prot_Ecto-sp13_S_contig12148.1816.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12148.1816.1
Unique Nameprot_Ecto-sp13_S_contig12148.1816.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length348
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 9.580e-71
Identity = 129/134 (96.27%), Postives = 133/134 (99.25%), Query Frame = 0 
Query:   52 RSSEISVDPFPNTASANASGGGGVPGPSVPGATAAVVRGDIANGLDMFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 185
            R SEISVDPFPNTA+ANASGGGGVPGPSVPGATAAVVRGDIANG++MFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAM+ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM
Sbjct:   22 RPSEISVDPFPNTANANASGGGGVPGPSVPGATAAVVRGDIANGVEMFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 155
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 5.010e-12
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:  127 CNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGI 190
            CN  LR LGD G ++  V  +EAMVA  +RPT VT+ TLISRAGA R+ +LA R +R+ML  G+
Sbjct:    2 CNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASRMYRDMLRRGL 65
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.570e-10
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 0 
Query:  114 TAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAE 179
            TA+  P Q  V  CN FLR LGD+GR+ D V AYEAMV   L PTIVTFSTLISRAGA  +  LA+
Sbjct:  114 TASKRPPQ--VRDCNRFLRVLGDSGRLQDAVQAYEAMVKAGLMPTIVTFSTLISRAGAAGKTALAQ 177
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: A0A482S411_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S411_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-5
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:  127 CNVFLRALGDAGRIDDCVAAYEAMV--ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 185
            CNV LR LGD G +  C   ++ M+  + +L P++VT+STLISRAG  +RV LA  FF  M
Sbjct:  138 CNVLLRVLGDQGALSFCTQIFQLMLTHSPRLSPSLVTYSTLISRAGTWQRVDLARYFFDHM 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI9.580e-7196.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2D4Z0_9EUKA5.010e-1254.69Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A836CEM1_9STRA4.570e-1062.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482S411_9ARCH1.080e-549.18Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 89..205
e-value: 5.2E-18
score: 67.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 211..348
e-value: 1.4E-48
score: 167.9
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 212..343
e-value: 5.4E-15
score: 55.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 157..206
e-value: 1.0E-8
score: 35.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 230..263
e-value: 3.8E-9
score: 34.2
coord: 197..228
e-value: 6.8E-9
score: 33.4
coord: 160..194
e-value: 1.9E-6
score: 25.7
coord: 126..158
e-value: 0.0023
score: 16.0
coord: 266..298
e-value: 2.5E-8
score: 31.6
coord: 300..334
e-value: 4.2E-8
score: 30.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 158..192
score: 10.534
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 123..157
score: 8.111
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 228..262
score: 12.43
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 193..227
score: 12.792
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 333..348
score: 6.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 298..332
score: 12.288
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 263..297
score: 11.674
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 131..346

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12148contigEcto-sp13_S_contig12148:924..4840 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12148.1816.1mRNA_Ecto-sp13_S_contig12148.1816.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12148 924..4840 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12148.1816.1 ID=prot_Ecto-sp13_S_contig12148.1816.1|Name=mRNA_Ecto-sp13_S_contig12148.1816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=348bp
QLSRQRQRQRRRRRPFSPALSQERSNGPPPHREAAAINTATTTMALSSSN
TRSSEISVDPFPNTASANASGGGGVPGPSVPGATAAVVRGDIANGLDMFL
ECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAM
VACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSL
INAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQ
VFSRLSHAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRV
TYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat