mRNA_Ecto-sp13_S_contig7075.18156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7075.18156.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 263 bits (673), Expect = 2.160e-71 Identity = 161/318 (50.63%), Postives = 202/318 (63.52%), Query Frame = 2
Query: 14 ARLWDTHKAYLKSGYLDKAYLRFLWIHRKIQGAQSSAVILSAAEFESIVSTMARLLVMYGSHDPDKLVVPARLPEYGPESVMSPDNIAEIAVTMQCSFGQVYPPPGIVGRFLAWSTKQVYRYEECWQHGAFLWYNYDRGKYRVLLFES-IDEEIREGKAVRIAGLMFCVQAPPAMAPTVLTALRASLQHLVADEAYGYPGLKCLMSFEDPAEVKSTLLRDLRALLDNRDDLVKAVDRXXXXXXXXXXXXXXX----SGVANQLVQQELLAASAERKEYPYPRLVILVPDGEAYGN--NERIQRVGWDRWRKAWESLSL 946
A L+D H Y +SG L++AYLRFLW+HRKI+G V L+ EFESIVSTM RLLVMY + D D LVVPARL EYG + + PD + + + ++CSFGQVYPPPGIVGRFLAWS +QV Y ECWQHGAF Y Y +Y V L+ES ++E ++G AGL +Q PP A VL LR SL+ LV+D AYGYPGL M F E++S+LL L ++LD XXXXXXXXXX G+ QL++Q+LL AS E+ YP RLV++ P+ E + +ERIQR GWDRW KA +
Sbjct: 663 APLFDIHNVYCRSGRLNRAYLRFLWMHRKIEGP-GPTVDLTDPEFESIVSTMERLLVMYTARDADNLVVPARLQEYGDQRI--PDRLTNMVLKIECSFGQVYPPPGIVGRFLAWSAQQVADYGECWQHGAFFSYKYQYARYDVFLYESEVEEAHQDGTVDMFAGLTLGIQGPPPQAAEVLEELRKSLESLVSDSAYGYPGLVGPMYFRPAEEIESSLLVRLGSVLDXXXXXXXXXXXXXXXXXXXXXSLEETVRKLGGIVTQLLEQDLLPASDEQSAYP--RLVLVRPELETAEDMTHERIQRAGWDRWTKALSEMGF 975
BLAST of mRNA_Ecto-sp13_S_contig7075.18156.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.140e-25 Identity = 97/321 (30.22%), Postives = 152/321 (47.35%), Query Frame = 2
Query: 11 FARLWDTHKAYLKSGYLDKAYLRFLWIHRK--IQGAQSSAVILSAAEFESIVSTMARLLVMYGSHDP-----DKLVVPARLPEYGPESVMSPD-NIAEIAVTMQCSFGQVYPPPGIVGRFLAWSTKQVYRYEECWQHGAFLWYNYDRGKYRVLLFES-IDEEIREGKAVRIAGLMFCVQAPPAMAPTVLTALRASLQHLVADEAYGYPGLKCLMSFEDPAEVKSTLLRDLRALLDNRDDLVKAVDRXXXXXXXXXXXXXXXSGVANQLVQQELLAASAERKEYPYPRLVILVP---------DGEAYGNNERIQRVGWDRW 919
+ L +TH +++ G L++ YLRFLW+HRK ++G + A L F+S+V TM + L +Y SH D +VPARLPE+G ++++ + E+ V F + + P GI+GRFLA+++ + +CWQHGA + + D ++ VLL E+ I+++I G++ + CV+ A A VL + L L+ D +GYPGL+ L FE+ +S D +R V + + + + E PYPRLV+L P E N R WDRW
Sbjct: 1650 YKNLCETHACFIRQGRLNRDYLRFLWVHRKLEVEGDYAGAQ-LDKDAFDSMVDTMIKYLFIYPSHGECSNAEDCHIVPARLPEHGNDNILEESIGLGEVVVGKTAWFLRSHAPTGIIGRFLAFTSSRFEASGKCWQHGAHIQWKKDSNEHDVLLCETTIEKDIIPGQST-FPAIAICVKGKTAEAKGVLREVGEQLLSLLQDNIHGYPGLR-LPIFEELNITQS-------------DQFQVHFERYLATQLAKILEDTRRESVR---MFRAAFPSYGDPVELPYPRLVLLKPVETTSIQETQAEESVNGAIQLRRTWDRW 1951
BLAST of mRNA_Ecto-sp13_S_contig7075.18156.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE) HSP 1 Score: 106 bits (264), Expect = 4.780e-20 Identity = 90/321 (28.04%), Postives = 145/321 (45.17%), Query Frame = 2
Query: 11 FARLWDTHKAYLKSGYLDKAYLRFLWIHRKIQGAQSSA-VILSAAEFESIVSTMARLLVMYGSHDPDK-----LVVPARLPEYGPESVMSPD-NIAEIAVTMQCSFGQVYPPPGIVGRFLAWSTKQVYRYEECWQHGAFLWYNYDRGKYRVLLFES-IDEEIREGKAVRIAGLMFCVQAPPAMAPTVLTALRASLQHLVADEAYGYPGLKCLMSFEDPAEVK-STLLRDLRALLDNRDDLVKAVDRXXXXXXXXXXXXXXXSGVANQLVQQELLAASAERKEYPYPRLVILVP---------DGEAYGNNERIQRVGWDRW 919
+ L +TH +++ G L++ YLRFLW+HRK++ A V L F+S+V TM + L +Y SH +VPARLPE G ++V+ + E+ V F + + P GI+G FLA+++ + ECWQHGA + + D ++ +LL E+ I+++I G + + CV+ A A VL + L L+ D + + FE K +T+L D R + + + + E E YPRLV+L P E+ ++++R WDRW
Sbjct: 204 YKNLCETHTCFIRQGRLNRKYLRFLWVHRKLEVEGGYAGVQLENDTFDSMVDTMIKYLFIYPSHGECSKAEGFYIVPARLPEIGKDNVLEESIGLDEVVVGKTAWFLRSHAPTGIIGCFLAFTSSRFEASGECWQHGAHIQWKKDSNEHDMLLCETTIEKDIIPGPGT-LPAIAICVKGKTAEAKGVLREVGEQLLSLLKDVIH--------VHFERYLATKLATILEDTRR--------------------------------ESVRMFRAAFPSYGEHVELLYPRLVLLKPVETTSIQETQVESVSGAKKLRRT-WDRW 482
BLAST of mRNA_Ecto-sp13_S_contig7075.18156.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 1.460e-6 Identity = 64/223 (28.70%), Postives = 97/223 (43.50%), Query Frame = 3
Query: 948 LTWVPCGPDGLGYPIE--QLKDWVKRCVPLMKASLWILRVAVGTVSNVD-LPLNEVLEAAVKATG---AAVLEGVGTEVPNSVDNDPVP-------VFG----EGATVEQER------GFRDLQ-------------GSAYKFLCDFMREAEPSTPRR-----------LWGCVPCRRPVPPPPDLTPSV--DWKDSMVQVRNRDG----RWAWVLKEHKEAY 1457
LT CG DGLGY +E ++W+K C+P++K SLW+LRV + V+ D LP++ V+E + G A +L + E S D V VFG E A Q+R G D Q G ++LC + R + +TP + + G VP PV P + P+ ++ M + G WAWV + +K+ +
Sbjct: 964 LTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQDLVDKVNAQEQVFGTAYAELAKWVQQREDKIGDGGDDAQTAGNTVGGGAADGGRGCRWLCSWWRRSHNNTPAQPPDAGCAMSGNVTGGVPAA-PVAPVSTVAPAGKRSFESDMELASRQRGTEAPEWAWVRRVNKDKW 1185 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7075.18156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7075.18156.1 >prot_Ecto-sp13_S_contig7075.18156.1 ID=prot_Ecto-sp13_S_contig7075.18156.1|Name=mRNA_Ecto-sp13_S_contig7075.18156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp MARLLVMYGSHDPDKLVVPARLPEYGPESVMSPDNIAEIAVTMQCSFGQVback to top mRNA from alignment at Ecto-sp13_S_contig7075:3270..6163+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7075.18156.1 ID=mRNA_Ecto-sp13_S_contig7075.18156.1|Name=mRNA_Ecto-sp13_S_contig7075.18156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7075:3270..6163+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7075:3270..6163+ >mRNA_Ecto-sp13_S_contig7075.18156.1 ID=mRNA_Ecto-sp13_S_contig7075.18156.1|Name=mRNA_Ecto-sp13_S_contig7075.18156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7075:3270..6163+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |