mRNA_Ecto-sp13_S_contig7088.18170.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7088.18170.1
Unique NamemRNA_Ecto-sp13_S_contig7088.18170.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: D7FT00_ECTSI (Avl9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI)

HSP 1 Score: 753 bits (1944), Expect = 9.210e-264
Identity = 398/424 (93.87%), Postives = 405/424 (95.52%), Query Frame = 1 
Query:   73 AAPGSNSRRVTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGGKSVSHRGGASSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDDQGQPTLPLTTADIHVLRSDMPFKALPENGLAAAELSQGPSRTASSETEGGVWGWAKGWVMHSGEGGWAHGGDSARXXXXXXXXXXXGSRQHHGHCLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRSGCAGQLAALAADLRETRFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGTLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFA 1344
            AAPGSNSRRVTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGGKSVS+RGGASSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIED+QGQPTLPL+TADIHVLRSDMPFKALPENGLAAAELSQGPSRTA SE EGG+W WAKGWVM SGEGG AHG DS R           GS+QHHGHCLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRSGCAGQLAALAADLRETRFEDLGHSSVYQDLPVPTVLLKLR KLLAV+RLLLLEGRVLFCAKSAATVSEAVMAVASLLPG+LPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFA
Sbjct:    9 AAPGSNSRRVTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGGKSVSYRGGASSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDEQGQPTLPLSTADIHVLRSDMPFKALPENGLAAAELSQGPSRTAPSENEGGIWAWAKGWVMPSGEGGGAHGRDSGRGGDARGGGVG-GSQQHHGHCLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRSGCAGQLAALAADLRETRFEDLGHSSVYQDLPVPTVLLKLRSKLLAVLRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGSLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFA 431
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BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A6H5JK75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK75_9PHAE)

HSP 1 Score: 587 bits (1512), Expect = 2.990e-208
Identity = 319/340 (93.82%), Postives = 326/340 (95.88%), Query Frame = 1 
Query:    1 MEGFVEGDDPGDTPPPSAVTASTAAAPGSNSRRVTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGGKSVSHRGGASSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDDQGQPTLPLTTADIHVLRSDMPFKALPENGLAAAELSQGPSRTASSETEGGVWGWAKGWVMHSGEGGWAHGGDSARXXXXXXXXXXXGSRQHHGHCLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRSGCAGQLAALAADLRETRFEDLGHSSVYQ 1020
            MEGFVEGDDPGD PPP AVT STAAAPGSNS+R+TTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGG SVS+R G+SSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDDQGQPTLPLT ADIHVLRSDMPFKALPENGLAAAELSQGPSRTAS E+EGG+WGWAKGWVM SGEGG AHGG    XXXXXXXXXXX SRQHHGHCLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDR+GCAGQLAALAADLRETRFEDLGHSSVYQ
Sbjct:    1 MEGFVEGDDPGDAPPPPAVTPSTAAAPGSNSKRLTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQGRSSPSNGSGSSQRSGLGGISVSYRAGSSSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDDQGQPTLPLTAADIHVLRSDMPFKALPENGLAAAELSQGPSRTASPESEGGIWGWAKGWVMPSGEGGGAHGGXXXXXXXXXXXXXXXXSRQHHGHCLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRNGCAGQLAALAADLRETRFEDLGHSSVYQ 340
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A835Z636_9STRA (Avl9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z636_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.310e-53
Identity = 139/361 (38.50%), Postives = 183/361 (50.69%), Query Frame = 1 
Query:  358 PMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDDQGQPTLP---------LTTADIHVLRSDMPFKALPENGLAAAELSQGPSRTASSETEGGVWGWAKGWVMHSGEGGWAHGGDSARXXXXXXXXXXXGSRQHHGHCLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRSGCAGQLAALAADLRETRFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGTLPLGLGRLD------------------PPGFGLKAYRWRKHGFPLKLFR-KEAPLEPLVVIAGAADVLAKDGFFAGKSS 1356
            P  A     PIALVA+ +F LR+GP LVC  P +                   L  A I++L    PFK+LPENGLAA +L  G                               GG   R                   C+F+LR  G+ LFG SHF+R++D    RG++Q A V L+R+P+ GL+LQRLHAFS +V+    C  QLA   A L    F +LG+S  +Q+LPV  +LL+L G +++++RL+LLEGRVL  ++S A  S A  A+ASLLPG L LGL                      P  F  +AYRWRK+GFPL +FR  E   EPL+V+A AA VL   GF AG ++
Sbjct:  141 PPAAYSAASPIALVAVTSFHLREGPTLVCAVPALNSGXXXXXXXXXXXXVPAALRAAAINLL----PFKSLPENGLAATQLLGG-------------------------------GGGEDR-------------------CMFVLRAGGDVLFGASHFVRLQDETESRGFSQAAVVVLARVPYLGLLLQRLHAFSTEVLHTKDCQQQLARFHASLTRISFGELGYSLAFQELPVARLLLQLGGHVMSLLRLVLLEGRVLLRSRSGARASAAAFAIASLLPGCLALGLAPQGGSGXXXXXXXXXTADTPRPAAFEARAYRWRKYGFPLAVFRGTEVRFEPLLVMAEAAAVLRARGFLAGTTN 447
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A7J6NLN4_PEROL (UDENN domain-containing protein n=9 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NLN4_PEROL)

HSP 1 Score: 89.7 bits (221), Expect = 3.150e-15
Identity = 67/205 (32.68%), Postives = 105/205 (51.22%), Query Frame = 1 
Query:  775 GENLFGMSHFLRV-------EDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRS--GCAGQLAALAADL-RETRFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAV-ASLLPGTLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFAGKSS 1356
            GE +FG+S + RV       +D D  RGY Q A V LS++PFFG +LQR+    +    +   G    L  +   L R T+++++    +++ + V +++  L  KL  +V+ ++LE RV+  +  A   S  V+A+ A L PG   LG    + PGFG  +Y  ++HG PL LF    PL   V +    D+    GF  G S+
Sbjct: 1140 GELMFGVSIYYRVPASRLIHKDKDVTRGYVQKAVVVLSKVPFFGNLLQRVECIIVSYFQQMDFGDVAILQTMVKQLDRTTQWQNMSPYELHRGIDVVSLIRALDDKLWWIVKAVMLERRVIVYSSKARVASSTVLAILACLPPGQNYLGF---NSPGFGAPSYTLKRHGLPLCLFNGRCPLYTYVSLELMDDLYQCRGFLIGTSN 1341
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A7J6MFH5_PEROL (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MFH5_PEROL)

HSP 1 Score: 89.7 bits (221), Expect = 3.190e-15
Identity = 67/205 (32.68%), Postives = 105/205 (51.22%), Query Frame = 1 
Query:  775 GENLFGMSHFLRV-------EDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRS--GCAGQLAALAADL-RETRFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAV-ASLLPGTLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFAGKSS 1356
            GE +FG+S + RV       +D D  RGY Q A V LS++PFFG +LQR+    +    +   G    L  +   L R T+++++    +++ + V +++  L  KL  +V+ ++LE RV+  +  A   S  V+A+ A L PG   LG    + PGFG  +Y  ++HG PL LF    PL   V +    D+    GF  G S+
Sbjct:  273 GELMFGVSIYYRVPASRLIHKDKDVTRGYVQKAVVVLSKVPFFGNLLQRVECIIVSYFQQMDFGDVAILQTMVEQLNRTTQWQNMSPYELHRGIDVVSLIRALDDKLWWIVKAVMLERRVIVYSSKARVASSTVLAILACLPPGQNYLGF---NSPGFGAPSYTLKRHGLPLCLFNGRCPLYTYVSLELMDDLYQCRGFLIGTSN 474
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A813G9C3_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G9C3_POLGL)

HSP 1 Score: 89.0 bits (219), Expect = 5.030e-15
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 1 
Query:  772 SGENLFGMSHFLRV-------EDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRSG--CAGQLAALAADLRETRFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGTLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFAGKSSR 1359
            +G+ L+G+S   RV        D    R   Q A   LSR PFFGL+ QRL   +    ++    C   L+   A L    FE L  S ++  L    +   LR +LLAV++ +LLE +V+  + SA   S AV+ + SLLPG L L     +  G G + +++RKHG P++ F     + P + +     +L   GF  G +++
Sbjct:  253 NGQILYGVSCHRRVGVADLLHRDASVSRSSVQKAVCVLSRCPFFGLIQQRLSPVTQVFFEQRDFRCTALLSDFQAQLDAVPFEKLPESELFHGLDHSHLFFSLRYQLLAVLKAILLEAKVMVYSPSAEAASSAVLCLLSLLPGALWLSF---NSDGLGSRHFQFRKHGLPIQCFGPRCCVYPYLGLQMLDRLLQMRGFLVGTTNK 454
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A7J6M719_PEROL (UDENN domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M719_PEROL)

HSP 1 Score: 85.5 bits (210), Expect = 6.220e-14
Identity = 68/209 (32.54%), Postives = 105/209 (50.24%), Query Frame = 1 
Query:  775 GENLFGMSHFLRV-------EDPDSPRGYTQGAAVCLSRLPFFGLVLQRLHAF------SMDVIDRSGCAGQLAALAADL-RETRFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAV-ASLLPGTLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFAGKSS 1356
            GE +FG+S + RV       +D D  RGY Q A V LS++PFFG +LQR+          MD  D       L  +   L R T+++++    +++ + V +++  L  KL  +V+ +++E RV+  +  A   S  V+A+ A L PG   LG    + PGFG  +Y  ++HG PL LF    PL   V +    D+    GF  G S+
Sbjct:  272 GELMFGVSIYYRVPASRLIHKDKDVTRGYVQKAVVVLSKVPFFGNLLQRVECIIGSYFQQMDFED----VAILQTMVKQLNRTTQWQNMSPYELHRGIDVVSLIRALDDKLWWIVKAVMVERRVIVYSSKARVASSTVLAILACLPPGHNYLGF---NSPGFGAPSYTLKRHGLPLCLFNGRCPLYTYVSLELMDDLYQCRGFLIGTSN 473
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A024U3L8_9STRA (UDENN domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3L8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.130e-8
Identity = 55/181 (30.39%), Postives = 88/181 (48.62%), Query Frame = 1 
Query:  832 RGYTQGAAVCLSRLPFFGLVLQRLHAFSMDVIDRS--GCAGQLAALAADLRETRFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGTLPLGLGRLDPPGFGLK---AYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKD----GFFAG 1347
            RG  Q + V LS+ P+   V+ +L + +     +   G  G +  L   L     E L    ++  LP+ T++  +   L+ ++RLLL+EGR++  ++S   VS +V+A  SLLPG +         P + +     YRW K+GFPL L      +EP +V   AA +L +     GF  G
Sbjct:  108 RGAIQKSVVVLSKTPYQAYVMVKLDSMARQFFSQVSFGDFGLVVELHDALCSVDMESLSWPQLHIGLPLQTLVRAMDVHLIGLLRLLLVEGRIVMYSQSPQVVSSSVLAFVSLLPGGIQ--------PTYAIPHAHRYRWAKYGFPLALVHPTFAVEPYLVSPCAASMLQQPANQGGFLVG 280
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A4D9D2M4_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.470e-8
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1 
Query: 1018 QDLPVPTVLLKLRG--KLLAVVRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGTLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEA-PLEPLVVIAGAADVLAKD-GFFAGKSS 1356
            +D+PV   L+KL G   +L +V+LLLLEGR+LF +      S AV+A+ +L+PG     L   + P   L+ YRW K G PL++F ++   L+PL+VI+ A     K+ GF  G S+
Sbjct:  264 RDVPV-LWLVKLLGIEHVLGLVKLLLLEGRILFYSSKPYKSSSAVLALLTLIPGLYTQALEYEEGPLRALRGYRWSKFGMPLRIFHEDKFVLQPLLVISKATSFFDKNPGFLVGTSN 379
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Match: A0A5D6YMZ8_9STRA (Avl9 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YMZ8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.370e-7
Identity = 42/124 (33.87%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:  985 RFEDLGHSSVYQDLPVPTVLLKLRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGTLPLGLGRLDPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFAGKSS 1356
            RFE+L +  ++  LPV  ++ ++   L+AV+R+LLLEGRV+  + S +  S A +A+ +LLPG L                YR R++G P  L  K+  L+P         V A  GF  G S+
Sbjct:  236 RFEELPYRELFAGLPVVPLVRRMAKDLVAVLRVLLLEGRVVCFSSSPSLASSATLALLALLPGELSSANADFSSRTIQAVVYRLRRYGLPFALASKDFVLQPCFTSEQEDAVYAARGFLLGTSN 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7088.18170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FT00_ECTSI9.210e-26493.87Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JK75_9PHAE2.990e-20893.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z636_9STRA1.310e-5338.50Avl9 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7J6NLN4_PEROL3.150e-1532.68UDENN domain-containing protein n=9 Tax=Perkinsus ... [more]
A0A7J6MFH5_PEROL3.190e-1532.682-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A813G9C3_POLGL5.030e-1531.71Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7J6M719_PEROL6.220e-1432.54UDENN domain-containing protein n=1 Tax=Perkinsus ... [more]
A0A024U3L8_9STRA1.130e-830.39UDENN domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A4D9D2M4_9STRA8.470e-840.17UDENN domain-containing protein n=2 Tax=Monodopsid... [more]
A0A5D6YMZ8_9STRA3.370e-733.87Avl9 domain-containing protein n=1 Tax=Pythium bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7088contigEcto-sp13_S_contig7088:842..7696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score758.8
Seed ortholog evalue1.4e-216
Seed eggNOG ortholog2880.D7FT00
Model size1362
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
Ec32 ortholog descriptionAVL9/DENND6 domain
Ec32 orthologEc-24_004260.1
Cds size1362
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7088.18170.1prot_Ecto-sp13_S_contig7088.18170.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7088 842..7696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.7406852-CDS-Ecto-sp13_S_contig7088:841..11071681463971.7406852-CDS-Ecto-sp13_S_contig7088:841..1107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 842..1107 +
1681463971.7552013-CDS-Ecto-sp13_S_contig7088:1616..17721681463971.7552013-CDS-Ecto-sp13_S_contig7088:1616..1772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 1617..1772 +
1681463971.7663827-CDS-Ecto-sp13_S_contig7088:2472..26081681463971.7663827-CDS-Ecto-sp13_S_contig7088:2472..2608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 2473..2608 +
1681463971.7777212-CDS-Ecto-sp13_S_contig7088:3095..33531681463971.7777212-CDS-Ecto-sp13_S_contig7088:3095..3353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 3096..3353 +
1681463971.788544-CDS-Ecto-sp13_S_contig7088:4226..43421681463971.788544-CDS-Ecto-sp13_S_contig7088:4226..4342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 4227..4342 +
1681463971.7991915-CDS-Ecto-sp13_S_contig7088:5494..55821681463971.7991915-CDS-Ecto-sp13_S_contig7088:5494..5582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 5495..5582 +
1681463971.8087296-CDS-Ecto-sp13_S_contig7088:5845..59691681463971.8087296-CDS-Ecto-sp13_S_contig7088:5845..5969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 5846..5969 +
1681463971.8192017-CDS-Ecto-sp13_S_contig7088:6571..66991681463971.8192017-CDS-Ecto-sp13_S_contig7088:6571..6699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 6572..6699 +
1681463971.829695-CDS-Ecto-sp13_S_contig7088:7606..76961681463971.829695-CDS-Ecto-sp13_S_contig7088:7606..7696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7088 7607..7696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7088.18170.1

>prot_Ecto-sp13_S_contig7088.18170.1 ID=prot_Ecto-sp13_S_contig7088.18170.1|Name=mRNA_Ecto-sp13_S_contig7088.18170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=454bp
MEGFVEGDDPGDTPPPSAVTASTAAAPGSNSRRVTTRAGTGTAASLAGMV
AARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQGRSSPSNGSGSS
QRSGLGGKSVSHRGGASSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVD
PPIEDDQGQPTLPLTTADIHVLRSDMPFKALPENGLAAAELSQGPSRTAS
SETEGGVWGWAKGWVMHSGEGGWAHGGDSARGGDARGGEGVGGSRQHHGH
CLFMLRVSGENLFGMSHFLRVEDPDSPRGYTQGAAVCLSRLPFFGLVLQR
LHAFSMDVIDRSGCAGQLAALAADLRETRFEDLGHSSVYQDLPVPTVLLK
LRGKLLAVVRLLLLEGRVLFCAKSAATVSEAVMAVASLLPGTLPLGLGRL
DPPGFGLKAYRWRKHGFPLKLFRKEAPLEPLVVIAGAADVLAKDGFFAGK
SSR*
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mRNA from alignment at Ecto-sp13_S_contig7088:842..7696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7088.18170.1 ID=mRNA_Ecto-sp13_S_contig7088.18170.1|Name=mRNA_Ecto-sp13_S_contig7088.18170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7088:842..7696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGGTTCGTGGAGGGGGATGACCCTGGAGACACCCCTCCTCCTTC
TGCCGTTACTGCTTCCACGGCAGCTGCTCCTGGCAGCAATAGTAGGAGGG
TTACCACCAGAGCCGGCACAGGCACTGCGGCTAGCCTTGCCGGCATGGTG
GCGGCGAGGTCATCAGGGGCCGCCGACGGCATCAGCCCCGTGCACGGCGC
GTACGGACTGGCCATCGAGGAGGAGGTCGAGGACCTACTCTCCAGCCACA
TGAAGTTCATGCAGGGGTAAGAGTTTTTTAGATTGCATGAAGTTCATGCT
GGGGTGATCGTTCTTTTTTTCCGAGATCACATCAAGTTCATAGAGGGGTG
AGAGTTCTTATTGTTCTTCGTAGATGAAGTGAAGTTTATCCTGGGGTGGT
GTTTTTTTTTTTCGGAATAACCGTTGGTTGTTGGTTGTAGTCCTATAACC
CTACTACTCGACGGCAAGACCGTTCTCAGTCAGCGTTTTTCAACGCCCAA
GGTTACGATGACGGAGTAGAAGCAGCAGCAGCAGCAGCAGCAGGAGAACT
GCACCCTGTTTCATGTAACAGTCTCACCCACGCTCTCTCAAGTAGCAAAA
GAATGACACCCTCCCGGCTGACACCAGAACGACACCCTGGTGACAAATGT
CTCGCCCACACCTTTTTCAAATTCGGCCAAATGCCTCGCCCTATCGCTGC
CTACTCCACCCTCTCCTAACCCTCCCCTACCCCTCCCTCCCCTCCCCTCC
CCCCCCCTTACCCTAACCCTGGCAGGAGGTCTAGCCCTTCGAACGGGTCG
GGTTCGTCACAGCGGTCGGGGTTGGGGGGGAAATCGGTCTCCCACCGGGG
GGGAGCCTCGTCAAAACCGATGGACGCGAGGCAGGGGGAGATGCCTATTG
CGTTGGTAGCCATCGTGACGTTTGATTTAAGGTGGGGAGTGAGGGAGGCG
GTGGGAAATTTCCTTGTTGGAGGAGGCGGGTAGCGAACGATTGGTTGTCG
TTAGTTTTCGTGTCACTGGGTGGTGGCTATCCCGCCGAAGCTCTTGTGCA
TGAGGAGGGGGAGGGAGTGATGTGTGTGTGTTTGGCGGTATTTGTTTCGA
GGTGAGCGAGGTGGTGGATTCGGTATCCAATTGCTTTCTTTGGTCCCTTC
AATAGCCCCCTCATCTTTGTCGCATCACCAGAGCAAGCGCTTTGCCCCAA
GCCTTTGCTTTAGACATCGTGCCATGCTACGCCGTGATTAGATGTATGCG
AGCGCCTCCTGTGTTGTGATATGGCGCGGTTGATCATTCGCTGATGTGAG
CTAACACCATACCCACCTCATACATGTGTGTTGCCGCGGCTCTTTTTTCT
GCTCGCCCTTGGATGTCTCCCGTCTATCCGTCGATATCACGTGCATCGTA
TTCTACGAAACCCACGTCCACCAGTACGACCAACACAACCACCAACACCA
ACACCACTACCAACGCCATCCATTCCAACGACAAACACCAACGACAAAAC
ACCACCAACACAAGAAGGCACCCGCAACCAAAACATCGATAAGAACAGGA
ACAGCACCAGCACCAGCACCAACCAAAGCATCGACAGCGACAACGATCCG
TCCGCCTTTCGTTTCGACTCTCCTGCTGCAGGCAAGGTCCCTGCCTGGTG
TGCGTGGACCCACCCATAGAGGACGACCAGGGACAGCCGACGCTCCCGCT
TACGACCGCTGACATCCACGTCCTTAGATCAGACATGCCCTTCAAGGCCC
TCCCTGAAAATGGCCTGGTAAGCCATGCTTATTGTCAAGCTCATCGCTGG
TGTAAGCCACCCTTGTGGTGGTAGGTCATGGTCATGATGATCTTTGTGGT
GAGGCGCAGGGGGTGCTTTGGGCGTGCTTTGATGTGAGGAGGCCCGTTGG
CGTGGAGGGCGGTGTAGATATTGCATACGTACGATAACGGCCATGCCAGT
GGCGGGGGAACAGTATCTGCATGGGGGGGGGGGGATAATCCTCTCATGGG
TCTGGTTCGTGGTTTTCATGGCATTGGTTTCGTAGAAGGTCTTGCAAAGG
TCAACTCGTGCAAAGATTTTGGCCACGAACGTCCGGAGGACACCTCAGTA
CGGTAAGGAGTAAACCTCAGTCGGGAAGGAGAAAACCTCAGTACGGAAAG
GAGAAAACCTTAGTGTGGACTCTGCGTGGGAGACAAGACTCCACAATGGT
TCGCCGCCGCGTCAAATTTCGTGCGTTTGTGACGCGCGTATTCTGACATC
ACAGGCAGCAGCCGAGCTCTCCCAGGGGCCGAGCCGCACCGCGTCGTCCG
AAACCGAAGGAGGGGTTTGGGGATGGGCCAAAGGCTGGGTCATGCATAGC
GGAGAAGGGGGGTGGGCACACGGAGGGGACAGCGCGAGGGGCGGCGACGC
GAGGGGAGGGGAGGGGGTAGGGGGGTCCCGGCAGCACCACGGGCACTGCC
TCTTCATGCTGAGGGTGTCCGGCGAGAACCTGTTCGGAATGAGCCACTTC
CTTCGTGTTGAGGTACCCAGAGACCATATCACGTCGTAGGCATGTATCAC
AAGGCTTGCATGCATGCGGGGCGGAGAGACATTGCACCGACGGAGTCACT
TTTTATTAACTGTTGTCGGAGAAGTCCTTGTGGAACCCTTGTTCCTCCTG
CCGAGAATCCTGTGATGTATGTTTAGGTGTGTTTTTGGGTTTGGTTCTTG
TTTTTCCCCGCTTTGGCCGTGTCCACCCTGTTTGACGGGGTTTTGAGCAT
CGTTTCTCCGCATATGCGGCAGTCAACCAAGCAGTCTTTGGTCGGGTTCC
TATTTCTTTCCATCTTTCTGGCTCTCTGGGTATCACCGTACATGCTTGTC
AGCAGGAGCCGCAAGGCATACCAGGGAGATTTTGTTTTGCTTGGATCGAA
TCCCTTCCCCCCACACACCTTGTAAACGGCCGTATGCATAAGAGACCTGG
GAAACCTTGTGTGGTACGGCACTGCCGTCGTATTAGAAGATCATCTTTGC
TTGGCGGTGGATGCTTGATTGTCCGTCCAAGGAAGGACAAGCAGGAAGTG
AAGCAGCCCCCCCTACCCCTAAACAGCGTCTGCTTGTGCGCGGGAAACTG
GTATTGTTCTAAAGACCACCCGACTCTTTTGTTTAGAACTACAGTTTTGC
GACGAACGCGGGTCAGCGCCCCTTTTTCCGTACTGTGTGCTTTTGCGGCG
GAAACCTATTATTTTCTCTGAAGACCGCGGCCACGCAAGATGATGAGTAC
AACCCCCTGCTGTTGCCTGGGCTGGCGAAAGCCCGGGATCAATGGGATGC
GAGGGTCTTTGATCTACCGGCTACGGCATTCACACACATGAGTGCCCCCC
CTCCCTGCTTGTTGTGGCTATATGAAAACCGCTAGGACCCCGACTCTCCT
CGCGGGTACACCCAGGGAGCCGCGGTGTGCCTGTCTCGCCTACCGTTTTT
CGGTCTGGTCCTCCAGAGACTGCACGCTTTCAGCATGGACGTCATTGACA
GGTAGGACATGATGCCAGCGGTGAATGAATTCGGTGGAGGATGCCAGCAG
TGAATGAATGCAGCATCAAATGTTTTCTCGTGTGGGAGAAGTCATTGGCC
CAGTGTTGCAGAGGCGAATTGCCGGCTTTGAGTGCAGGCTTTGTGAGCCG
GTGCAAAAGGCTGTCGATGGAGACATACCTTTTTTGTGCTAGGATGGCAA
TGCTCCCACCCGCCCTCTGATCGGCCATGTGAAACCCTTCGGGAGGGTGA
GAACGTGCATTGGCATATAATCCGAAGTGTTTCAGCAAACCAGTTATCGT
CAACTTGACTTGGCATTATTGTACTGCGGCATTGGCGAAAAGTAGCAGGT
ATTTACCAGTTATATTTTCGTAAAACGCAACGAAATGGGCGCCCCAAATT
TCTAGTTTTCCTCAAGCACAATTCCGTCAACGTTCGTCGAGCAAACGAGA
CTTGGCCGCCTTTTCCCTGAGGTCGACAGTGACCGTGGAATGAATGGCAG
TCGCCGCTTGATCGGAAACCTCAAATGCCTCCAGCTTGCCTCCACTAGTA
GCAGTGCAGCTTGAACCATTGGTAGAATCTAGTTTTTTTCTGCATGACTT
TTCTTGAGGGAGTGAAGGGGACTGAAGATGAGGCTCGAGCACGGGATTAT
GCATGGGCTGCTGAGAACTCGCACTGACGCAATTACGATATGGCTTTTGT
TGAAGGAGTGAAGGAGACTGGCGTAGATTCGCTAGCACGTGGTTCCATGG
CCACACGATAGATGTGACCGAGACATGCATGGAAATGGAAGATGACGTAC
TCACACAGTCAATTTGACCATGTACGTGCTGCTGCGGACTCGGCAATAAC
GCCATGACGCCATGACGCCATGGTGTTTCACCAGCACGTGATTTTGCATG
CCCTGCTGTGAACTTGCAATGACGCTATTACGCTATGACGCTATGGCGGT
TTGTGAACGTGGTGAAGGGGACGACACGTGTTTGCTGAACATGTAAGTAC
GCATGCGCTGCTGTTAACTCTTGGTGACGCGGTGACGCTTGTGACGTTTT
GGTGAGGCCTCAAGGGGACGGAAGATGACGTACTCACACAGTGGATGTGA
CGATGCATATGCTGCTGTGAATTCGCTTGGATCATGCTTCGACCTTCTCG
TAGGAGCGGGTGTGCCGGGCAGCTGGCAGCGTTGGCGGCAGACCTGAGGG
AGACACGCTTCGAGGACCTCGGCCACAGCTCCGTCTATCAGGTGTGAAGG
CAGTTGATGGTGGCTGCTACGGCTGTGGTTGACTTGATGGCTACTTCAGC
CTGGGCGACTGCCACAAGACTACCAGCATCGGCGTAGGAGTACTGCGTTA
GATGATGTGGCAGCAGAAAAACCGCAAGCTGGCTTTACACTTTGCATTGG
TCCTGCAGCACCCTTAGCCTTGTCGAGATATGCTAACGCCTTCCTTCCCT
GCCATTCTCTTGGTCTTGTCCTTTGCTCCTTGATTTACCCCCTCGTTTGG
AAAGGATTTGCCGGTGCCTACGGTCCTCCTCAAGCTCAGGGGCAAGCTGC
TGGCGGTGGTTCGCCTGCTGCTCCTCGAAGGGAGGGTCTTGTTCTGCGCC
AAGAGCGCAGCCACAGTATCGGAGGCCGGTGAGATTTTTTTTGTTTCGTT
TTGATTTCTTTTTTCGCGGGTGTTTCCGTTGCTTTTTCATGCATCCCTCT
CTTGGGTGAATTGAGTACTGCAAGAGGCAGAGATATGTCGTCCCTCCTCG
ACCGACTTTCTGGGCTTGATTGCTCCACAACCAAGATTGCGCTCACACCA
ATAATGGTGGTGCTGGAAGCACCTCGTGGAGGGCTTTCCGTAGACGTTTT
CGCGTGCCACTTGCTTGTGAAGCAATCTAGCTCTGGAAGTCTGTCTAGGG
GGTGTAACCCATCTCTCTCTCTCCGCCTTTTTCGGTATAGTCGTTCCATT
TGTTGTACATGGTTGTCTTGCGATGAATTGCGATTAATTGGTTTGTTTTC
TCTGCCAATATTCTAGCAGTGAAATCGGAAAAAGGGAGAAGTCCTGCACC
ACAGACAAAATCTTGCCCGTAGAATGTAGACTACATCACCACGATCTCCT
ACAACTTTTTTTCCCTGTACGTTCTCCTCTGGCAGTTGTTGTAAAAGGGA
AGGTCTACGTCATAATTACAGAATGTAGATTCGATGACGATTTCCCACAC
CTTTCATCCCCTCATGTTTGTGAATGCCAGTGATGGCGGTAGCGTCGTTG
CTGCCGGGAACTCTTCCCCTCGGGCTTGGTCGGTTGGACCCTCCCGGCTT
CGGGTTGAAGGCATACCGGTGGCGAAAGCACGGGTTTCCGCTAAAGCTGT
TCCGAAAGGTGAGGTGCATTCGTGCTGGATGATACCGTTGTCGTTGGTCG
ACCACCGTTTCCTTTCCTTAGTTTTTTTTTTTTCTTGGCTCAGAAGTCTC
GGCTGCTCGTGCACTCATTGATTTCGGCCTCGTCTGTCTCTTTAAGTGTC
CTCTTAGACTACCTACCCCTTTCCTATACCGTGTTGGTGGTTGTACCCGA
CTGCGTGCTTGGCGGTATCTAGAGACACAGATGAGGATTCTAGCGAGCGC
CAGAAGGTGCTTTGAGTCGGACCGCACGCGGGTGTGTTGTCGTCCACTGT
GGCTAGGATAGGAGAAATGAGCTCGTTAACGTTTGAGGGACAAGTACCTA
GCCCTCTTTTCGTGCTTTCGTGGGGTGGTCGCCTCTCTTGTTTCTCAATC
GAGCGTTGCGGACGGTTCCGCTGTTTCCTCCCTCCACTCTAATCGCTCGA
TCGAGCGTCGCGGACAGTTCCACTGTTTTTCCTTCAACTCTTGTTGCTCG
ATCGAGCGTTGGGGATAGTTCGAGTATCGTCTCCATCGAATTTTTGTTGC
TCGATCGAGTAGTGCGACTGTTTTCTCCCTCCTTCATTCGTGAGCCAGCG
TGCACCTGCTGCCGATTCAGCTGCGTATGGTACGTTTTTCATCGTGACAC
CTACAACCACTATCATGTAATACCTAGCCCGCTTGTCAGTTTTGGCGTGG
AAAATGCCCTCTAGCGGTCAAGCGTTGCGGACAGTTCGGGTGTTTTCTCC
CTCGAGTTTGTTGGTGAGCCAGCGTGCATCTGCTTCTGGTTCAGCTGTGA
ACTGGGTAGTCACAATCCTAATCTTTCTTGTGTCGCCAGAGGTGCCCGAT
TGCTTGTAAACGTGGCTGGTTTGATGTTGGTGTTGTCCTGCCTCGTGTTT
TTTTTTGTGCCGCAGGAAGCGCCGTTGGAACCGCTGGTGGTAATAGCGGG
AGCGGCGGATGTCTTGGCGAAGGACGGCTTTTTCGCAGGCAAGTCGTCCC
GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7088:842..7696+

>mRNA_Ecto-sp13_S_contig7088.18170.1 ID=mRNA_Ecto-sp13_S_contig7088.18170.1|Name=mRNA_Ecto-sp13_S_contig7088.18170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7088:842..7696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGGTTCGTGGAGGGGGATGACCCTGGAGACACCCCTCCTCCTTC
TGCCGTTACTGCTTCCACGGCAGCTGCTCCTGGCAGCAATAGTAGGAGGG
TTACCACCAGAGCCGGCACAGGCACTGCGGCTAGCCTTGCCGGCATGGTG
GCGGCGAGGTCATCAGGGGCCGCCGACGGCATCAGCCCCGTGCACGGCGC
GTACGGACTGGCCATCGAGGAGGAGGTCGAGGACCTACTCTCCAGCCACA
TGAAGTTCATGCAGGGGAGGTCTAGCCCTTCGAACGGGTCGGGTTCGTCA
CAGCGGTCGGGGTTGGGGGGGAAATCGGTCTCCCACCGGGGGGGAGCCTC
GTCAAAACCGATGGACGCGAGGCAGGGGGAGATGCCTATTGCGTTGGTAG
CCATCGTGACGTTTGATTTAAGGCAAGGTCCCTGCCTGGTGTGCGTGGAC
CCACCCATAGAGGACGACCAGGGACAGCCGACGCTCCCGCTTACGACCGC
TGACATCCACGTCCTTAGATCAGACATGCCCTTCAAGGCCCTCCCTGAAA
ATGGCCTGGCAGCAGCCGAGCTCTCCCAGGGGCCGAGCCGCACCGCGTCG
TCCGAAACCGAAGGAGGGGTTTGGGGATGGGCCAAAGGCTGGGTCATGCA
TAGCGGAGAAGGGGGGTGGGCACACGGAGGGGACAGCGCGAGGGGCGGCG
ACGCGAGGGGAGGGGAGGGGGTAGGGGGGTCCCGGCAGCACCACGGGCAC
TGCCTCTTCATGCTGAGGGTGTCCGGCGAGAACCTGTTCGGAATGAGCCA
CTTCCTTCGTGTTGAGGACCCCGACTCTCCTCGCGGGTACACCCAGGGAG
CCGCGGTGTGCCTGTCTCGCCTACCGTTTTTCGGTCTGGTCCTCCAGAGA
CTGCACGCTTTCAGCATGGACGTCATTGACAGGAGCGGGTGTGCCGGGCA
GCTGGCAGCGTTGGCGGCAGACCTGAGGGAGACACGCTTCGAGGACCTCG
GCCACAGCTCCGTCTATCAGGATTTGCCGGTGCCTACGGTCCTCCTCAAG
CTCAGGGGCAAGCTGCTGGCGGTGGTTCGCCTGCTGCTCCTCGAAGGGAG
GGTCTTGTTCTGCGCCAAGAGCGCAGCCACAGTATCGGAGGCCGTGATGG
CGGTAGCGTCGTTGCTGCCGGGAACTCTTCCCCTCGGGCTTGGTCGGTTG
GACCCTCCCGGCTTCGGGTTGAAGGCATACCGGTGGCGAAAGCACGGGTT
TCCGCTAAAGCTGTTCCGAAAGGAAGCGCCGTTGGAACCGCTGGTGGTAA
TAGCGGGAGCGGCGGATGTCTTGGCGAAGGACGGCTTTTTCGCAGGCAAG
TCGTCCCGGTGA
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