mRNA_Ecto-sp13_S_contig7092.18178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7092.18178.1
Unique NamemRNA_Ecto-sp13_S_contig7092.18178.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7092.18178.1 vs. uniprot
Match: A0A6H5KVI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI4_9PHAE)

HSP 1 Score: 431 bits (1108), Expect = 1.260e-146
Identity = 268/296 (90.54%), Postives = 272/296 (91.89%), Query Frame = 1 
Query:    1 MASAAGGNVGWEDEGGRGPSPSRERVVDXXXXXXXXXXXXXXXXX---GGAEEFEGARSAGGAEVDDLMERFQRGGGELDLSQLGGGSSNGDYERRVSVSIAGAAEDIVAGWQAEDXXXXXXXXXXXXXXXXXXGGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYDCLKAHLTVSLEENRGGADAAAFGATPKKTGGDRPWGAASGPKTIADVVAXXXXXXXXXXXEMPSSEEGDREGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQSLMLMSTGERLRMARDALAERLK 879
            MA+AAGGNVGWEDEGGRGPSPSR  V DXXXXXXXXXXXXX       G AEEFEGA SA GAEVDDLMERFQRGGGELDLSQLGGGSSNGDYER++SVSIAGAAEDI AGWQAED  XXXXXXXXXXXXX    GKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYDCLKAHLTVSLEENRGGADAAAFGAT KKTGGDRPWGAASGPKTIADVVAXXXXXXXXX  EMPSS+EGD EGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQSLMLMSTGERLRMARDALAERLK
Sbjct:  205 MATAAGGNVGWEDEGGRGPSPSRRIVADXXXXXXXXXXXXXELFDNVTGSAEEFEGAGSASGAEVDDLMERFQRGGGELDLSQLGGGSSNGDYERQISVSIAGAAEDIAAGWQAEDDEXXXXXXXXXXXXXES--GKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYDCLKAHLTVSLEENRGGADAAAFGATAKKTGGDRPWGAASGPKTIADVVAXXXXXXXXXGGEMPSSDEGDGEGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQSLMLMSTGERLRMARDALAERLK 498
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BLAST of mRNA_Ecto-sp13_S_contig7092.18178.1 vs. uniprot
Match: D8LHT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT1_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.480e-133
Identity = 230/248 (92.74%), Postives = 236/248 (95.16%), Query Frame = 1 
Query:  196 MERFQRGGGELDLSQLGGGSSNGDYERRVSVSIAGAAEDIVAGWQAEDXXXXXXXXXXXXXXXXXXGGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYDCLKAHLTVSLEENRGGADAAAFGATPKKTGGDRPWGAASGPKTIADVVAXXXXXXXXXXXEMPSSEEGDREGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQSLMLMSTGERLRMARDALAERLKDNPLDVSDWRFSGQASSYGM 939
            MERFQRGGGELDLSQLGGGSSNGDYERR+SVSIAGAAEDIVAGW+AEDXXXXXXXXXXXXXXXX  GGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMY+CLKAHLTVSLEENRGGADAAAFGA  KKTGGDRPWGAASGP+TIADVV XXXXXXXXXXXE+P S+EGD EGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQSLMLMSTGERLRMARDALAERLKDNPLD S WRFS  ASS GM
Sbjct:    1 MERFQRGGGELDLSQLGGGSSNGDYERRLSVSIAGAAEDIVAGWEAEDXXXXXXXXXXXXXXXX--GGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYECLKAHLTVSLEENRGGADAAAFGAAAKKTGGDRPWGAASGPQTIADVVXXXXXXXXXXXXEVPPSDEGDGEGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQSLMLMSTGERLRMARDALAERLKDNPLDASVWRFSCLASSSGM 246
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7092.18178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVI4_9PHAE1.260e-14690.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHT1_ECTSI1.480e-13392.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7092contigEcto-sp13_S_contig7092:2401..5135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size942
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000340.1
Cds size942
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.4303994-CDS-Ecto-sp13_S_contig7092:2400..24631681463972.4303994-CDS-Ecto-sp13_S_contig7092:2400..2463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7092 2401..2463 -
1681463972.44202-CDS-Ecto-sp13_S_contig7092:2576..26451681463972.44202-CDS-Ecto-sp13_S_contig7092:2576..2645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7092 2577..2645 -
1681463972.4536443-CDS-Ecto-sp13_S_contig7092:3239..35581681463972.4536443-CDS-Ecto-sp13_S_contig7092:3239..3558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7092 3240..3558 -
1681463972.4623232-CDS-Ecto-sp13_S_contig7092:4644..51351681463972.4623232-CDS-Ecto-sp13_S_contig7092:4644..5135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7092 4645..5135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7092.18178.1prot_Ecto-sp13_S_contig7092.18178.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7092 2401..5135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7092.18178.1

>prot_Ecto-sp13_S_contig7092.18178.1 ID=prot_Ecto-sp13_S_contig7092.18178.1|Name=mRNA_Ecto-sp13_S_contig7092.18178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=314bp
MASAAGGNVGWEDEGGRGPSPSRERVVDDDDDDDDDELFDDDDVTGGAEE
FEGARSAGGAEVDDLMERFQRGGGELDLSQLGGGSSNGDYERRVSVSIAG
AAEDIVAGWQAEDDEEEEEEGEEEDDDEDEEGGKAKGLGDLLWGHEAYES
DGFDSSLEDQVEAMYDCLKAHLTVSLEENRGGADAAAFGATPKKTGGDRP
WGAASGPKTIADVVAAAAAAAGSSGGEMPSSEEGDREGQYLWGCTSPQEE
REQLVSFASLGCFDPSARLQSLMLMSTGERLRMARDALAERLKDNPLDVS
DWRFSGQASSYGM*
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mRNA from alignment at Ecto-sp13_S_contig7092:2401..5135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7092.18178.1 ID=mRNA_Ecto-sp13_S_contig7092.18178.1|Name=mRNA_Ecto-sp13_S_contig7092.18178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7092:2401..5135- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCAGCAGCCGGGGGTAACGTGGGGTGGGAAGACGAAGGCGGGAG
GGGGCCGTCGCCTTCTCGAGAAAGAGTGGTTGACGACGACGATGACGACG
ATGATGATGAGCTGTTTGATGATGATGACGTCACGGGGGGCGCGGAGGAG
TTCGAAGGAGCGCGGAGCGCTGGCGGCGCCGAGGTTGACGATCTCATGGA
GAGATTCCAACGAGGCGGTGGCGAGCTGGACCTAAGCCAGCTGGGCGGCG
GTAGCAGCAACGGGGATTACGAAAGACGAGTATCTGTGTCGATAGCGGGA
GCGGCGGAGGACATCGTCGCCGGGTGGCAGGCGGAGGACGATGAGGAAGA
GGAGGAGGAGGGCGAGGAGGAAGATGATGATGAGGATGAGGAGGGTGGGA
AAGCAAAGGGGCTGGGGGACTTGCTGTGGGGGCATGAGGCATACGAGAGC
GACGGCTTCGACTCCAGTCTAGAGGACCAGGTCGAAGCCATGTGAGTTGG
TTTGCTGCCCGCCCATGCTACCCTCTTCAGAGCATGCGAAATATCAAGTA
GAAGATGTAGTTGGTCACATGCCTTCTTGTTTTCGAGGAGGTTTTCTTCA
CATCCGTTCCAGGTTTGTTGGAGCCCCGAGTATGCCTAGATCGGTTGGGA
CTGAAACGAGCTTCGGCAATGTTTCTCAGCTCGCAAAGATACTTATACAC
GGACCTGCGTAGGTCCTCTATTATTTCGAGCGCGTCTACACGGAGTATGT
TGAATGCCTCGCTCGCCGCTGCCCGACCTGCGGGGAAATCATATAAAAAA
GTAAAAGAATGACATTCTTCTCTACATGGACCGATTTGCACAACGTTACT
CAACGTACGCCAGTAGCACAGGTAACTGCAAGGCACGGCGCTCCCATAAA
GTAGACAGCCGTGGGCACTCTTTCATTGGCGACCCCTTTCTCTGCACCTG
ACTAGGTAGCGCATGAACAGACGGTCGTAGCGTACATGACACACGAGAAA
GAGTCTTGGTCTTTTCTAACCCCATATCTCTGGTTGATGCTCTTGCGATC
TCCTCCAACGTGCATCAACCCCTAACCTCAGGCGTGACTCCCTTTGATCT
TTTGGTTGATGCTCTTGCAATCTCCTTCAACGCGCAGCAACCCCTTACCA
CTGGCGTGACTCCCTTTGATCTTTTGGTTGATGCTCTTGCAGTCTCCTTC
AACGCGCAGCAACCCCCAACCTCAGGCGTGACTCCCTTTGATCTTTTGGT
TGATGCTCTTGCGATCTTCTCCAACGTGCATCAACCCCTAACCACTGGCG
TGACTCCCTTTGATCTTTTGGTTGATGCTCTTGCAATCTCCTTCAACGCG
CAGCAACCCCTAACCACTGGCATGACTCCCTTTGATCTTTTGGTTGATGC
TCTTGCGATCTCCTTCAACGCGCATCAGCCCCTAACCACTGGCGTGACTC
CCTTTGATCTTTTGGTTGATGCTCTTGCAATCTCCTTCAACGCGCAAACA
ACCCCTAAGCGCAGGCACGACTCCCTTCCATTTCTTGGTTGGTGTTTTTG
CAATCTCCTTCAACGCGCGCTTACCAGGTACGATTGTCTGAAGGCGCACC
TTACGGTGAGCCTGGAGGAGAACAGAGGCGGGGCAGACGCGGCCGCTTTC
GGCGCCACCCCCAAGAAGACGGGCGGGGACCGACCGTGGGGCGCCGCGAG
CGGCCCCAAAACCATCGCCGACGTGGTCGCGGCAGCAGCAGCAGCCGCGG
GGTCGTCGGGCGGGGAGATGCCCTCCTCTGAAGAGGGGGACCGGGAGGGG
CAGTACCTGTGGGGGTGTACCTCGCCGCAGGAGGAGCGGGAGCAGCTCGT
GTCGTTCGCGTCCCTCGGGTGCTTTGATCCGAGTGCTCGCCTGCAGGTGA
GAGGCTTTACCTTGGTTGCCTCTGTCGTTTTTTTTCTTTTGGGACTGGTC
GTGTTTTTTTTTTTTTTCCGGTGGTTAATTGGCTTAACTGCTCGGTCTCG
ATGAAGACCCCGTAAACACGCCTCCTTCCGTGCGCCATGACGATCCGCAC
CACGCGCTCGTTTTGGGATGCATCCAGGGGATCGGAATACTATGCCCGCT
CGTTGATTGGTTGGCGGCAGCTGTACCACGCCGCTCTTCTCCTTGACCCC
CTCTGTCGGTGTGTCTCGCCCCGCGACATTCATTCCGCTGTGTGCCTATG
TAGCTGTTATTGGTTGCAGATTGGCGTTTTTGTTTCTGTAGGCCGCCTGG
GGCCGAGTTTGTATCAGCAATGATCGATGAAGTGTTTCCGATCCGAACAA
AAAAGCATCTTGGAAGTGTCACGGTTTTTGTGATGGCAGCCTGAATTTGC
ATCTCGTGCACGTCGATGTGGTGGGTGTTCTTCGCACTGTAAATCCTAGT
CCTTCTCGGTGATAATCATTGGTGCATGTCTAAGTTGCCGCCTCTCCGAC
TGCCGTATTGATTGTCGCACGCTGGCGCTGCTAAGTGCAGTCACTGATGC
TCATGTCGACCGGAGAAAGGCTGCGGATGGCACGAGACGCATTAGCAGAA
CGTCTCAAGGTGCTTGTGGCTAAGAGTGCTCTCAGCCAACTAGGAGACTG
ATGCCTCGAGAGTTCTGTGCTGGCGATCGTCTGACTTTTCCCATCGTGTT
GGGAAAGTGTAACCCTCCACAGGACAACCCGCTTGATGTAAGCGATTGGA
GATTCTCCGGCCAGGCTTCATCGTACGGGATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7092:2401..5135-

>mRNA_Ecto-sp13_S_contig7092.18178.1 ID=mRNA_Ecto-sp13_S_contig7092.18178.1|Name=mRNA_Ecto-sp13_S_contig7092.18178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7092:2401..5135- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCAGCAGCCGGGGGTAACGTGGGGTGGGAAGACGAAGGCGGGAG
GGGGCCGTCGCCTTCTCGAGAAAGAGTGGTTGACGACGACGATGACGACG
ATGATGATGAGCTGTTTGATGATGATGACGTCACGGGGGGCGCGGAGGAG
TTCGAAGGAGCGCGGAGCGCTGGCGGCGCCGAGGTTGACGATCTCATGGA
GAGATTCCAACGAGGCGGTGGCGAGCTGGACCTAAGCCAGCTGGGCGGCG
GTAGCAGCAACGGGGATTACGAAAGACGAGTATCTGTGTCGATAGCGGGA
GCGGCGGAGGACATCGTCGCCGGGTGGCAGGCGGAGGACGATGAGGAAGA
GGAGGAGGAGGGCGAGGAGGAAGATGATGATGAGGATGAGGAGGGTGGGA
AAGCAAAGGGGCTGGGGGACTTGCTGTGGGGGCATGAGGCATACGAGAGC
GACGGCTTCGACTCCAGTCTAGAGGACCAGGTCGAAGCCATGTACGATTG
TCTGAAGGCGCACCTTACGGTGAGCCTGGAGGAGAACAGAGGCGGGGCAG
ACGCGGCCGCTTTCGGCGCCACCCCCAAGAAGACGGGCGGGGACCGACCG
TGGGGCGCCGCGAGCGGCCCCAAAACCATCGCCGACGTGGTCGCGGCAGC
AGCAGCAGCCGCGGGGTCGTCGGGCGGGGAGATGCCCTCCTCTGAAGAGG
GGGACCGGGAGGGGCAGTACCTGTGGGGGTGTACCTCGCCGCAGGAGGAG
CGGGAGCAGCTCGTGTCGTTCGCGTCCCTCGGGTGCTTTGATCCGAGTGC
TCGCCTGCAGTCACTGATGCTCATGTCGACCGGAGAAAGGCTGCGGATGG
CACGAGACGCATTAGCAGAACGTCTCAAGGACAACCCGCTTGATGTAAGC
GATTGGAGATTCTCCGGCCAGGCTTCATCGTACGGGATGTAG
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