGCGGGTGTCGTGGCTTGTGGTTCACTTACTAT CGCGGGACATCAGGCCGCCGCCTGCCCTTCATGTGGAAGCGCCATAGTCA AGTGTCTCTGATTGTACAGTAGTCAGCGATGGCGTAAGATTTCTCCGGGG GTGTGATCTCGTGTACTCGTGCCGGTGTAGGCATAGTTCAAGTCCGCCTG CACGTGCCTTTTTTGTTTTCGGGCCTTGTTTCCTGATGCTTCTGGTGTTG TTTTTGTTGCATCTGTCGCAGGTCTTCCGGTGGACATAGAGGTTGAGGAG GTTAGGGAACACTTCAGCAAGTGCGGCATCATCGCTACGGACCCCCTGAC ACAACAACCCAAGATCAAGATTTACAAGTGAGACACACTAACGTTTAAAC GTTGATACGTGAGGTCGATATACGGTCGGCAAAGACCTGCTAGCAATGTC GAGATTCGAAGAATAAGATTGGTATTGACACGCAAGGCGAGGCAGCCCGG CTGACAGTTCTGCGGCACGTGCAACGCCCGTTCTGGTAGAATTGAATTCG CGTTTTGTTTACTTCGGCGCCACTTGCCTCTAGTTTTCGCGAACAAACTG CGCTTCCTACGGTGCTTGTACTGTAGTTGTCTCGGTAGTATTGTTAAGGC AATGATGATACCAATCACTCACCCAACCCACCGTACAAGTTTTGGAAATG TTGTGTCCTAGCACCAACCGCTGTTGTGGTGCGCTAACACTTACCCCACT CTTGACGGCAGCGGTATTCAACGTTCTTCTATTTATGCATATGCACTCAT GATACGTGTTACTCGTGCTCGTATGGTTACCCCGCGAGTGTTACTATGTG GTATACCCGTCACGCACACCTGTGCTATTTCTTTCGGGTTTCGAGTAGGC ACGGGCAAGATCACCCCTATCCCCCATCACAAAAGGACGACCGCCATGGC TTGAATTCGTCAAGCAACAGCTGTAGAGTTTGCCATCGCGTCGATTCACA AGGCCCATGCCTGGCTGATCGTTTGACGTCTTCGCTTGTTTTGATACCTA TATGCAGGGAGGACCGCCATGCTACTACAACCTGGCGGGGTTTGGGCACC TAACAATTCACCGGGCTGTCACCGTGCCGTTTACGTGACCGCGTTTGTTG TTTGTTTTTTGTTGGTCAGGGATGACGAGGGACACCCGAAGGGCGACGGC AGCGTCTGCTACGCCAAGGCAGAGTCGGTGGAGATGGCCATCAACGTGTT GCACGAGGGACAGCTGAGGCCGGGAGTGACCATCGAAGTGCGTGACTCCA CGTGTACCATCCCCACCAAGTGGCGCCGTTTCCCTGCTGTCGTAGACGTC GCACTGACGACGAGACGAGGGGCTGACCTCACCACTGAACCGATGTACTC CTGCTGCCCTGCTGCTGCTACCGCTACATGTGTTACGTGGTGCCGATCTG AAGAATCGTTTGCCCGCACGTGGTACAGGGAGCATTTGTGCAGGCTGCCT TTGCTGTATGATTCTTTTGCTTTAGACAAAACAATAGTCGGATCTGCGGA AGGGGGCGTACGGAATTTCCGTTGGAGCCATATGGTGAGGCCAGAGACAA GAGGCTTTTGGCTGACCTACAGCTACAACTTTCACGTTTTTTTTTCCGCG TTAGCTCTTCTTCGTGTTCTCCCTTCCACAACTCGCACAGGGGGCTCTCC TAATCTCTCTATCTCTCTCCTGTTCATTATTTTGTTGCCACGCGCTCTCT TTTGCTTTTAACTGCTTTCAATCGGGCGTGTTCGTTTATTTTTGTGGAAT ACCATGGTATCTGCTATATGTATACCCAGGTGTCGAAGGCTGTCTTCCAA CAAAAGGGTCAAAGCTTCGACAACACCAAGCGGCTCAAGGTCAACGACGC CCGTGTCAAGGTGGGGTATGGCGCGGAAAATGTTTTGTGTGTTTTGTTCA GCTGCTATTATTTCGCACCATCAAATAGATATGGGACGTAAATTGTTTCT ATTTTGAGTGTTGTCCAGCTGCTGTTATTCCACGCCATCGAATCGCCCGA ACTCTTGGATCTGTGGCCACATCCAATCCAGCAGGGGGATAGCCGAAACA GGCAACACTGACAGCAGTAGTGTCATTCCTGTGCGACTAGCTTGTGTTCA ATGGATTGCCTCTTGAGCCCTTTGCTGCTGTATGCCCAGGCCAGCGTGCC TCAAACGAGTTTCTGTGTCGATTTTGACTTCATGTAGTACATTATGTGTT TCCGGATGGTTTTGAGGTTGTCACTCGGGCGAGAGTTCTCGCGCTGAGTT TTAGCGCTTCTGTCACGGAGTTGCGCCTGTTTTGACCCAACAACAACCGA AGTATATAAACGTTTTTACCTACACGGGGGTGAGGCGGGAGGGGCACGTT GCACACTGCGATATCGCCGTACAGGAATAGCCTGCGGCGCTAGAGCCAAG AAGGTGGAGAACTGTATTGTGTGATTGGGGAGACCCTTTGGAGTGGGGAT TGGGGTGTGTACGGTAACCCGCGTTTTTTGTGTGCACCGTGACATAGCGT GATGTAGCAAGCGCAGCGGACAGGTTTTTGCCCCAGTGTTTTTCTCACTC TCGACATGGCTATGACAAAAGCGGCGCACATTTTAACGTCGCCGCCTATG CTCAGTTCGACCGCACTAAATACCTGTTCAAAGGCGGCTCACCATGTTTT TGGTGAACCGGACTGACCTTTCCCTTTTGCTCCTGGACCCGATCTTTCGT TGTCTGATGTGGGCCTTTTTTTCATTCATATTTTTCTCTGCAGGTGGCAA GAGCGGCAGCCGAGCAGGCCTTGTCGTGGGCGGAGAACGACGACACGGGC GCAACAAAGGGGGGGCTTAAGATCGTCGTCGTGGAGAACATGTTCCGTCC GTCAGACTTCGAGGTCAGTACTTTGTGATCCGATCGCGCCCTTTGGGAAT ACCTAGGACAAGACGTTCCTCCCCCCCATCCACCCCCCGTCGAAGAACCA CAAACTTTAGAGCCTGGTTCATTGCGGTTGTACACACCTTGTATCCACCC GAGTATGTAAGCCGCTGTTTCAGTGAAACATAAGAGTTTGGTGTGTGCGG AACGTACAAAAGTGATAAGATTCGTGAGGGAAATATGTGGCACCATATCG TAACCGAGAAAATCATGGACGGTATCTTGGACCTCCAACGTTGTTAGTTT TTGTTACGCAGTGCGGATGGTACTCGCTCTTTTGTTGACACTTTGGCGTA GGGTCTGGTTTTCCCTCGACCGCTGCACCCAACTTTGGCCCACCGTTCAA CCTTTGTTGTATTTTTTGGGGGGGGGAGGGGGCAGCCACCTTTCGATGGA AGAGCAGGTCCACGAATTTGCTCGATTCGTCCGCATGTTGGTTCGGTGCT CCAACTCCTTTTCTCGCGGGCATGTGTCGCTCCGGCTTTTCCGTTCCGTG CCGTGCCGTCGTCGTCGTCGCTCGACTTGCGCAGGCAAACGAGAGGTTTG GCGAAGAGCTCGAGGCCGACCTGCTGGCCGAGGGCGAGAAGCTCGGACCC GTAGAGAAGATCACGGTGTTTGCCAAGAACAACAAGGGGCCTGTGGTAAT CAAGGTAAGAGTCACTTCGAAATGGCTCGTGTCCTCAGGCGCTCGTTGCG GATGACTGTACATCATGCGGCCCGCCACGCACCCATGTCGAATCCACGTC GCCCCGCGATAATGGATCCTTTTTTTCGCGTTGAGAATCGAACGATCACA AGCCAACCCAAAAGCAAGGTCTAAACATTTCATGCCAAGACGAGGAAGAG AGTCACACCGCTTGAGAAGACATTACAGTAGGCGAAAAACAATCTTCGAG AGAGATGAAAGTCCAGAGGGAAAAAAATAATGTAGGAGAGTGCGGCGCGG GTATCGTGAGTGTTGTCACGAGCGTCGTCAAAGCAGGAGGAACAAGAAAA GTCCAAGAAGTGCTTGAATACAGACTGGGCTGGAAAAGAAGCCTGTGGAT CTAACGGAAAGCCGTTGTGCCTGCCACTCTTGGTTGCCCCTTTTTCCGTA CGATGTTCGGCGTGTTTTTTTGCGCTCCGATCACGAGCAGTTCGGGACAG CGTACGCGGCTTCCGAGTGCGTGAAGGTCTTCGACGGGCGATTTTTCGGC GGCCGCAAGCTGTCGTGCCACTTCTGGGATGGAGTGACGAACTACACGGT C
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7095:3..7753+

>mRNA_Ecto-sp13_S_contig7095.18182.1 ID=mRNA_Ecto-sp13_S_contig7095.18182.1|Name=mRNA_Ecto-sp13_S_contig7095.18182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7095:3..7753+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGATGTATCTCGACGGAGCCAATCCCACCCAGCACGGGCCGTTGAC
GGAGAGTCTCATGCTCAAGCTCCTGAGGATCGGGACAGCGCACAAAGATA
TGATGGCGTGGTCGCAGGGCATGTCTGAGTGGCAGCCGCTTGGACAGATC
GAGGCATTCCGAGAAACCAGCGAGCTCGCCGCTACCCCGTGGCTCTACCT
GGGAGAGAACTCGGAACAACTGGGGCCGGTAAGCGCCGCCGCTCTGTCGC
GGCTGCTTCGACAGGGGGAGGTGGACGGAATGACCATGGCCTGGACCACG
GGGATGGGAGACTGGAAGCCCCTTGGCGAGGTATCGGAGTTGCGGTCACT
GTTACAAGATGGGGATGACGAAGAGGAGGAGGAGGGAGGGATGGGGGCGG
ACGAAGCTCCCGAGAAGATGATGGTCTTCGAGGCAGACGATGAGGCGCAG
CCCGCGTATGAGCCGCCTCCGAAAAAGGAGAGCAAGCGGAGCTTCATGGC
CGACGACGGTACCAAGTTTGCTTGGGACGAGGAGAAGGGGGACTGGAAAG
AGGTAGAGGGAGATGAGGAGGAGGAGCTAGAGGAAGAGGAAGAGGAGGAA
GAACCTTGGAAAATTCGAAGAGCCAAGCAGCAGGCCAAGCTCAAGGCCAA
ATCCAAGGAGGACAATAAGGCCAACAGCGACGCCGTCGCCGGCCAGAAGG
GTGATACGGGGGCCGCCGTAGCGGCAGGCGGTGACGACGATCCCGACACG
GCGCACTGGGGGGAGTTGCTAGAGGATGCCAAGCGGGAGGCCGAGGGCGG
GGGAGGGGGGGGAGAGAAGGCGGGTGGTGCGGGAGAGAGTAGTGAAAACT
CTAGCGAAGCGGCGCAACAGAAGAAAGCCAAGAAAAAGAACAAGAAGAAG
CGAGGGCTCCAGTGGAACAAGAAGGCTACTAACCTCTGGGTCTACGTAAA
GGGTCTTCCGGTGGACATAGAGGTTGAGGAGGTTAGGGAACACTTCAGCA
AGTGCGGCATCATCGCTACGGACCCCCTGACACAACAACCCAAGATCAAG
ATTTACAAGGATGACGAGGGACACCCGAAGGGCGACGGCAGCGTCTGCTA
CGCCAAGGCAGAGTCGGTGGAGATGGCCATCAACGTGTTGCACGAGGGAC
AGCTGAGGCCGGGAGTGACCATCGAAGTGTCGAAGGCTGTCTTCCAACAA
AAGGGTCAAAGCTTCGACAACACCAAGCGGCTCAAGGTCAACGACGCCCG
TGTCAAGGTGGCAAGAGCGGCAGCCGAGCAGGCCTTGTCGTGGGCGGAGA
ACGACGACACGGGCGCAACAAAGGGGGGGCTTAAGATCGTCGTCGTGGAG
AACATGTTCCGTCCGTCAGACTTCGAGGCAAACGAGAGGTTTGGCGAAGA
GCTCGAGGCCGACCTGCTGGCCGAGGGCGAGAAGCTCGGACCCGTAGAGA
AGATCACGGTGTTTGCCAAGAACAACAAGGGGCCTGTGGTAATCAAGTTC
GGGACAGCGTACGCGGCTTCCGAGTGCGTGAAGGTCTTCGACGGGCGATT
TTTCGGCGGCCGCAAGCTGTCGTGCCACTTCTGGGATGGAGTGACGAACT
ACACGGTC
back to top