mRNA_Ecto-sp13_S_contig70834.18165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70834.18165.1
Unique NamemRNA_Ecto-sp13_S_contig70834.18165.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70834.18165.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.930e-8
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = -2 
Query:    3 LVPADEPTSGLDARSAQVVMRAIRKVAATQRAVICT 110
            +V  DEPTSGLDARSAQVVMRAIRKVAATQRAVICT
Sbjct:  229 IVFLDEPTSGLDARSAQVVMRAIRKVAATQRAVICT 264
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BLAST of mRNA_Ecto-sp13_S_contig70834.18165.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.020e-8
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = -2 
Query:    3 LVPADEPTSGLDARSAQVVMRAIRKVAATQRAVICT 110
            +V  DEPTSGLDARSAQVVMRAIRKVAATQRAVICT
Sbjct:  925 IVFLDEPTSGLDARSAQVVMRAIRKVAATQRAVICT 960
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BLAST of mRNA_Ecto-sp13_S_contig70834.18165.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.030e-8
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = -2 
Query:    3 LVPADEPTSGLDARSAQVVMRAIRKVAATQRAVICT 110
            +V  DEPTSGLDARSAQVVMRAIRKVAATQRAVICT
Sbjct: 1013 IVFLDEPTSGLDARSAQVVMRAIRKVAATQRAVICT 1048
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BLAST of mRNA_Ecto-sp13_S_contig70834.18165.1 vs. uniprot
Match: D7FQN0_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.530e-8
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = -2 
Query:    3 LVPADEPTSGLDARSAQVVMRAIRKVAATQRAVICT 110
            LV  DEPTSGLDARSAQVVMRAIRKVAAT RAVICT
Sbjct:  162 LVLLDEPTSGLDARSAQVVMRAIRKVAATGRAVICT 197
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BLAST of mRNA_Ecto-sp13_S_contig70834.18165.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.110e-6
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = -2 
Query:    3 LVPADEPTSGLDARSAQVVMRAIRKVAATQRAVICT 110
            L+  DEPT+GLDARSAQVV+RAIRKVA+T RAVICT
Sbjct:  870 LIFLDEPTTGLDARSAQVVLRAIRKVASTGRAVICT 905
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BLAST of mRNA_Ecto-sp13_S_contig70834.18165.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.530e-5
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = -2 
Query:    3 LVPADEPTSGLDARSAQVVMRAIRKVAATQRAVICT 110
            L+  DEPT+GLDARSAQVV+RAIRKVA T R ++CT
Sbjct:  944 LIFLDEPTTGLDARSAQVVVRAIRKVATTGRTIVCT 979
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70834.18165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K7U8_9PHAE1.930e-891.67ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LFP2_ECTSI2.020e-891.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFN4_ECTSI2.030e-891.67Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
D7FQN0_ECTSI6.530e-891.67ABC transporter domain-containing protein n=1 Tax=... [more]
A0A835ZIR5_9STRA2.110e-680.56ABC-2 type transporter-domain-containing protein n... [more]
A0A835Z0F1_9STRA2.530e-572.22ABC-2 type transporter-domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70834contigEcto-sp13_S_contig70834:60..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size372
Hectar predicted targeting categorymitochondrion
Exons2
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.4201193-CDS-Ecto-sp13_S_contig70834:59..2031681463971.4201193-CDS-Ecto-sp13_S_contig70834:59..203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70834 60..203 +
1681463971.4327972-CDS-Ecto-sp13_S_contig70834:329..5571681463971.4327972-CDS-Ecto-sp13_S_contig70834:329..557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70834 330..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70834.18165.1prot_Ecto-sp13_S_contig70834.18165.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70834 60..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70834.18165.1

>prot_Ecto-sp13_S_contig70834.18165.1 ID=prot_Ecto-sp13_S_contig70834.18165.1|Name=mRNA_Ecto-sp13_S_contig70834.18165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MVQITARWVAATLRMARITTCAERASKPDVGSSAGTNRAGRKKDEEEEVL
PHNGEVDTQRATCLECGLGRHVLASFCTAYMDTPDHVTVVEDAGRKGARG
FQRQQQGASIDAHPGACTQTINR*
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mRNA from alignment at Ecto-sp13_S_contig70834:60..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70834.18165.1 ID=mRNA_Ecto-sp13_S_contig70834.18165.1|Name=mRNA_Ecto-sp13_S_contig70834.18165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70834:60..557+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCAGATCACGGCGCGCTGGGTGGCGGCCACCTTGCGGATGGCGCG
CATCACCACCTGCGCCGAGCGAGCGTCTAAGCCGGACGTTGGCTCATCTG
CGGGAACCAACAGGGCGGGGAGGAAGAAAGACGAGGAGGAGGAGGTAAGT
TGATACGACTCTGAAGAATTGCCTCGATGCCAACTGCTACTGCTCGCGAG
TGGTTCCAAATTACGCTGGGGTGGAAACACAGCTGACGAATCACTGCAAA
TATTTTCATCGTCACCCTAGGTCCTACCGCACAACGGGGAGGTCGACACG
CAAAGAGCAACTTGTTTGGAGTGCGGACTCGGGAGGCACGTGCTTGCGTC
CTTCTGCACGGCATACATGGATACGCCGGATCACGTGACGGTTGTCGAGG
ATGCTGGAAGAAAGGGGGCGAGGGGGTTCCAGCGGCAACAACAGGGAGCG
TCTATCGATGCGCATCCCGGCGCATGCACTCAAACAATCAACAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70834:60..557+

>mRNA_Ecto-sp13_S_contig70834.18165.1 ID=mRNA_Ecto-sp13_S_contig70834.18165.1|Name=mRNA_Ecto-sp13_S_contig70834.18165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70834:60..557+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCAGATCACGGCGCGCTGGGTGGCGGCCACCTTGCGGATGGCGCG
CATCACCACCTGCGCCGAGCGAGCGTCTAAGCCGGACGTTGGCTCATCTG
CGGGAACCAACAGGGCGGGGAGGAAGAAAGACGAGGAGGAGGAGGTCCTA
CCGCACAACGGGGAGGTCGACACGCAAAGAGCAACTTGTTTGGAGTGCGG
ACTCGGGAGGCACGTGCTTGCGTCCTTCTGCACGGCATACATGGATACGC
CGGATCACGTGACGGTTGTCGAGGATGCTGGAAGAAAGGGGGCGAGGGGG
TTCCAGCGGCAACAACAGGGAGCGTCTATCGATGCGCATCCCGGCGCATG
CACTCAAACAATCAACAGGTAG
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