mRNA_Ecto-sp13_S_contig7094.18179.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7094.18179.1
Unique NamemRNA_Ecto-sp13_S_contig7094.18179.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7094.18179.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 1.850e-135
Identity = 194/205 (94.63%), Postives = 199/205 (97.07%), Query Frame = 1 
Query:  274 TLPAVGNVTTETPVGGGGNNLAATPSPTVLVLVNNTQAPSFDYEDEDACILPESKPCTEATSFSNTNEGIGDYYEPACELVEGEEQLGGCNADASSLCRMCFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQDAFNLDGQRCVSASPAPSTPALTEIPVGEIEPRSFDDISFDDGGWEMNAGEVAALSALGLLATLTFFPFCSK 888
            TLPAVGNV TETPVGGGG++LAATPSPTVLVLVNNTQAPSFDYEDE ACILPESKPCTEATSFSNTNEGIGDYY+PACELVEGEEQLGGCNADASSLCRMCFFNTPLYV KHPDEDLPDYPDCPCCVLDIYEQDAFNLDGQRCVSASPAPS+PALTEIPVGEI PR FDD+SFDDGGWEMNAGEVAALSALGLLA LTFFPFCSK
Sbjct:  364 TLPAVGNVMTETPVGGGGDDLAATPSPTVLVLVNNTQAPSFDYEDEGACILPESKPCTEATSFSNTNEGIGDYYDPACELVEGEEQLGGCNADASSLCRMCFFNTPLYVAKHPDEDLPDYPDCPCCVLDIYEQDAFNLDGQRCVSASPAPSSPALTEIPVGEITPRGFDDLSFDDGGWEMNAGEVAALSALGLLAALTFFPFCSK 568
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BLAST of mRNA_Ecto-sp13_S_contig7094.18179.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 5.250e-30
Identity = 77/186 (41.40%), Postives = 102/186 (54.84%), Query Frame = 1 
Query:  337 AATPSPTVLVLVNNTQAPSFDYEDED-ACILPESKPCTEATSFSNTNEGIGDYYEPACELVEGEEQLGGCNADASSLCRMCFFNTPLYVEKHPDE-DLPDYPDCPCCVLDIYEQDAFNLDGQRCVSASPAPSTPALTEIPVGEIEPRSFDDISFDDGGWEMNAGEVAALSALGLLATLTFFPFCSK 888
            A TP PTV VL + T AP  + E E  AC  P   PCT  T FS+ N G+G YY+P C          GC    S LCR C+FN  +  E + D+ D+PDYP+CPCCV+D Y++ A      RCV A+P+P+    TE         + +  SF+D   +M+ GE  A++AL L   LTF P C+K
Sbjct:  442 AVTPGPTV-VLYSETLAPLTEEELEQVACTWPLDGPCTTETLFSDINRGLGAYYDPGCSGA-------GCGVGDSGLCRTCYFNLTMGEEGNDDDVDMPDYPECPCCVMDEYDRSA-----DRCVGATPSPAQGTGTE---------ALETYSFEDKPLDMSGGEGFAVAALALFGLLTFLPLCTK 605
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BLAST of mRNA_Ecto-sp13_S_contig7094.18179.1 vs. uniprot
Match: D8LE45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE45_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.860e-23
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:  571 MCFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQDAFNLDGQR 699
            MCFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQDAF+LDGQR
Sbjct:    1 MCFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQDAFSLDGQR 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7094.18179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J9X3_9PHAE1.850e-13594.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBT9_9PHAE5.250e-3041.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE45_ECTSI2.860e-2397.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7094contigEcto-sp13_S_contig7094:33..4195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1418
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004120.1
Cds size891
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.490464-UTR-Ecto-sp13_S_contig7094:32..5591681463972.490464-UTR-Ecto-sp13_S_contig7094:32..559Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7094 33..559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.5028582-CDS-Ecto-sp13_S_contig7094:559..7501681463972.5028582-CDS-Ecto-sp13_S_contig7094:559..750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 560..750 -
1681463972.5122435-CDS-Ecto-sp13_S_contig7094:2015..21651681463972.5122435-CDS-Ecto-sp13_S_contig7094:2015..2165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 2016..2165 -
1681463972.5220978-CDS-Ecto-sp13_S_contig7094:2907..30571681463972.5220978-CDS-Ecto-sp13_S_contig7094:2907..3057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 2908..3057 -
1681463972.531624-CDS-Ecto-sp13_S_contig7094:3795..41951681463972.531624-CDS-Ecto-sp13_S_contig7094:3795..4195Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7094 3796..4195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7094.18179.1prot_Ecto-sp13_S_contig7094.18179.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7094 560..4195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7094.18179.1

>prot_Ecto-sp13_S_contig7094.18179.1 ID=prot_Ecto-sp13_S_contig7094.18179.1|Name=mRNA_Ecto-sp13_S_contig7094.18179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
PAPTPSPVTPSTPAPVTPLTEPPTEPATEPPTAPATPAPTTAVAAAATPG
PVAALTPTAAPQAAAAAATPAPVLASLAPVAPPANTATAAPTLPAVGNVT
TETPVGGGGNNLAATPSPTVLVLVNNTQAPSFDYEDEDACILPESKPCTE
ATSFSNTNEGIGDYYEPACELVEGEEQLGGCNADASSLCRMCFFNTPLYV
EKHPDEDLPDYPDCPCCVLDIYEQDAFNLDGQRCVSASPAPSTPALTEIP
VGEIEPRSFDDISFDDGGWEMNAGEVAALSALGLLATLTFFPFCSK*
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mRNA from alignment at Ecto-sp13_S_contig7094:33..4195-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7094.18179.1 ID=mRNA_Ecto-sp13_S_contig7094.18179.1|Name=mRNA_Ecto-sp13_S_contig7094.18179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4163bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7094:33..4195- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCGCCCACCCCGTCCCCGGTGACCCCGTCCACCCCGGCGCCGGTCAC
CCCTCTTACGGAGCCCCCCACGGAGCCCGCCACGGAGCCCCCCACCGCGC
CGGCCACGCCCGCGCCGACGACCGCCGTCGCTGCTGCTGCGACCCCCGGC
CCTGTCGCCGCGTTGACGCCTACGGCGGCGCCGCAAGCCGCGGCGGCGGC
GGCGACGCCGGCGCCCGTTTTGGCGTCGCTGGCGCCGGTGGCGCCGCCGG
CGAACACCGCCACTGCCGCGCCTACTCTCCCCGCCGTCGGGAATGTGACG
ACTGAGACCCCGGTCGGCGGCGGTGGTAATAATTTGGCGGCGACGCCGTC
TCCCACGGTGCTGGTCTTGGTGAATAACACTCAGGCCCCAAGTTTTGATT
GTGAGTTTGTTTGTTGGTTTTTTGGATTGTAGGTGATCTTTTATTTCTGC
GAGTGTTTGATTTTTTTTTTTTTCTCCTTGTTGTTCTGTTGTCGTCGAGT
TGTGCAAGTCAGTTTCTCTCGTTGGTTTATCTCTGATTTTTTTTGGGGCT
TTTGTTGCTGCTGCTGCTGGCGTTCTCATTCATGGGAAGTGTGGGTTCGT
TGTGCTTTCTGGCGGGTGGCTGACTGACGCGGTGCTCGTGGGAGAGGTTG
ACTGCCCACCCCAGCGCCTGCGGAGATAATGATCGTGTCACGCGTAAGAA
ACGGGTGGTGGGAAGGGGTGCAGGGGATGATAACGCCAAGCCCTTGCGCC
GGGGGGGGGGGCACAATGGGGCGTCCAGACCATGTAAAAGCCGCGTCCAC
TTCGTGGCCCCCTCGGTGACTCGTTCTGTACTGCCTGTCGTGTAGAAAGG
TGTCGGCACGGCTCTGGACGGTTTCCGCCGTCTTCCCCCCGCGCAGGACA
TGCGACAGTTTCCGAAATCGCACATGTGTCTACGAGATTCGTTGTTTGCT
TGCTGCAAAGACACGCTTAGAAGTGCCGCAAGAGAGTGTTCGCATTTGTC
TCATGTTCTGTTTTTTATTCCGGAGTTCCGTTTTTTCCTGTCTGTAAACG
TGTCTGCCTGTTTACGCTGCACCGGCCTTTCACGCCCCTCACACGCTCGA
CGCTGACCTGCTTGTGCCCAACCCCCATGCACGTGCAGACGAAGACGAAG
ACGCCTGCATCCTTCCGGAGAGCAAACCTTGCACGGAAGCGACGTCGTTT
TCGAACACAAACGAAGGTATTGGGGACTACTACGAGCCGGCGTGCGAGCT
GGTTGAGGGGGAAGAGCAACTGGGCGGATGCAACGCCGGTGAGCCGTTTT
GGTGTACTGTCGGTTTGTGGGGGGTTTGTGCTCGTGCCTGGGTAAGGTAG
TGTCGTTTGTTGCCATTGGCTTGTTGGGATGTTGCGCTGTTGTTAACGTT
GCAGGCGCTGGACGATGGTTGACGTTGGCGTTGGTTGGGTGTTTCACTGG
CTGTTGCTGCGTGGCTGCATGACGGTTTTCGTTATCGTTGTCTTGGGTGA
GACATGATGGATGTTTTGCGCGGTATTGTTGTTGCGCTCCGTTGGTAGCG
TTGCCGTTGCTAGCGGTGCATCTCGCCGATGTTGCTTGCTACTGCTCGGC
GGCGCAGTTGTGTTGTGTCGAGTGCACCGCTCTCTATCTCTCTCTCTCTC
GGTCGCGACCACCTGTGAGTTACGTGCCTAACACCGGCATTCACCTGGCA
CTCGTGTGGAAGACGAGCGCGCTTTAGCTGTCGCCTACCTACCAGGGAAC
GCGCCCCCTTTTGCGTCCACCAGCCAGACGCTGGGGTCTCCACCCTGTCC
TGGACAAAATCACGCGTCTTGGCGAGAGGAGACAGACGCCTTGTTGGCGA
CATAACAAAAACGAAAACAACACGGTGATTTGAATGGTTGTTTTTTTGTG
CGTGTGTGTGTGCTTCTTTATTGTTAGCATCGACCGCACTAACCGATGAC
AATGCGTCACTCTCAGTGCGGTTAAAAACACAAATTGAATCTAAAAGGTG
ATTATGATGTGTGTGTGTGCGTTTGCGCAGACGCGTCGAGTCTCTGCCGC
ATGTGCTTCTTCAACACCCCTCTCTACGTGGAGAAACACCCGGACGAAGA
CCTGCCGGACTACCCGGATTGCCCGTGCTGCGTCCTGGACATTTACGAGC
AAGACGCGTTCAACCTGGACGGCCAGAGATGTGAGTCGATCACCGGGGGA
AACGAACGAAGCCGGTTTTGCGTTTTGCGTGTGATGTTGGCTCTCCATGG
GGCAGCGGGACAGGCTACCCGTGAGGCGGGTCGCGCGTGGGGCGGGTTAC
CGGTGGAGGGGCTACCTGGGGGACGGAATACACATGAGACGGGTTACCCG
TGGGACGGGTTTCCCCGTGGGGCGGATTGACCGTGGGATGGGTTACCTGG
GGGACGGAATACCCGTGGGACGGGTTAAGCGTGGGACATGGTTGCGGTGG
CAGATTCTTGGGTGTGTGGTGAGAATTGTGATGGATGCGTCAGGTGTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTCTATGTGGCTGTTAA
AACTCCCCTTTTTTATATCTTCTTNNNNNNNNNGGGGGGGGGGTCGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGAATTGTGGGGGGT
GGGGCGGGTGTTTTTTTTTTTTTTTTGTCGCCTTCTTTTTTTGTTGGCGA
GGTACGTATGAAAATTCCCCTTTTTGATGTATGATGCGGGCTCTTTGGCC
AATGCGTGGAACTCTCAGCGGTTCACGGCGTATTTCCTCATCGAATTCTA
TGTTTTCTCGCCCTTTGCGGCACATACATGTTAGCTGCGTGCCCTCTCAG
CTCTGGCTTGAGCGATGCTGCGCAGCTTCTCCGAGAAGAGAAAAAAGAAG
TCCTCTGGTAGAGACGTCCGGCTTCCGTTGAGGCACCTTCGCTGGTTATG
TCTTTGTGGGGCTTGCAAGGCTTCGAAGCACCCACCCCCTTGTCCCGACG
GACAAAGGCGAAAAAACTCGTTTCGGATCCTGGGTTTCCCTCTGCTTGCT
TCGGAACAAGTGGGTATGTTCGACTTGGCGGTAGCAGCAAGCACCCTTTT
GCGACTGCCACACCCCACAACAAACAAAGACGTCCATCGCTTGACATCGT
ATATGCAAATCTCATGCGGTAACGAGAACTTCAATTTCACACGTCTGTCA
TGAAGGAAACGGAAGACCAACCGTCTGCTGCCACGCTCTCGTATAACTCT
TTTTTTGTGCGCTTCATGAGGGAGATACACGAAGGTGCGAGGATGCTGTC
GTTGTTTGCCTACCTTTCGCCATATGGTTGACTGCCGTATCCCATTTACC
ACTCAATGACTGGCTTCACCCCCCCGTGTGCTACCTCCGCGCGTGCTGTG
CTGTCCCCGCCCCCCTCTCCGCGCACACCGTCTACCCCCCTGAAGGCGTA
AGCGCATCTCCCGCCCCTTCCACGCCCGCGCTCACGGAAATACCAGTAGG
GGAGATAGAACCGCGAAGTTTTGATGACATCAGCTTCGACGACGGGGGCT
GGGAAATGAACGCGGGAGAGGTTGCCGCTCTCTCCGCCCTGGGCCTGCTG
GCGACTCTGACATTTTTCCCGTTTTGCTCGAAATGATAGGAGCATAGTAA
CATTGTCATGATGGGCTGTTTTTTTCGTTTGTGCATGTTCCTGGTTGTCG
TATTAACACCGCGTCGTGTCGTGTTGTGTACACATTGGTGTCCGTTGGGT
GTGTTTGTAGCCGGCTGTCCGGTAATATTTGGTCGGTCGCGTTGTAAGGA
AGGTAGTTTGTTGGACGGACGGAAGGGAAACACTTGACGTGGGTGAAGGA
GCATTCTATTGCATCCGGGGGGGTAAACCGAACGCACGGGGCCGCTGTGC
GCGCGTGCTTGTTCAGTTTTCATGGACCGCGCTATACCAGCGGACGAGTT
AAAAAGACGCTAGTCTACAGGCGGGGATAATAAAATCGGTCAGCGCGCCT
TGTATATCACGGGCCCCCGTGTTTGTGGTTGTGTGGGTGTTGGCTTAGAA
TTGCGGCATTTTGTTCGACGTGGTACTGCTGTAGGTGTGCAAGTGTGTTC
CAGGTTTGATTCTTGCTGTCATACCTGCTTGTACTAGGGGTGCAGTTCTT
GAGGCGAGGGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7094:33..4195-

>mRNA_Ecto-sp13_S_contig7094.18179.1 ID=mRNA_Ecto-sp13_S_contig7094.18179.1|Name=mRNA_Ecto-sp13_S_contig7094.18179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7094:33..4195- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCGCCCACCCCGTCCCCGGTGACCCCGTCCACCCCGGCGCCGGTCAC
CCCTCTTACGGAGCCCCCCACGGAGCCCGCCACGGAGCCCCCCACCGCGC
CGGCCACGCCCGCGCCGACGACCGCCGTCGCTGCTGCTGCGACCCCCGGC
CCTGTCGCCGCGTTGACGCCTACGGCGGCGCCGCAAGCCGCGGCGGCGGC
GGCGACGCCGGCGCCCGTTTTGGCGTCGCTGGCGCCGGTGGCGCCGCCGG
CGAACACCGCCACTGCCGCGCCTACTCTCCCCGCCGTCGGGAATGTGACG
ACTGAGACCCCGGTCGGCGGCGGTGGTAATAATTTGGCGGCGACGCCGTC
TCCCACGGTGCTGGTCTTGGTGAATAACACTCAGGCCCCAAGTTTTGATT
ACGAAGACGAAGACGCCTGCATCCTTCCGGAGAGCAAACCTTGCACGGAA
GCGACGTCGTTTTCGAACACAAACGAAGGTATTGGGGACTACTACGAGCC
GGCGTGCGAGCTGGTTGAGGGGGAAGAGCAACTGGGCGGATGCAACGCCG
ACGCGTCGAGTCTCTGCCGCATGTGCTTCTTCAACACCCCTCTCTACGTG
GAGAAACACCCGGACGAAGACCTGCCGGACTACCCGGATTGCCCGTGCTG
CGTCCTGGACATTTACGAGCAAGACGCGTTCAACCTGGACGGCCAGAGAT
GCGTAAGCGCATCTCCCGCCCCTTCCACGCCCGCGCTCACGGAAATACCA
GTAGGGGAGATAGAACCGCGAAGTTTTGATGACATCAGCTTCGACGACGG
GGGCTGGGAAATGAACGCGGGAGAGGTTGCCGCTCTCTCCGCCCTGGGCC
TGCTGGCGACTCTGACATTTTTCCCGTTTTGCTCGAAATGA
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