mRNA_Ecto-sp13_S_contig70892.18172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70892.18172.1
Unique NamemRNA_Ecto-sp13_S_contig70892.18172.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70892.18172.1 vs. uniprot
Match: D8LC74_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC74_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   49 YLFLEGPEEEEASFPPLESVRQMREICR 132
            ++  +GPEEEEASFPPLESVRQMREICR
Sbjct:  418 FVAAQGPEEEEASFPPLESVRQMREICR 445
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70892.18172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC74_ECTSI2.230e-682.14Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70892contigEcto-sp13_S_contig70892:39..170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.9419267-CDS-Ecto-sp13_S_contig70892:38..1701681463971.9419267-CDS-Ecto-sp13_S_contig70892:38..170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70892 39..170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70892.18172.1prot_Ecto-sp13_S_contig70892.18172.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70892 39..170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70892.18172.1

>prot_Ecto-sp13_S_contig70892.18172.1 ID=prot_Ecto-sp13_S_contig70892.18172.1|Name=mRNA_Ecto-sp13_S_contig70892.18172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
QLVSCRTFSAPISPCTYLFLEGPEEEEASFPPLESVRQMREICR
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mRNA from alignment at Ecto-sp13_S_contig70892:39..170-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70892.18172.1 ID=mRNA_Ecto-sp13_S_contig70892.18172.1|Name=mRNA_Ecto-sp13_S_contig70892.18172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70892:39..170- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTGTCAGTTGCCGTACGTTTAGTGCCCCTATATCACCATGTACGTA
CTTGTTTCTTGAGGGTCCCGAGGAAGAGGAAGCGTCGTTCCCGCCGCTGG
AGAGCGTACGCCAAATGAGGGAGATATGCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70892:39..170-

>mRNA_Ecto-sp13_S_contig70892.18172.1 ID=mRNA_Ecto-sp13_S_contig70892.18172.1|Name=mRNA_Ecto-sp13_S_contig70892.18172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70892:39..170- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTGTCAGTTGCCGTACGTTTAGTGCCCCTATATCACCATGTACGTA
CTTGTTTCTTGAGGGTCCCGAGGAAGAGGAAGCGTCGTTCCCGCCGCTGG
AGAGCGTACGCCAAATGAGGGAGATATGCCGT
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