mRNA_Ecto-sp13_S_contig7094.18180.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7094.18180.1
Unique NamemRNA_Ecto-sp13_S_contig7094.18180.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7094.18180.1 vs. uniprot
Match: D8LE46_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE46_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 4.840e-90
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 1 
Query:    1 QIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTDDGSTFYKSFTNSKVFGTTLVEYEFESFCYENEFLSQVFLVTVLDTTYKYNFE 429
            +IVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLE+LDMTPSSTCVTADTPDTADCYSA TTTVTLTDDVYVELTFNIGIWT+DGSTFYKSFTN+KVFGTT+VEYEFESFCYEN FLSQVF VTVLDTTYKYNFE
Sbjct:    2 KIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLELLDMTPSSTCVTADTPDTADCYSASTTTVTLTDDVYVELTFNIGIWTEDGSTFYKSFTNTKVFGTTVVEYEFESFCYENAFLSQVFFVTVLDTTYKYNFE 144
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BLAST of mRNA_Ecto-sp13_S_contig7094.18180.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.280e-84
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 1 
Query:    1 QIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTDDGSTFYKSFTNSKVFGTTLVEYEFESFCYENEFLSQVFLVTVLDTTYKYNFE 429
            +IVSVDGDYSEILDTSCGTSAVAVGSTVYELSG GDLDSR LEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWT+DGSTFYKSFTN+KVFGTT+VEYEFESFCYENEFLSQVFLVTVL TTYKYNFE
Sbjct:  100 RIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGAGDLDSRVLEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTEDGSTFYKSFTNTKVFGTTVVEYEFESFCYENEFLSQVFLVTVLGTTYKYNFE 242
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BLAST of mRNA_Ecto-sp13_S_contig7094.18180.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.970e-23
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 QIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTDDGSTFYKSFTNSKVFGTTLVEYEFESF--CYENEFLSQVFLVTVLDTTYKYNFE 429
            Q+VSVDGD+SEI +TSCGTS +AVGSTVYELSG G L SR LE ++M+ S  C     P TA+CY+  T  + L  DV + LT  +  + D   T Y+S   ++V G + V    +    C E  F+ Q+   TV    Y YNF+
Sbjct:  144 QVVSVDGDHSEIAETSCGTSVMAVGSTVYELSGDGALGSRSLEAVEMSSSDDCSITGVPSTAECYTGDTA-MALDGDVSMALTICLCYYMDGSRTVYRSQVFAEVVGASAVSVPGDEIEICLEAGFIMQLTTATVEGEDYHYNFD 287
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BLAST of mRNA_Ecto-sp13_S_contig7094.18180.1 vs. uniprot
Match: D8LE44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE44_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-12
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:   64 VAVGSTVYELSGVGDLDSRGLEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTDDGSTFYKSFTNSKVFGTTLVEYEFESF--CYENEFLSQVFLVTVLDTTYKYNFE 429
            +AVGSTVYELSG G L SR LE ++M+ S  C     P TA+CY+  T  +TL  DV + LT  +  + D   T ++S   ++V G + V    +    C E  F+ Q+   TV D  Y YNF+
Sbjct:    1 MAVGSTVYELSGDGALGSRSLEAVEMSSSDDCSITGVPSTAECYTGDTA-MTLDGDVSMTLTICLCYYMDGSKTIFRSQVFAEVVGASTVSVPDDEIEICLEAGFIMQLTTATVEDEDYYYNFD 123
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BLAST of mRNA_Ecto-sp13_S_contig7094.18180.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.610e-9
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 1 
Query:    4 IVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLEVLDMTPSSTC---VTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTDDGSTFYKSFTNSKVFGTTLVEYEFES----FCYENEFLSQVFLVTVLDTTYKYNFE 429
            +  V+G+YSE+++TSCG+SA+ VGSTVYELSGV D   R L V D++        V    P  ADCYS  +  + +      ELTF    W ++G    K  TN +      V+          C +    SQ+  V   D+++ Y F+
Sbjct:  113 VAKVEGEYSEVVETSCGSSAILVGSTVYELSGV-DFGGRSLGVADLSADDCAGDGVIPTAPSDADCYSGESP-IDVEGSTGAELTFCHCKW-NEGENVAKYATNVRASVKDYVDISVPDSGLVMCQDQGVFSQLVTVLADDSSFYYLFD 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7094.18180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LE46_ECTSI4.840e-9094.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J9X3_9PHAE1.280e-8495.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9W9_9PHAE7.970e-2344.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE44_ECTSI1.530e-1239.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBT9_9PHAE1.610e-934.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7094contigEcto-sp13_S_contig7094:4289..7624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size429
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004110.1
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.558305-CDS-Ecto-sp13_S_contig7094:4288..43151681463972.558305-CDS-Ecto-sp13_S_contig7094:4288..4315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 4289..4315 -
1681463972.5689962-CDS-Ecto-sp13_S_contig7094:4836..49441681463972.5689962-CDS-Ecto-sp13_S_contig7094:4836..4944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 4837..4944 -
1681463972.5789874-CDS-Ecto-sp13_S_contig7094:5963..60601681463972.5789874-CDS-Ecto-sp13_S_contig7094:5963..6060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 5964..6060 -
1681463972.5880244-CDS-Ecto-sp13_S_contig7094:7427..76241681463972.5880244-CDS-Ecto-sp13_S_contig7094:7427..7624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 7428..7624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7094.18180.1prot_Ecto-sp13_S_contig7094.18180.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7094 4289..7624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7094.18180.1

>prot_Ecto-sp13_S_contig7094.18180.1 ID=prot_Ecto-sp13_S_contig7094.18180.1|Name=mRNA_Ecto-sp13_S_contig7094.18180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
QIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLEVLDMTPS
STCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTDDGSTFYKSF
TNSKVFGTTLVEYEFESFCYENEFLSQVFLVTVLDTTYKYNFE
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mRNA from alignment at Ecto-sp13_S_contig7094:4289..7624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7094.18180.1 ID=mRNA_Ecto-sp13_S_contig7094.18180.1|Name=mRNA_Ecto-sp13_S_contig7094.18180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7094:4289..7624- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATTGTGTCCGTCGACGGGGATTACTCTGAGATCCTGGACACGAGCTG
CGGGACGTCGGCCGTCGCTGTCGGCAGCACGGTCTACGAGCTGAGCGGCG
TGGGCGACTTGGACTCGAGGGGGCTGGAGGTGTTGGACATGACCCCGTCA
AGCACGTGCGTCACGGCGGACACGCCTGACACGGCCGACTGCTACAGGTG
CGACTGGTCGACGACTGGTGAAAGTGGGTTGTTTGTTCGACGGGTTGATC
TTCCTCCCCCTGGCGGGAAGGGGTTGTGCTCGAGATCCTACCCTCCCGAA
GGTTTTGTTGCTGCTTACGGTGGCGGTGGGAAGGATGCTTGAGATCCACC
GTCCCCAAGGATGTGTTGCTGTTCGTGATGGTGGTGGAGGGAAGGATACT
TGAGACCCACGCTACCGGAGGTGTATTTGTTTGTTGCGTGGCACCTCCTG
TACAGTCCCAGCGGGGGATGGGCTCCACTCGGCTGCCGGATGATTTGAAG
GCTGGCGCCTTGAACCCAGTGCTGTTTTTGGGGATGTTTTTTTTTCTTGT
GTGTGTTTTTGTGTGTTGTCATGGAATAGGGAATCGTTCTGGCCTATTTG
GTCTTGGTACCTCTTCTTCCTCGCCCCTCAAGGCAACCAACGAGCGCAAC
CGGGGTACTTTGGTATCAAGCCACCAACTAAGCCACGAGGTTGCAGCAAC
ACGCCAGGGAGAAGACCTTTCATCTGTATGCTCTGTTGATTGGTCGGGCT
GTTTTGCTTTTTTGTTCTTCCTTGATACAGCACAAAAATCCATCTCTACC
CACAAACAGGGGTCTAGGATGTGCTCCGAGTATTGGTATTGAATTCATAA
CGTTCGCGGAGCACCTTGTGCCTGTGTTTCTACGGTTCCTCAAGCAGCAT
ATAAATGTCTCGGTCCGGGGCATGTGGTATCGTACGCCCCCCATGGAACA
AATACCATAGGTTGCACAAGGTGTCACACCCCCTGGACCGATTTTCAATG
CTCGATTGCGCCACGACGAAGAGGATGCCGCAACCAACGGACAGGCTTTC
CGAAAATTATCGACGAGACGGTTCCAACACCCCCATTTTCGGCACCGTCG
CGTCTTTTCCTGCCCAGAAATCGAGCTTCGACAATCGGTCCAGGGGATAT
GATATCTTACGCCCCCCAACAACTACATGTCGTCGGGGATTTTCATTCAA
GTGTGTGTCGTGCTTGGCCTGGGGTGGTTGGCGAAGCCGTCAGACTACTT
CCACACAAACACTACCGCAAAAAAGCGCGAGAGTCGTCGATTAAGACCCC
GAAGACCGACCTTCGTCTTAAATTGTTGTAATGCTCCACTAGGACCAAGG
GGTTGTCAATTGCGACAAGGGTCGTTTGTTCGGGAAAATATTCTGGCCGA
GAATGGGGTTGCGCGCACGCATCGTCCGGTCGGTGTTTGGCACCCTCTTG
GAAGAATGTTAATCCAGAACGTCGCGTGTTCTTTTTCTGATCCCTCGTTG
TCGTTGTTGTTATATTTTTTTTTTATCCTCCTCTTTACTTTTTTTCTTCT
CGTTTCCGTTTCAGCGCCCCCACGACAACGGTTACCTTGACCGATGACGT
GTACGTGGAGCTAACCTTCAACATCGGGATATGGACCGATGACGGTAGCA
CGTTCTACAAGGTATGTTGATTTTAAGTTGTGCTCGGCAGTAAACCGCAG
GTTGCGTAAGATATCACACCCCCTGTGGACCGATTTTGAAAGCTCGATTA
CTTCACGATGAAGAGGATGCCGAAATCAAAGGATATGGTTTCGGAAAGCT
CTCGTCCAACGCCGCCATATTCGGCACTGCAGAAATCGAGCTTCGTAAGT
ATCTAAAGCTTGATGACTCTTCGTCGACCACAGCTGCTGTCCTGAGACGA
ATTACAACCCCGTTGAATTGAGGGTGGGCCATTAGCGCACAGGAGTCGAG
CTTCCTTTGAAACATGAGTCCTGGGGGTATCGTTCTCGAGCTTTGTGGGA
TATACATCCACGGTACACCTTACACCTTTCCGGTATTGTAGCAGCTATAC
CGTAGGTTGGGTAAGATGTCACACCCGCTGGACCGATTTTGAAAGCTCGA
TTACTCCACGACGAAGAGGATGCCGAAGCTTAAGTACTTTTACGTTTTCG
GAAAGCTCTTGACGAGAAGGTTCCAACGCCGCCATTTTTAGGCACCGTCG
CTGCTTTTACTGCTTATATATCGACCGCCGAAAATTTACCCGGGTGTGTG
TGATATGTTGTGCAACCTACGGTAGCAGTTGCGCACCGGTAGCACCAATA
CGGACAAGGACAAGGTGGTCTTGCATCTTTTTTGTTTCACGCCCAATAGA
GATGGAATCCAGGATTTTTCTTGTTTTTTTTTCTACCCCGGTTGCCTGTC
CGGTCCTTGGTACCAAGCACCTCTGTCGCCCGTAAATGCCCACCGAAATA
CCCACACAAATGGCGGTATCTTGAGCACCATCCCGCGTATACCGTGTGGT
ACATGCTCAATTTGATGAACAATTTTTGAGGGCCGCCTGCTTCTTTTGGG
CGCGTGTGATGTCCTCTTAACTTGACGCGCTCTGTCTGCCTGTGTATTTT
GTTTTGTTTTTTCTCTCCTCCGCTTCTTATCGCCGTGAAATGGGATGGGA
TGGAATGGAATGGAATGGATTTGCCCCCAGTCGTTCACTAACAGCAAGGT
GTTTGGAACCACCTTGGTTGAGTACGAGTTCGAGAGCTTCTGCTACGAGA
ACGAGTTTTTGTCCCAAGTCTTCTTGGTGACTGTTCTGGTGAGTGGAAAA
TTGGGGCAGAAGAGGGAATGAAAGAGAGAGAGATTAGAGAGAGAGAGAGT
GGGGATCAGGGGTGTCGATCCGTGAGATCTTCCATTGGCCAGTTCGAAAG
GGACGAATTTTTGCAGGATTACGAGAAAGTAGACCATCTGAACACTGGTA
TTTGTAGGTCCAGAAAGGATCGCTGGGACGAGCATCCTCGAGCGAGTGAC
AAGCCCATTGGAGCAAATAAACAAAAGTTGAATAGAGAGAAACACACTTA
AGGTTAGTGATGCTATTCAAATGGCATGGAAGCTTCCGCAGCAAGCCATG
CTGCGTGGTGATGCTGAGTCTTCGCCTTGTTCTTTCGCAAGTGCTCGTAT
TATTGTTCGTCTTTTGTTGCCTTGTCCTTTCCCCCCCCCCTTGCCCCCCT
ATCTCTCAACCTCTGCCTGCCGTTGCCGCCGCCGTCGTTCAACTCAACAA
CCCTTCGACCCTTCTGGGAATCATCATGGTTTACGTATCCTCCCCACAAC
CACACGTAGGACACGACGTACAAGTACAACTTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7094:4289..7624-

>mRNA_Ecto-sp13_S_contig7094.18180.1 ID=mRNA_Ecto-sp13_S_contig7094.18180.1|Name=mRNA_Ecto-sp13_S_contig7094.18180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7094:4289..7624- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATTGTGTCCGTCGACGGGGATTACTCTGAGATCCTGGACACGAGCTG
CGGGACGTCGGCCGTCGCTGTCGGCAGCACGGTCTACGAGCTGAGCGGCG
TGGGCGACTTGGACTCGAGGGGGCTGGAGGTGTTGGACATGACCCCGTCA
AGCACGTGCGTCACGGCGGACACGCCTGACACGGCCGACTGCTACAGCGC
CCCCACGACAACGGTTACCTTGACCGATGACGTGTACGTGGAGCTAACCT
TCAACATCGGGATATGGACCGATGACGGTAGCACGTTCTACAAGTCGTTC
ACTAACAGCAAGGTGTTTGGAACCACCTTGGTTGAGTACGAGTTCGAGAG
CTTCTGCTACGAGAACGAGTTTTTGTCCCAAGTCTTCTTGGTGACTGTTC
TGGACACGACGTACAAGTACAACTTCGAG
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