prot_Ecto-sp13_S_contig7087.18169.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7087.18169.1
Unique Nameprot_Ecto-sp13_S_contig7087.18169.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length308
Homology
BLAST of mRNA_Ecto-sp13_S_contig7087.18169.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE)

HSP 1 Score: 544 bits (1401), Expect = 4.220e-185
Identity = 276/296 (93.24%), Postives = 284/296 (95.95%), Query Frame = 0
Query:    1 MVYSRDRDMKAGFEATRILQEALGLVEKVEHVLGELEQGQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLEHFSELVACTTDEDARRQLVDDFRRNDGFRRATADLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRFPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQEKIEEGMALQVR 296
            MVYSRDRDMKAGFEATRIL+ ALGLVEKVEH+L ELEQ QGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSH+HQLLAEYFLSRG   RGL+HFSELVACTTDEDAR+QLVDDFRRNDGFRRATA LTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLR+ARCIGEGRMEARALGNLATVDYKTHR PAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESE+NV  L RLQE+IEEGMALQ R
Sbjct:  254 MVYSRDRDMKAGFEATRILEGALGLVEKVEHILRELEQDQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHIHQLLAEYFLSRGWHERGLDHFSELVACTTDEDARQQLVDDFRRNDGFRRATAGLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRNARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEENVLHLARLQERIEEGMALQAR 549          
BLAST of mRNA_Ecto-sp13_S_contig7087.18169.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI)

HSP 1 Score: 544 bits (1402), Expect = 9.330e-185
Identity = 278/296 (93.92%), Postives = 285/296 (96.28%), Query Frame = 0
Query:    1 MVYSRDRDMKAGFEATRILQEALGLVEKVEHVLGELEQGQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLEHFSELVACTTDEDARRQLVDDFRRNDGFRRATADLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRFPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQEKIEEGMALQVR 296
            MVYSRD  MKAGFEATRILQEALGLVEKVEH+L ELEQGQGDPQLQAKALRLGGDILWKLHREE+GVASYLRCL+VVSEAEKV  AS  GSPVVTISVLSHVHQLLAEYFLSRGSPGRGL+HFSELVACTTDEDARRQLVDDFRRNDGF+RATA LTQSSVQE+LDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHR PAAIRRYRTCVQLLRQQGNQ TERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQE+IEEGMALQ R
Sbjct:  254 MVYSRD--MKAGFEATRILQEALGLVEKVEHILLELEQGQGDPQLQAKALRLGGDILWKLHREEKGVASYLRCLNVVSEAEKVQGASDHGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLDHFSELVACTTDEDARRQLVDDFRRNDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQERIEEGMALQAR 547          
BLAST of mRNA_Ecto-sp13_S_contig7087.18169.1 vs. uniprot
Match: K8YX09_NANGC (Tpr domain-containing protein (Fragment) n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YX09_NANGC)

HSP 1 Score: 104 bits (259), Expect = 7.280e-22
Identity = 84/275 (30.55%), Postives = 141/275 (51.27%), Query Frame = 0
Query:   20 QEALGLVEKVEHVLGELEQGQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLEHFSELVACTTDEDARRQLVDDFRRNDGFRRATADLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRDARCI----GEGR--MEARALGNLATVDYKTHRFPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQEKIE 288
            ++AL L++ V  +         + ++QA+A ++ G +L ++   +E    Y   LSV +    +  A            L +VH  LA+++LS  +    LEHF +LVA T D   RR+L+ +F R         D+T   + + L++G  ++R + +  A ++F +V++ AR      G+G   +EARALGN ATV     R   +I  YR C +LL +   +  ER++LN L +  IEA R+  A +  E+L  L E + NV+L+    E+I+
Sbjct:   81 EDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYE--LSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQ 353          
BLAST of mRNA_Ecto-sp13_S_contig7087.18169.1 vs. uniprot
Match: A0A4D9CYM5_9STRA (SH2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYM5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.950e-20
Identity = 84/275 (30.55%), Postives = 139/275 (50.55%), Query Frame = 0
Query:   20 QEALGLVEKVEHVLGELEQGQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLEHFSELVACTTDEDARRQLVDDFRRNDGFRRATADLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRDARCI----GEGR--MEARALGNLATVDYKTHRFPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQEKIE 288
            ++AL L++ V  +         + ++QA+A ++ G +L ++   +E    Y   LSV +    +  A            L +VH  LA+++LS  +    LEHF +LVA T D   RR L+ +F R         D+T   + + L++G  ++R + +  A ++F +V++ AR      G+G   +EARALGN ATV     R   +I  YR C +LL +   +  ER++LN L +  IEA R+  A +  E+L  L E + NV L+    E+I+
Sbjct:  516 EDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYE--LSVRAGRRLLQQAPLSEDLSKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDVGDRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVGLVKTRLEEIQ 788          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7087.18169.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JE26_9PHAE4.220e-18593.24SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LBM4_ECTSI9.330e-18593.92TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
K8YX09_NANGC7.280e-2230.55Tpr domain-containing protein (Fragment) n=3 Tax=N... [more]
A0A4D9CYM5_9STRA2.950e-2030.55SH2 domain-containing protein n=1 Tax=Nannochlorop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 166..282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7087contigEcto-sp13_S_contig7087:459..5954 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7087.18169.1mRNA_Ecto-sp13_S_contig7087.18169.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7087 60..7150 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7087.18169.1 ID=prot_Ecto-sp13_S_contig7087.18169.1|Name=mRNA_Ecto-sp13_S_contig7087.18169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MVYSRDRDMKAGFEATRILQEALGLVEKVEHVLGELEQGQGDPQLQAKAL
RLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLS
HVHQLLAEYFLSRGSPGRGLEHFSELVACTTDEDARRQLVDDFRRNDGFR
RATADLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRME
ARALGNLATVDYKTHRFPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMC
CIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQEKIEEGMALQVRSSAL
SEEGLHA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf