mRNA_Ecto-sp13_S_contig70792.18163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70792.18163.1
Unique NamemRNA_Ecto-sp13_S_contig70792.18163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: D7FRS4_ECTSI (MoCF_biosynth domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRS4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.800e-26
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    4 SPSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGTRP 165
            +PSSDWMPPFMRVNPVIDWNYGQVW FLRDFELPYCSLYDEGYTSLG    T P
Sbjct:  202 TPSSDWMPPFMRVNPVIDWNYGQVWGFLRDFELPYCSLYDEGYTSLGNLDNTFP 255
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: F0XY18_AURAN (PAPS_reduct domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY18_AURAN)

HSP 1 Score: 95.1 bits (235), Expect = 3.450e-24
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    7 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGT 159
            PSSDWMPPFMRVNP++DW YG VWAFLR F+LPYC+LYD GYTSLG    T
Sbjct:   25 PSSDWMPPFMRVNPILDWTYGDVWAFLRAFDLPYCALYDGGYTSLGSAPTT 75
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A7S1FST5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FST5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.620e-23
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    7 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGTRP 165
            PSSDWMPPFMRVNPV+DW+YG VW FLR F+LPYCSLYDEGYTSLG+   TRP
Sbjct:  265 PSSDWMPPFMRVNPVLDWDYGHVWHFLRLFDLPYCSLYDEGYTSLGKIEDTRP 317
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A7S2SEI8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEI8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.020e-22
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    4 SPSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGE 147
            SPSSDW+PPFMRVNP+++WNYG VW FLR ++LPYCSLYDEGYTSLG+
Sbjct:  174 SPSSDWLPPFMRVNPILNWNYGHVWQFLRSYDLPYCSLYDEGYTSLGK 221
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A7S3ZSN1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.660e-22
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    7 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGTR 162
            PSS+WMP FMRVNP++DW+YG VW+FLR F+LPYCSLYDEGYTSLG    T+
Sbjct:  178 PSSEWMPAFMRVNPILDWSYGDVWSFLRTFDLPYCSLYDEGYTSLGSVSSTK 229
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A7S4NMG3_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NMG3_GUITH)

HSP 1 Score: 95.1 bits (235), Expect = 1.710e-21
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 SPSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGTRP 165
            SPSS +MPPFMRVNP+IDWNYG VW FL+ FELPYC LYD+GYTS+G    TRP
Sbjct:  246 SPSSAYMPPFMRVNPIIDWNYGHVWKFLKYFELPYCCLYDQGYTSIGTPDNTRP 299
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A0M0JJD9_9EUKA (Fad synthetase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJD9_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 2.520e-21
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    7 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGT 159
            PSSDWMPPFMRVNP++ W+Y  VWAFLR + LPYCSLYD GYTSLG+   T
Sbjct:  160 PSSDWMPPFMRVNPILAWSYADVWAFLRTYALPYCSLYDAGYTSLGKSTNT 210
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A7S2J9K7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J9K7_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 5.790e-21
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    4 SPSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGT 159
            SPSSDWMPPFMRVNP++ W++ +VWAFLR+++LPYC LYD+GYTSLG+   T
Sbjct:  193 SPSSDWMPPFMRVNPILHWDFAEVWAFLREYKLPYCKLYDDGYTSLGKTTNT 244
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A0G4FEP0_9ALVE (MoCF_biosynth domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FEP0_9ALVE)

HSP 1 Score: 93.6 bits (231), Expect = 6.010e-21
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    7 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGTRP 165
            PSSDWMPPFMRVNP+++W YG VW F+R ++LPYC LYD+GYTS+G+   T P
Sbjct:  191 PSSDWMPPFMRVNPILEWTYGDVWTFIRSYDLPYCDLYDKGYTSVGKKSSTLP 243
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BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Match: A0A7S1QXR4_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QXR4_ALECA)

HSP 1 Score: 89.0 bits (219), Expect = 6.790e-21
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    4 SPSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGTRP 165
            +PSS WMPP MRVNP++DW+YGQVW  LR+  LPYC+LYD GYTSLG    TRP
Sbjct:   60 APSSAWMPPGMRVNPILDWDYGQVWRMLRELGLPYCALYDRGYTSLGTVDDTRP 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70792.18163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRS4_ECTSI3.800e-2687.04MoCF_biosynth domain-containing protein n=2 Tax=Ec... [more]
F0XY18_AURAN3.450e-2476.47PAPS_reduct domain-containing protein (Fragment) n... [more]
A0A7S1FST5_9STRA1.620e-2381.13Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2SEI8_9STRA1.020e-2279.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZSN1_9STRA1.660e-2273.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4NMG3_GUITH1.710e-2174.07Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A0M0JJD9_9EUKA2.520e-2172.55Fad synthetase n=1 Tax=Chrysochromulina tobinii Ta... [more]
A0A7S2J9K7_9EUKA5.790e-2169.23Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0G4FEP0_9ALVE6.010e-2166.04MoCF_biosynth domain-containing protein n=1 Tax=Ch... [more]
A0A7S1QXR4_ALECA6.790e-2168.52Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70792contigEcto-sp13_S_contig70792:24..188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score96.7
Seed ortholog evalue3.2e-18
Seed eggNOG ortholog2880.D7FRS4
Model size165
KEGG rclassRC00002
KEGG koko:K00953
KEGG ReactionR00161
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.flavin adenine dinucleotide biosynthetic process
EggNOG OGsCOG0175@1,KOG2644@2759
EC2.7.7.2
Cds size144
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.343452-UTR-Ecto-sp13_S_contig70792:23..441681463971.343452-UTR-Ecto-sp13_S_contig70792:23..44Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70792 24..44 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.3550527-CDS-Ecto-sp13_S_contig70792:44..1881681463971.3550527-CDS-Ecto-sp13_S_contig70792:44..188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70792 45..188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70792.18163.1prot_Ecto-sp13_S_contig70792.18163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70792 45..188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70792.18163.1

>prot_Ecto-sp13_S_contig70792.18163.1 ID=prot_Ecto-sp13_S_contig70792.18163.1|Name=mRNA_Ecto-sp13_S_contig70792.18163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLGTRP
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mRNA from alignment at Ecto-sp13_S_contig70792:24..188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70792.18163.1 ID=mRNA_Ecto-sp13_S_contig70792.18163.1|Name=mRNA_Ecto-sp13_S_contig70792.18163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70792:24..188+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCCCCTTCCAGCGACTGGATGCCCCCGTTCATGCGAGTGAACCCGGT
GATCGACTGGAATTACGGGCAGGTCTGGGCCTTCCTGCGGGATTTCGAGC
TACCGTACTGCTCGCTGTACGACGAGGGATACACGTCCCTAGGTGAGGGT
CTTGGCACACGGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70792:24..188+

>mRNA_Ecto-sp13_S_contig70792.18163.1 ID=mRNA_Ecto-sp13_S_contig70792.18163.1|Name=mRNA_Ecto-sp13_S_contig70792.18163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70792:24..188+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCGTTCATGCGAGTGAACCCGGTGATCGACTGGAATTACGGGCA
GGTCTGGGCCTTCCTGCGGGATTTCGAGCTACCGTACTGCTCGCTGTACG
ACGAGGGATACACGTCCCTAGGTGAGGGTCTTGGCACACGGCCA
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