mRNA_Ecto-sp13_S_contig709.18174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig709.18174.1
Unique NamemRNA_Ecto-sp13_S_contig709.18174.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig709.18174.1 vs. uniprot
Match: A0A6H5KKT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT2_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 4.480e-85
Identity = 296/346 (85.55%), Postives = 298/346 (86.13%), Query Frame = 1 
Query:    1 MFALRSSPSSLVCDIRDGWAATSTAVLPAPRPRRASVRLIYPQYDSPPAXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPVAAMAAEKXXXXXXXXXXXXXXXXXXXXXSREWRDGDXXDGLAGISRGQHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFLFDMEGLKETTFEDQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPA-EVKGRNNGDASCRGIVPQQQEGTPPRTAAGRGLSPAAAPGGGGAAREVSYAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC 1035
            MFALRSSPSSLVCDIRDGWAATSTAVL APRPRRASVRLIYPQYDSPPAXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAP AAM    XXXXXXXXXXXXXXXXXXXXX        XX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   FDMEGLKETT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EV+GRNN  A CRG+VPQQQEGT  RTAAGRGLSPA A  G GAA EVS AGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPQYDSPPAXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPAAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDMEGLKETTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEGRNNAGAPCRGVVPQQQEGTTARTAAGRGLSPAEAAAG-GAACEVSCAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC 345
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BLAST of mRNA_Ecto-sp13_S_contig709.18174.1 vs. uniprot
Match: D8LHJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ3_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.050e-35
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 MFALRSSPSSLVCDIRDGWAATSTAVLPAPRPRRASVRLIYPQYDSPPAXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQ 282
            MFALRSSPSSLVCDIRDGWAATSTAVL APRPRRASVRLIYP YDSP  XXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQ
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPXXXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig709.18174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKT2_9PHAE4.480e-8585.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHJ3_ECTSI1.050e-3595.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig709contigEcto-sp13_S_contig709:6517..7556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1040
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002120.1
Cds size1038
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.0006223-UTR-Ecto-sp13_S_contig709:6516..65181681463972.0006223-UTR-Ecto-sp13_S_contig709:6516..6518Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig709 6517..6518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463972.0126817-CDS-Ecto-sp13_S_contig709:6518..75561681463972.0126817-CDS-Ecto-sp13_S_contig709:6518..7556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig709 6519..7556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig709.18174.1prot_Ecto-sp13_S_contig709.18174.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig709 6519..7556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig709.18174.1

>prot_Ecto-sp13_S_contig709.18174.1 ID=prot_Ecto-sp13_S_contig709.18174.1|Name=mRNA_Ecto-sp13_S_contig709.18174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
MFALRSSPSSLVCDIRDGWAATSTAVLPAPRPRRASVRLIYPQYDSPPAA
SADDRAAAAGGDDGGSVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMS
KEVVEVGQAGAPVAAMAAEKAAALVVEERRAFAAGGAAARDSREWRDGDD
DDGLAGISRGQHAAARSAAAMAAGGGVARREEDSLSCFEEEEDFLFDMEG
LKETTFEDQQENISNRRDSSGSSSMRSAAAAAADHHGYSRSGGWGTTTTA
AAAAAAAPAEVKGRNNGDASCRGIVPQQQEGTPPRTAAGRGLSPAAAPGG
GGAAREVSYAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC*
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mRNA from alignment at Ecto-sp13_S_contig709:6517..7556-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig709.18174.1 ID=mRNA_Ecto-sp13_S_contig709.18174.1|Name=mRNA_Ecto-sp13_S_contig709.18174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1040bp|location=Sequence derived from alignment at Ecto-sp13_S_contig709:6517..7556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGCCCTCCGTTCCTCTCCCTCCTCCCTGGTGTGCGACATTCGCGA
CGGCTGGGCCGCCACGTCCACCGCCGTGCTCCCGGCCCCGCGCCCGCGGC
GCGCCTCCGTCCGGCTCATCTACCCACAGTACGACTCTCCGCCGGCTGCG
TCCGCCGACGACCGAGCTGCTGCTGCCGGCGGAGATGACGGCGGCAGCGT
CAGCAGCGGCGGGAGGAGCGCCTTCTCTCCGGCCGTCTCTGACTACGCGG
GTGTGTTCGAGGCTGGCTTCGACCCCGCCCAGGTGAGGGCTTCGATGTCT
AAAGAGGTGGTTGAGGTTGGACAAGCGGGGGCGCCTGTTGCGGCGATGGC
AGCGGAGAAGGCTGCTGCTCTGGTGGTCGAGGAACGTCGAGCATTCGCGG
CCGGCGGCGCCGCCGCGCGAGACAGCAGGGAGTGGCGTGACGGCGACGAC
GACGACGGCTTGGCGGGAATCAGCCGCGGCCAGCACGCGGCGGCCCGCAG
CGCCGCAGCAATGGCTGCCGGAGGTGGTGTTGCTCGCCGGGAAGAGGACT
CCTTGTCCTGCTTCGAGGAGGAGGAAGACTTTCTGTTCGACATGGAAGGG
CTGAAGGAGACCACTTTTGAGGACCAGCAGGAGAACATTAGTAACCGCCG
CGACAGCAGTGGCAGCAGCAGCATGCGTTCCGCCGCCGCCGCCGCCGCTG
ATCATCATGGGTACAGCAGGAGCGGGGGTTGGGGTACGACTACGACAGCA
GCGGCGGCGGCGGCGGCGGCGCCTGCGGAGGTCAAAGGACGCAACAACGG
CGATGCCTCCTGCCGCGGTATTGTCCCGCAGCAGCAGGAGGGAACACCGC
CAAGAACCGCCGCCGGTCGCGGTCTATCTCCTGCCGCTGCTCCTGGGGGG
GGGGGGGCGGCACGCGAGGTGTCTTACGCCGGTTTCAAGGGCGCCGCGCT
GCTGCGCACGCCACGGGTGATCGCTCCCCGGGGGACGCGGTGCGTGACCG
GGGGGATGTACAGGCTGAGGCTCAGCACGTCGTGCTAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig709:6517..7556-

>mRNA_Ecto-sp13_S_contig709.18174.1 ID=mRNA_Ecto-sp13_S_contig709.18174.1|Name=mRNA_Ecto-sp13_S_contig709.18174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig709:6517..7556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGCCCTCCGTTCCTCTCCCTCCTCCCTGGTGTGCGACATTCGCGA
CGGCTGGGCCGCCACGTCCACCGCCGTGCTCCCGGCCCCGCGCCCGCGGC
GCGCCTCCGTCCGGCTCATCTACCCACAGTACGACTCTCCGCCGGCTGCG
TCCGCCGACGACCGAGCTGCTGCTGCCGGCGGAGATGACGGCGGCAGCGT
CAGCAGCGGCGGGAGGAGCGCCTTCTCTCCGGCCGTCTCTGACTACGCGG
GTGTGTTCGAGGCTGGCTTCGACCCCGCCCAGGTGAGGGCTTCGATGTCT
AAAGAGGTGGTTGAGGTTGGACAAGCGGGGGCGCCTGTTGCGGCGATGGC
AGCGGAGAAGGCTGCTGCTCTGGTGGTCGAGGAACGTCGAGCATTCGCGG
CCGGCGGCGCCGCCGCGCGAGACAGCAGGGAGTGGCGTGACGGCGACGAC
GACGACGGCTTGGCGGGAATCAGCCGCGGCCAGCACGCGGCGGCCCGCAG
CGCCGCAGCAATGGCTGCCGGAGGTGGTGTTGCTCGCCGGGAAGAGGACT
CCTTGTCCTGCTTCGAGGAGGAGGAAGACTTTCTGTTCGACATGGAAGGG
CTGAAGGAGACCACTTTTGAGGACCAGCAGGAGAACATTAGTAACCGCCG
CGACAGCAGTGGCAGCAGCAGCATGCGTTCCGCCGCCGCCGCCGCCGCTG
ATCATCATGGGTACAGCAGGAGCGGGGGTTGGGGTACGACTACGACAGCA
GCGGCGGCGGCGGCGGCGGCGCCTGCGGAGGTCAAAGGACGCAACAACGG
CGATGCCTCCTGCCGCGGTATTGTCCCGCAGCAGCAGGAGGGAACACCGC
CAAGAACCGCCGCCGGTCGCGGTCTATCTCCTGCCGCTGCTCCTGGGGGG
GGGGGGGCGGCACGCGAGGTGTCTTACGCCGGTTTCAAGGGCGCCGCGCT
GCTGCGCACGCCACGGGTGATCGCTCCCCGGGGGACGCGGTGCGTGACCG
GGGGGATGTACAGGCTGAGGCTCAGCACGTCGTGCTAA
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