mRNA_Ecto-sp13_S_contig7079.18162.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7079.18162.1
Unique NamemRNA_Ecto-sp13_S_contig7079.18162.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: D8LG40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG40_ECTSI)

HSP 1 Score: 578 bits (1491), Expect = 1.330e-200
Identity = 342/377 (90.72%), Postives = 350/377 (92.84%), Query Frame = 1 
Query:    1 MSRPRADFESEEFNEESPLSKKPRLSSGTGDDAFEGLTRYGNGNGGGSTFAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TAVCKNKKKPWKVHASASGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPS-VSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEE-DGGEGMAVCDEGGDV--GDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEV 1116
            MSR RADFESEEFNEESPLSKK RLSSG GDDAFEGLT YGNG+GGGSTFAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TAVCKNKKKPWKVHASA GGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRA IDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNY+CWLSDL+KLSPPS VSA RH         XXXXXXXM  AQRNLLLYGTTRGVEE DGGEGMAVCD+  D   GDLDQATGGAKKPSRRGVDVGTGASCIYPLLGA+VAGWSFLATEIDPVSAEWAEKN+RSNDLQE+IEVRLVPSPAD GDDEA+PGPLLAALREEDGDFDFSMTNPPFFESADEV
Sbjct:    1 MSRSRADFESEEFNEESPLSKKRRLSSGIGDDAFEGLTSYGNGDGGGSTFAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVCKNKKKPWKVHASAGGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRAAIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPPSSVSARRHXXXXXXXXXXXXXXXXMNLAQRNLLLYGTTRGVEEEDGGEGMAVCDDNDDDVDGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGAKVAGWSFLATEIDPVSAEWAEKNVRSNDLQEKIEVRLVPSPADSGDDEAAPGPLLAALREEDGDFDFSMTNPPFFESADEV 377
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: W7TD89_9STRA (Methyltransferase 10 domain containing n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TD89_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.780e-42
Identity = 111/298 (37.25%), Postives = 141/298 (47.32%), Query Frame = 1 
Query:  316 KMHDANLYRHYRPDFRELAREYPDTFGP---HVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASP------------GPLLAALRE----EDGDFDFSMTNPPFFESADEVRAFEILTRPRGT 1152
            K H  + YR YRPDF  LAR YPDTFG    ++ DD     A IDW DP + R LT+ +LRHDFGL EWD PL+RLCPPV NRLNY+CW+ DL+ L     S  R                                G+                                RG+DVGTGAS IYPLLG ++  WSFL T+IDP + E A  N+R N ++++I ++LV S  D  +  +              GP+  AL       + + DF M NPPFF S DE+ +   L   R T
Sbjct:   29 KFHQDSKYRGYRPDFAALARLYPDTFGHLVIYLNDD--KSEALIDWKDPISTRALTKTLLRHDFGL-EWDIPLERLCPPVPNRLNYVCWVKDLLSLGGSDTSQSR-------------------------------TGI--------------------------------RGLDVGTGASAIYPLLGCKLHDWSFLGTDIDPEALEAASANVRENHMEDRISLQLV-SRVDYSELSSFSFTALQTGAGSVRGPIQTALDAAGMGSEYELDFVMCNPPFFASLDEIHSGFSLKSGRKT 259
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: W2PG03_PHYPN (U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PG03_PHYPN)

HSP 1 Score: 147 bits (370), Expect = 7.030e-37
Identity = 99/272 (36.40%), Postives = 135/272 (49.63%), Query Frame = 1 
Query:  310 GGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTG-RATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGD--FDFSMTNPPFFESADEV 1116
            G   HD N Y+   PDF  L  +YP+ F  ++R+  D   RA++ W DP A+RELT+ +L HDFGLR WD P++RLCPP+ NRLNY+ W+ DL+  +  +     H  S E                                   +AV                       G+DVGTGA+CIY LLGA ++ W F+ATEIDPVS E A++NI SN L+  I ++   +      D+     LL  L +E  +  FDF M NPPFF++  E 
Sbjct:   13 GALAHDRNRYKDNPPDFYALGEQYPE-FKQYLRNVDDARCRASLAWDDPFAVRELTKTLLLHDFGLR-WDIPINRLCPPLPNRLNYLHWIEDLLAQANWNGKRQTHQKSTE-----------------------------------VAVS----------------------GIDVGTGANCIYALLGATMSKWKFIATEIDPVSYECAKENITSNQLETLISIKQTHT------DKL----LLEPLEDEPPERKFDFVMCNPPFFDNMKEA 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: D8S370_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S370_SELML)

HSP 1 Score: 148 bits (373), Expect = 1.260e-36
Identity = 98/266 (36.84%), Postives = 131/266 (49.25%), Query Frame = 1 
Query:  322 HDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSND-LQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEV 1116
            H  N Y    PDF  LA  Y  +F  +VR +P TGR +IDW D AA RELTRV+L  D+G+  W  P  +LCP V NR NYI W+ DL++  P                          +  +N+                     EGG +                G+D+GTGAS IYPLLGA + GW F+AT++  V+ EW  +NI +N  L E IE+R      +GG+D+     LL  + +++  FDFSM NPPFFES +E 
Sbjct:    8 HPRNRYAEGSPDFAALAARYA-SFARYVRINPSTGRGSIDWRDYAATRELTRVLLDCDYGILGWWIPDGQLCPAVTNRANYIHWIEDLLQEFP--------------------------APGKNV---------------------EGGVL----------------GLDIGTGASTIYPLLGASLRGWKFVATDVTSVALEWGRRNIAANPHLMELIELRSAAK--NGGEDQEENHRLLVGVVKDEEIFDFSMCNPPFFESMEEA 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: A0A7S2TVK9_9EUKA (U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVK9_9EUKA)

HSP 1 Score: 146 bits (368), Expect = 1.260e-35
Identity = 99/285 (34.74%), Postives = 132/285 (46.32%), Query Frame = 1 
Query:  268 KNKKKPWKVHASASGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVA-GWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEVR 1119
            K K K   V  S++  +MH  N +    PDF  LA +Y D F  HV+ +P T R  I + DP A+  L R +++  FGL EW+ P+DRLCPP++NRLNYI W+ DL+KL+ P                                L G    V                                 G D+GTGASCIYPLLG  V   W F+AT+ID  S E A KN+  N+L+ +I++R V               +  ALR+ DG   F M NPPFF SA +++
Sbjct:   13 KKKAKGGWVSISSNNARMHPRNPFNGKEPDFSALAAKY-DFFANHVKVNPKTQRPYIKYKDPKAVICLNRALMKDTFGL-EWNVPIDRLCPPISNRLNYILWIQDLLKLNAP--------------------------------LSGNASAV---------------------------------GFDIGTGASCIYPLLGTAVEKNWRFIATDIDDKSLESARKNVVGNNLETRIDLRKVNRSVR----------IAGALRDSDGPLAFCMCNPPFFASALDIK 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: W4FKW2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FKW2_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.870e-35
Identity = 98/266 (36.84%), Postives = 128/266 (48.12%), Query Frame = 1 
Query:  319 MHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEV 1116
            +H  N+YR+  PDF+ LA+ YP +  P+V +  + G  T+ W+DP A RELTR +L  DFG+  W  PL+RLCPP+ NRLNYI W+ DL+  S  S        S EDA                  ++G                                       VD+GTGAS IYPLLG  +  W FLAT+ID  S E+A  N+RSN L+  I +  V   ADG D    P   +      DG   F+M NPPFF+S D+ 
Sbjct:   16 IHPRNMYRN-PPDFKALAKAYP-SLQPYVHES-NIGHTTLKWSDPQAARELTRALLHRDFGITTWHVPLNRLCPPLPNRLNYIHWIEDLILFSQSSYV------STEDAP-----------------IWG---------------------------------------VDIGTGASVIYPLLGHSLNQWRFLATDIDAESIEYAAANLRSNHLEHVIHLETV---ADGHDASILPTASIQRRCRHDGPVLFTMCNPPFFDSIDQA 213
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: A0A835YSM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM3_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.640e-35
Identity = 87/203 (42.86%), Postives = 105/203 (51.72%), Query Frame = 1 
Query:  508 EWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEV 1116
            EWD PLDRLCPPV NRLNY+CWLSDL+ L   S S G                                      G + +A  D+            GA     R +D+GTGASCIYPLLG R  GWSF+AT+ID  SA WA +N+  N L+  IEVR VP+        A  GP+L A+ ++DG FDF MTNPPFF S +E 
Sbjct:    9 EWDMPLDRLCPPVPNRLNYLCWLSDLLALRKQSASPG--------------------------------------GADAVAADDQ----------PAGAMV---RVLDIGTGASCIYPLLGHRFLGWSFVATDIDAESARWARQNVTRNGLEAAIEVREVPAAT------AERGPVLTAMGDDDGSFDFVMTNPPFFASMEEA 154
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: UPI001B889072 (RNA N6-adenosine-methyltransferase METTL16-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889072)

HSP 1 Score: 146 bits (369), Expect = 8.090e-35
Identity = 93/273 (34.07%), Postives = 132/273 (48.35%), Query Frame = 1 
Query:  319 MHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEVRAFEILT 1137
            MH  N YR+ +P+F++LA EYP+ F  H   D DTG+  +D+ DP+A+R LT+ +L+HDF L + D P DRL P V  RLNYI W+ D++                                       G T G                D+               RG+D+GTG+SC+YPLLG R+  WSFLATE+DP +A +A  N+  N ++  I+V+ V          +    LLAA+++    + F M NPPFF  AD + A  + T
Sbjct:    7 MHPRNKYRNKKPNFKDLASEYPE-FAKHTTRDDDTGKVHLDFKDPSALRALTKTLLKHDFQL-DIDLPSDRLVPTVPLRLNYIHWIEDIL---------------------------------------GDTEG----------------DI---------------RGIDIGTGSSCVYPLLGCRLNNWSFLATEMDPQNAHYATNNVEKNHMENMIKVKKV----------SKGNILLAAVKDSTESYHFCMCNPPFF--ADHLEAQAVTT 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: W2HX29_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2HX29_PHYPR)

HSP 1 Score: 145 bits (367), Expect = 3.200e-34
Identity = 99/272 (36.40%), Postives = 134/272 (49.26%), Query Frame = 1 
Query:  310 GGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTG-RATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGD--FDFSMTNPPFFESADEV 1116
            G   HD N Y+   PDF  L  +YP+ F  ++R+  D   RA++ W DP A+RELT+ +L HDFGLR WD P++RLCPP+ NRLNY+ W+ DL+  +  +     H  S E                                   +AV                       G+DVGTGA+CIY LLGA +  W F+ATEIDPVS E A++NI SN L+  I ++   +      D+     LL  L +E  +  FDF M NPPFF++  E 
Sbjct:  859 GALAHDRNRYKDNPPDFYALGEQYPE-FKQYLRNVDDARCRASLAWDDPFAVRELTKTLLLHDFGLR-WDIPINRLCPPLPNRLNYLHWIEDLLAQANWNGKRQTHQKSTE-----------------------------------VAVS----------------------GIDVGTGANCIYALLGATMNKWKFIATEIDPVSYECAKENITSNQLETLISIKQTHT------DKL----LLEPLEDEPPERKFDFVMCNPPFFDNMKEA 1061
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Match: A0A7S0HCW6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HCW6_9CRYP)

HSP 1 Score: 142 bits (359), Expect = 4.450e-34
Identity = 94/276 (34.06%), Postives = 132/276 (47.83%), Query Frame = 1 
Query:  295 HASASGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSPPSVSAGRHSSSPEDASGXXXXXXXMTSAQRNLLLYGTTRGVEEDGGEGMAVCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVA-GWSFLATEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEVR 1119
            HA     +MH  N+Y   +PDF +LA++YP +F  H+    D G++ ++W D  A  ELT+ +L+ DF +  WD P   LCPP+  RLNYI W+ D                                      LL GT   VE    + +A+                   P  RGVD+G GA+CIYPLLG R   GW FL ++I+  + E A  N++ N L+  I++RL+         +     L+  L+EEDG+FDF M NPPFF S DE +
Sbjct:  107 HAGDFDNRMHPRNIYFRKQPDFAKLAQKYP-SFSKHMIQQKD-GKSLLNWKDAQAHIELTKTLLQEDFQI-SWDIPPHFLCPPLPQRLNYIHWIED--------------------------------------LLAGTIE-VETKPADSLAI------------------PPHVRGVDIGVGANCIYPLLGVRTQPGWKFLGSDINGTALECARANVQRNGLEGSIDLRLM---------DRQKRLLVDLLKEEDGEFDFVMCNPPFFASMDEAK 313
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7079.18162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG40_ECTSI1.330e-20090.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TD89_9STRA4.780e-4237.25Methyltransferase 10 domain containing n=2 Tax=Nan... [more]
W2PG03_PHYPN7.030e-3736.40U6 small nuclear RNA (adenine-(43)-N(6))-methyltra... [more]
D8S370_SELML1.260e-3636.84Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A7S2TVK9_9EUKA1.260e-3534.74U6 small nuclear RNA (adenine-(43)-N(6))-methyltra... [more]
W4FKW2_9STRA2.870e-3536.84RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A835YSM3_9STRA3.640e-3542.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001B8890728.090e-3534.07RNA N6-adenosine-methyltransferase METTL16-like n=... [more]
W2HX29_PHYPR3.200e-3436.40Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A7S0HCW6_9CRYP4.450e-3434.06Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7079contigEcto-sp13_S_contig7079:3723..7409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score586.3
Seed ortholog evalue1.1e-164
Seed eggNOG ortholog2880.D8LG40
Preferred nameMETTL16
Model size1244
KEGG rclassRC00003,RC00335
KEGG koko:K06970,ko:K11393,ko:K11853,ko:K13119
KEGG ReactionR07232
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000226,GO:0001510,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008174,GO:0008649,GO:0008757,GO:0008988,GO:0009056,GO:0009057,GO:0009451,GO:0009790,GO:0009791,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016422,GO:0016433,GO:0016556,GO:0016740,GO:0016741,GO:0017069,GO:0017070,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022613,GO:0030629,GO:0031023,GO:0031167,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035613,GO:0040025,GO:0040031,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043484,GO:0043487,GO:0043488,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048569,GO:0048731,GO:0048856,GO:0050684,GO:0050779,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0052907,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0065007,GO:0065008,GO:0070475,GO:0071704,GO:0071840,GO:0080009,GO:0080090,GO:0090304,GO:0097159,GO:0120048,GO:0120049,GO:0140098,GO:0140102,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903311,GO:1903313,GO:2000112,GO:2000113
Exons5
EggNOG free text desc.23S rRNA (adenine(1618)-N(6))-methyltransferase activity
EggNOG OGsCOG3129@1,KOG2912@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-11_002040.2
EC2.1.1.181,3.4.19.12
Cds size1203
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko03041,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7079.18162.1prot_Ecto-sp13_S_contig7079.18162.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7079 3723..7368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.2509658-CDS-Ecto-sp13_S_contig7079:3722..37681681463971.2509658-CDS-Ecto-sp13_S_contig7079:3722..3768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 3723..3768 +
1681463971.2685037-CDS-Ecto-sp13_S_contig7079:4346..46851681463971.2685037-CDS-Ecto-sp13_S_contig7079:4346..4685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 4347..4685 +
1681463971.2871656-CDS-Ecto-sp13_S_contig7079:5345..59231681463971.2871656-CDS-Ecto-sp13_S_contig7079:5345..5923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 5346..5923 +
1681463971.2968843-CDS-Ecto-sp13_S_contig7079:6523..66871681463971.2968843-CDS-Ecto-sp13_S_contig7079:6523..6687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 6524..6687 +
1681463971.3056228-CDS-Ecto-sp13_S_contig7079:7292..73681681463971.3056228-CDS-Ecto-sp13_S_contig7079:7292..7368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7079 7293..7368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.31432-UTR-Ecto-sp13_S_contig7079:7368..74091681463971.31432-UTR-Ecto-sp13_S_contig7079:7368..7409Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7079 7369..7409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7079.18162.1

>prot_Ecto-sp13_S_contig7079.18162.1 ID=prot_Ecto-sp13_S_contig7079.18162.1|Name=mRNA_Ecto-sp13_S_contig7079.18162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MSRPRADFESEEFNEESPLSKKPRLSSGTGDDAFEGLTRYGNGNGGGSTF
AINDDDDDALDEGGAAADDAASPEGVDSGGGDGGGTAVCKNKKKPWKVHA
SASGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWAD
PAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYICWLSDLVKLSP
PSVSAGRHSSSPEDASGEEGGGGGMTSAQRNLLLYGTTRGVEEDGGEGMA
VCDEGGDVGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGARVAGWSFLA
TEIDPVSAEWAEKNIRSNDLQEQIEVRLVPSPADGGDDEASPGPLLAALR
EEDGDFDFSMTNPPFFESADEVRAFEILTRPRGTWPPQGRWRAPEGRWPS
*
back to top

mRNA from alignment at Ecto-sp13_S_contig7079:3723..7409+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7079.18162.1 ID=mRNA_Ecto-sp13_S_contig7079.18162.1|Name=mRNA_Ecto-sp13_S_contig7079.18162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7079:3723..7409+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAGACCGAGGGCCGACTTCGAAAGCGAGGAGTTCAACGAAGGTGC
GGCGAAACTGGGTCCTCATGTCCGAGTATATGGCGTCTGTAGGTGCTGCT
TCACCTCTCCTGCCCCTGCTGGCATTGCTTGATTTCAAACCCGACTGACA
CCTATCATTTTCGAGCCACCAGCAATGCTCGTTCCTTCCTTGCTACCGCT
TTGCTGCACACAGCGGTCACTGCTGTCCGTTCTGTCTAAGCCGTGTTCTC
TGTTTGGGGGCGATCGGCGGCTTCAGCAGGGTACATGTAGTGGGCAGCTG
CACATCCGCGGTAGCTCTGCATGATGTTTGGATATGTTCGCCTAACCCTC
TCCCTTTGTTGCACACCTGCAGCAGTGAATCCCTCGTGTGTCACGGTCCC
GTGTCGTGTCTCTGCCACCAGACAGCAAGCAATGTTTCACCGTTGTGATG
CCGCTCGAGAGGAATGCACAATAGATACTGCTGTAGCTTGGCACGTACAA
CAGTAGTCATCCACCAAGGCCAACCTAATACATTAGAAGTCAGTACTCAA
GATTGTAATATACAGCCTCTACATCGCACCTGCCGCCCACTCGTGCTTCT
CGTTTCCACAACAATAACAACCAGAATCCCCACTGAGCAAGAAGCCAAGA
CTCAGCAGCGGTACCGGCGATGACGCCTTCGAAGGCTTGACCAGGTACGG
GAACGGAAACGGGGGCGGTAGCACCTTCGCCATCAACGACGATGACGACG
ATGCCCTCGACGAAGGCGGCGCTGCTGCTGATGATGCCGCGAGCCCGGAA
GGAGTCGACAGCGGTGGCGGTGACGGCGGGGGCACAGCAGTTTGCAAGAA
CAAGAAGAAGCCGTGGAAAGTGCATGCCAGTGCTAGCGGCGGGAAAATGC
ACGACGCCAACCTGTACCGTCATTACCGTCCCGACTTCCGTGAACTGGCG
AGGGAGTATCCGGGTGAGATTTAGGGTTTGAAACGGCCTTCTGCGCAAGG
AACAAAAAAATGACGCTTGTTTGTCTTGACTTTGTCGCACGGAAGGGGTG
GATACCAGTCGTGTCTGCACTCACACGCACCCGCGCGGCAGCGTACCGCT
TTGAATATCCGTTCTTCTTGAACCTCCACGTCAGTACATTGCGTAGAACA
GCAGACACGTTGTTCTTCAGTCGCCGATTTTGTCAATATTTTTATAATTT
GGGACAAGGGAAACTTACGAATCGGACATTGGTCCTTTGGTCCTTTCCTA
CGCACGGACAGACCATCATGATACGCACCTACACCTCCGCATAGTGCCCG
TGTGCGACAGGAACCCGGATCATCACGAACGACCCGCCAACCGGTACCAC
GCCTTTCCACGGAACGCAAGACTTGCATTTGTTGAACGACTCTTTCTGTA
TTTTCCGAACCCCCTTTGTCAACCACACAATCCCCTGCCCGATCAAATAT
ATCGCCACAAGTCACAGCAGTAGTTGCGGATCGCGACGCTACGAACGACC
GATTTCCGTCGATTTTCCATACACCTGTTGTCGCTCCCATATTGTCCGTC
TCATCTTCTGAGGCGTTCTGAACGGTTTCCCTCCCTGTGCTCGAAAACCA
CCCACCATGTGAACCATCACCAGACACGTTCGGCCCCCACGTTCGGGACG
ACCCGGACACGGGTCGCGCGACGATCGACTGGGCGGACCCCGCCGCCATG
AGGGAGCTGACCCGCGTCATGCTCCGGCACGACTTCGGGCTGCGGGAGTG
GGATGCGCCCCTCGACCGCCTGTGCCCCCCTGTGGCCAACCGCCTCAACT
ACATCTGCTGGCTCTCGGACCTCGTGAAGCTCTCGCCGCCGTCGGTGTCA
GCGGGGCGGCATTCTTCGTCGCCGGAGGATGCGTCAGGCGAGGAAGGTGG
GGGAGGGGGGATGACCTCGGCGCAGAGGAACCTGCTTCTGTACGGGACCA
CGCGCGGGGTAGAGGAGGATGGCGGGGAAGGCATGGCCGTGTGCGACGAG
GGCGGCGACGTCGGCGACTTGGACCAGGCGACGGGGGGGGCGAAGAAGCC
TAGCCGTAGAGGCGTCGACGTGGGCACGGGGGCGTCTTGCATCTACCCGC
TTCTGGGGGCAAGGGTGGCGGGGTGGTCGTTCCTGGCGACCGAGATAGAC
CCCGTTTCGGCCGAGTGGGCAGAGAAGAACATTCGTTCCAACGACTTGCA
GGTGCGCCGCGGGTAGTTATAGGTTTAGCGAAGAGGCTCCCTTGTGTGGG
GTAGGGTTTAGACTCCCAACAAACATGTATGTGTGTGCTCAAAGTCTTTC
GTTTGTGTGACGAAACCTCCGAACAGCGCTGGCGTTTTCGAGGCAGAGAG
TTGTTTTCCAGCCGGTTTGGGGCTTTTGGGATGCGTTGTACTCTATCGCA
GGAATACCTTGATAGGCGTCCTGTGTGATGTCGGCAGCATGAGCGTTGAA
GTAGCATTGGCTATCTCCCGCTTACCGACATACGACAGCGAGTCCTTCGT
GCGTGTACATGCAGAAAATGCAGAACGCCGGGGCACCACCGCTGAGCCCC
TTTCAGCACTCAAACGATGTGGTATGTTGTGGTCGAAGCCGCCATGCCCC
GGCCGAGGCTGTCCAATAATGAGGAATGTGTCGAAAAAATATTTTCTGTC
CCGCACGCGGATTGAAATTGGTATGCTTGCGCCGTCATGTCGATCTTCAC
TCTGATTGTACTTGGTTATATTTTCGTGCAATCCCCATTCCCTGCACCCA
TACCACCGTGCCTCTTTCGTTGGATGTTTTCCTCCCTCCACAATCTCAAA
GGAGCAAATTGAGGTTCGGCTGGTCCCTTCGCCTGCGGATGGTGGCGACG
ACGAGGCTTCTCCCGGGCCGCTGTTGGCCGCACTGAGAGAAGAAGACGGA
GACTTCGACTTCTCGATGACGAACCCGCCGTTTTTCGAGTCTGCAGACGA
GGTGAGAGCCTTCGAGTGGAAGGAGGGGTGCGTGTTTGCATGTTTCTTGG
AGTAGCGTCGACTGGGCTAGCCCGCCGACCGCAAGGTGGACGCCTCGTAT
ACCCAGGGATAAACAACGTGGGTATGAGAGAGAGAAAGACAGAAAGAGAG
AGACCGGGACAAAGACATGAGGCAGACAGACAGGCGGGCAGATGTTTCAT
TAGTAGACAGGTGCATTGCGTGCTGCTACAAATGCAAATGCACGTGCAGA
TAACTTTTCCGTGCATCCAGCATTCCGATTCGTTGGCCGCAGACGAAGCG
AATGGAGCTCGCCAACAATTGTGGCAGACGGGGCGCTTTGTACGATTCTG
GCGCCCGTGTGCTCGTGTGTCATGTTTTGGGTGCCTTCTTCGCGACAATT
TCGCCGTCTTTCTGGTCGGCCCGTAGACGAGCATGGTCACACAAACGAGC
GAACAAAGGAACGAAGTATGCCCACACCGCCGCTGTTCGATCTCGACGGA
AGCGGTGTGACGGTGGCCTAAAACCGGTTCGCGGTTCCCGCTGAGTGTTC
TCCCCCCCCCCCCGCCTTTTTTTTGCACGTTGTGCTTGCTTTTCACCGCG
GTGGGCGAAAGGCGGGGCAGAATCCTGACACGGCCACGGGGGACATGGCC
GCCGCAGGGGAGGTGGCGTGCCCCGGAGGGGAGGTGGCCTTCGTGACGAC
CATCATCAGGGACAGCCTCCGCCTCGGGGAGCGGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7079:3723..7409+

>mRNA_Ecto-sp13_S_contig7079.18162.1 ID=mRNA_Ecto-sp13_S_contig7079.18162.1|Name=mRNA_Ecto-sp13_S_contig7079.18162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7079:3723..7409+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAGACCGAGGGCCGACTTCGAAAGCGAGGAGTTCAACGAAGAATC
CCCACTGAGCAAGAAGCCAAGACTCAGCAGCGGTACCGGCGATGACGCCT
TCGAAGGCTTGACCAGGTACGGGAACGGAAACGGGGGCGGTAGCACCTTC
GCCATCAACGACGATGACGACGATGCCCTCGACGAAGGCGGCGCTGCTGC
TGATGATGCCGCGAGCCCGGAAGGAGTCGACAGCGGTGGCGGTGACGGCG
GGGGCACAGCAGTTTGCAAGAACAAGAAGAAGCCGTGGAAAGTGCATGCC
AGTGCTAGCGGCGGGAAAATGCACGACGCCAACCTGTACCGTCATTACCG
TCCCGACTTCCGTGAACTGGCGAGGGAGTATCCGGACACGTTCGGCCCCC
ACGTTCGGGACGACCCGGACACGGGTCGCGCGACGATCGACTGGGCGGAC
CCCGCCGCCATGAGGGAGCTGACCCGCGTCATGCTCCGGCACGACTTCGG
GCTGCGGGAGTGGGATGCGCCCCTCGACCGCCTGTGCCCCCCTGTGGCCA
ACCGCCTCAACTACATCTGCTGGCTCTCGGACCTCGTGAAGCTCTCGCCG
CCGTCGGTGTCAGCGGGGCGGCATTCTTCGTCGCCGGAGGATGCGTCAGG
CGAGGAAGGTGGGGGAGGGGGGATGACCTCGGCGCAGAGGAACCTGCTTC
TGTACGGGACCACGCGCGGGGTAGAGGAGGATGGCGGGGAAGGCATGGCC
GTGTGCGACGAGGGCGGCGACGTCGGCGACTTGGACCAGGCGACGGGGGG
GGCGAAGAAGCCTAGCCGTAGAGGCGTCGACGTGGGCACGGGGGCGTCTT
GCATCTACCCGCTTCTGGGGGCAAGGGTGGCGGGGTGGTCGTTCCTGGCG
ACCGAGATAGACCCCGTTTCGGCCGAGTGGGCAGAGAAGAACATTCGTTC
CAACGACTTGCAGGAGCAAATTGAGGTTCGGCTGGTCCCTTCGCCTGCGG
ATGGTGGCGACGACGAGGCTTCTCCCGGGCCGCTGTTGGCCGCACTGAGA
GAAGAAGACGGAGACTTCGACTTCTCGATGACGAACCCGCCGTTTTTCGA
GTCTGCAGACGAGGTGAGAGCCTTCGAAATCCTGACACGGCCACGGGGGA
CATGGCCGCCGCAGGGGAGGTGGCGTGCCCCGGAGGGGAGGTGGCCTTCG
TGA
back to top