mRNA_Ecto-sp13_S_contig7078.18160.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7078.18160.1
Unique NamemRNA_Ecto-sp13_S_contig7078.18160.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7078.18160.1 vs. uniprot
Match: D7FQB4_ECTSI (U-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.900e-5
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  744 RGKDANKGWLEALGVGFGGNDPPGDA 821
            RGKDANKGWLEALGVGFGGNDPPG A
Sbjct:   53 RGKDANKGWLEALGVGFGGNDPPGFA 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7078.18160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQB4_ECTSI6.900e-596.15U-box domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7078contigEcto-sp13_S_contig7078:3547..5479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size823
Hectar predicted targeting categoryother localisation
Exons3
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.9481316-UTR-Ecto-sp13_S_contig7078:3546..36171681463970.9481316-UTR-Ecto-sp13_S_contig7078:3546..3617Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7078 3547..3617 -
1681463970.958158-UTR-Ecto-sp13_S_contig7078:4661..49671681463970.958158-UTR-Ecto-sp13_S_contig7078:4661..4967Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7078 4662..4967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.9682627-CDS-Ecto-sp13_S_contig7078:4967..52161681463970.9682627-CDS-Ecto-sp13_S_contig7078:4967..5216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7078 4968..5216 -
1681463970.9823098-CDS-Ecto-sp13_S_contig7078:5284..54791681463970.9823098-CDS-Ecto-sp13_S_contig7078:5284..5479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7078 5285..5479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7078.18160.1prot_Ecto-sp13_S_contig7078.18160.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7078 4968..5479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7078.18160.1

>prot_Ecto-sp13_S_contig7078.18160.1 ID=prot_Ecto-sp13_S_contig7078.18160.1|Name=mRNA_Ecto-sp13_S_contig7078.18160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
SPRDDAHRTERGYIAIQSERWLQRRASYLAARRCILLHHSFSAALGIFLT
PSEGHFPRRRVGESQKSVYDQLSREPTPTRNQRAARTAERGSAKHLTGAR
LRPTPNVLAVGVGERYNNFFPRIMIRTTHTTFVGSDPLWHYGTWETV*
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mRNA from alignment at Ecto-sp13_S_contig7078:3547..5479-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7078.18160.1 ID=mRNA_Ecto-sp13_S_contig7078.18160.1|Name=mRNA_Ecto-sp13_S_contig7078.18160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7078:3547..5479- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCCCCGAGACGACGCACACAGGACCGAACGCGGTTATATAGCTATTCA
AAGCGAGCGGTGGCTCCAAAGGAGGGCTTCGTATTTGGCAGCCAGACGTT
GTATACTGCTCCACCACTCCTTCTCCGCTGCTCTTGGTATCTTCCTGACG
CCCAGCGAGGGCCATTTCCCTCGAAGGCGTGTTGGCGAAAGTCAGGCATG
CTCGCAAGTGCCGGATGGGTGCGCCCGCATAAAAACACACGCACCGTACG
CGGGCCAAACAAGAAGAGCGTTTACGACCAGCTCTCGCGTGAGCCCACAC
CAACGAGAAACCAGCGAGCAGCCAGGACTGCCGAGCGGGGCTCAGCCAAA
CACTTGACAGGCGCAAGACTGAGGCCGACACCGAACGTACTGGCTGTTGG
GGTAGGTGAACGGTATAACAATTTTTTTCCACGGATCATGATCAGGACCA
CGCATACCACCTTTGTGGGCTCCGACCCCCTGTGGCACTACGGCACCTGG
GAAACCGTGTAACTCTACAAACTTTCTCGTCAGCCGTGAAATGATTCCGG
TTCTCCCATTTGTGAATGTCGCCTTGGACTGCCTCGTAGATTGTAGCGTC
ATGTGACCCGTCGGAGATCATCTGCCTTCTTCGGGGGATGGTGCCACAGA
TTGAGCCAGTAGACACGCTGAACCCGCGTACAAGTACAGCGGGCCAGCTG
CCGCCCCTCTCTCACGCGTGGTTGAAACTTGGCGTGTCCTCCTCCACGCT
ACACAGCCCGAAGGAAACTTGAAACACGGCAGGGCGAGCCTGGAGACCCC
GTCTTGTATCTGGCGTCAGCGACAGCGGTGCGTTGGGCGCTCCACGATTT
TGTCTCGCGGCAAGTGTGGGGATTTCTTTTGATAGCTTCAGGCGCGTGGT
TGACCCGCCTTTGAGGCCGTAGTGAGTTGACAACATGCAATCAAGACTGG
CGTGTGGCCCATGATGCCCCGCACAATTTCTTTGTTTTTCTCATTACGGC
CTCAAGGACGGTCGACCGCCAGCTTAAAACAAACAAAGAAATCCCCACAT
ATGGCCGCGAGACAAAATGTTTGGAGCTCACAAAGCACTGCCGCCGTCGT
AGACGCCAGATACGAGACGGGCGTCTGCAGGCCCGCGCTCTGTAAGAATT
AGAACACTCGGGACATTTGATTTCATGAAACCACCAGTTGGGATTGAAGG
TAGTACCGCTTTTCCTGGCGAAACGTAAGAAAGGAGTACGCAGACCATAC
GAAGTGGTTTGTGGGGCTGTGGAGGCTGTGGGGGTTACGTGGGTGTGCGG
TAGGGTCAGCGGGGCCCCGACAGTACTCTGTTATCTGTAATGCAGCATTC
AAGGTCCCAGGGCAACTTTTCTCGCTGGGTTTCTGACAAGAGGTTCCCCA
CCACCTTCAAACAGGAGTTCCAAATGAGAAAAGACTCCCAAAGAAGGGCT
CGTATGTACCGCTGTTTTAGAAGAAATAATCCGCGTGGCCCCCGAAAACG
CCCGCGGTCCTCGCGGCAGGTTGTACACGTGTCCTGTTCGACATGGGTAG
CTCATGGACAAAACTTCCCAGTGAGAAAACACAGCACATGGAGTTAAAAC
GTCAAACAGCAGCGATTCCAACAGCATTTACAGGTTGTACCACGCCACCG
TGCAAGATGTCGTTCAAGGCGGCGAAACAATCCGGCACCACTGCAAATAA
TTCATTACTCAAGCAATTCTCAAAATTTGATTTTCAAAAATGAAGCCAAC
CATAATATCACACACGCAACACTCACGGCGCCATATATATATATCTACGC
GGCAGCACCTGTTCAAAGGCCAACGGATGCTCTTGTCACGCTTATAAGCT
CACCTCGCGAAGCCGGGAGGGTCATTTCCGCCGAAGCCTACGCCAAGAGC
CTCAAGCCAGCCCTTGTTGGCGTCCTTCCCTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7078:3547..5479-

>mRNA_Ecto-sp13_S_contig7078.18160.1 ID=mRNA_Ecto-sp13_S_contig7078.18160.1|Name=mRNA_Ecto-sp13_S_contig7078.18160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7078:3547..5479- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCCCCGAGACGACGCACACAGGACCGAACGCGGTTATATAGCTATTCA
AAGCGAGCGGTGGCTCCAAAGGAGGGCTTCGTATTTGGCAGCCAGACGTT
GTATACTGCTCCACCACTCCTTCTCCGCTGCTCTTGGTATCTTCCTGACG
CCCAGCGAGGGCCATTTCCCTCGAAGGCGTGTTGGCGAAAGTCAGAAGAG
CGTTTACGACCAGCTCTCGCGTGAGCCCACACCAACGAGAAACCAGCGAG
CAGCCAGGACTGCCGAGCGGGGCTCAGCCAAACACTTGACAGGCGCAAGA
CTGAGGCCGACACCGAACGTACTGGCTGTTGGGGTAGGTGAACGGTATAA
CAATTTTTTTCCACGGATCATGATCAGGACCACGCATACCACCTTTGTGG
GCTCCGACCCCCTGTGGCACTACGGCACCTGGGAAACCGTGTAA
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