mRNA_Ecto-sp13_S_contig7075.18155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7075.18155.1
Unique NamemRNA_Ecto-sp13_S_contig7075.18155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7075.18155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7075contigEcto-sp13_S_contig7075:65..1240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons4
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.6012442-CDS-Ecto-sp13_S_contig7075:64..1441681463970.6012442-CDS-Ecto-sp13_S_contig7075:64..144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7075 65..144 -
1681463970.6110873-CDS-Ecto-sp13_S_contig7075:298..3701681463970.6110873-CDS-Ecto-sp13_S_contig7075:298..370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7075 299..370 -
1681463970.6200595-CDS-Ecto-sp13_S_contig7075:775..8471681463970.6200595-CDS-Ecto-sp13_S_contig7075:775..847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7075 776..847 -
1681463970.628718-CDS-Ecto-sp13_S_contig7075:1155..12401681463970.628718-CDS-Ecto-sp13_S_contig7075:1155..1240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7075 1156..1240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7075.18155.1prot_Ecto-sp13_S_contig7075.18155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7075 65..1240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7075.18155.1

>prot_Ecto-sp13_S_contig7075.18155.1 ID=prot_Ecto-sp13_S_contig7075.18155.1|Name=mRNA_Ecto-sp13_S_contig7075.18155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
IAGPAPPEHRGLAALRYPHFWRNRLRGDGPIPPELGGLSKLETLWLTNNK
LAGSIPKELGDLRELRQLWLNSNRLTGHIPLQLGDLCALKSLYLYNNKLD
GEL
back to top

mRNA from alignment at Ecto-sp13_S_contig7075:65..1240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7075.18155.1 ID=mRNA_Ecto-sp13_S_contig7075.18155.1|Name=mRNA_Ecto-sp13_S_contig7075.18155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1176bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7075:65..1240- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGCAGGTCCCGCTCCGCCCGAGCATCGGGGGCTCGCCGCACTGAGGTA
TCCTCATTTTTGGAGAAACCGGCTACGCGGTGATGGTTCATCTACACGTA
TTTCATGTATTCCCCCACGGAATCTTGGGTGAATCCTGTGTGCGTTGGCG
ATTGGGTTTTAGGAGCACTAGCAAAACAATAAAAAAGTCCCAGCAACTTC
CAACTCGCTGCTCTCATGTCCCATACCAAACGAGCTGGGAGCTCTCAGCG
AGCTGCGGGGGCTACATCCGGACGACAACCAAAAAAAATCCCCCGGCGTC
TAGAAAAACGGTCCTGCCAACGTCTTGAAAACAGAGAGGCGGATAGAGTA
AAAAAGGTTTCTCGCTGAATCCATGCATGAACTTTCGCGGCAGGGCCGAT
CCCGCCGGAGCTCGGGGGGCTCAGTAAGCTGGAGACACTTTGGCTCACAA
ACAACAAACTCGCAGGTGAGACATGCATACATGGATATCGCCTGCGCCGT
GGACGCCAACTAGTTGGCGGGAAAAGATCTACGGAGATCAGTCGTCTTGA
AATTAGAGAGGCGGCTTAATGTTTTTTGTTTCCGGCTTGGTTTCTATCGC
ACTTTACGACCCCATCCCGCCGGAGCTCGGGAACCTTGCAGCGCTGCAAC
GCCTCTCCCTTGGCAGCAATGGGCTAGCCGGTGAGTCATGGAGCGCATCA
TGAAATTTGCAAGATTCGGAGGGGAGATAAAAGAAAAATCCCAGCGCTTT
CTGTACAAAAGTTTCGTGGACGCCAACTAGTTGGCGGGACAAGATCTACG
GAGATCGACAATAGCCAGCGGGCAATTTCTTATTATTCCCCCCATGTTTG
TATAATTCTTCTGCGCACAGGCTCCATCCCGAAGGAGCTGGGAGATCTCC
GAGAGCTGCGGCAGCTGTGGCTCAACAGCAACCGGCTCACAGGTAACCTT
TTTAATTTACAGTGGTTTCAAATATTTTTGGATGAACCTTGCCGGCGAGT
GGACGCCAACGCGTAGGCGAGTAGGAAATTTCAGAACTCGCGGGTTGACT
TTTCTGTACCCTGCCCAACTGCCCAACGTTAACTTTCTCATTACAGGCCA
TATCCCGCTGCAGCTGGGAGATCTTTGCGCCCTCAAGAGTCTCTACCTCT
ACAACAACAAGTTAGATGGTGAGTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7075:65..1240-

>mRNA_Ecto-sp13_S_contig7075.18155.1 ID=mRNA_Ecto-sp13_S_contig7075.18155.1|Name=mRNA_Ecto-sp13_S_contig7075.18155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7075:65..1240- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGCAGGTCCCGCTCCGCCCGAGCATCGGGGGCTCGCCGCACTGAGGTA
TCCTCATTTTTGGAGAAACCGGCTACGCGGTGATGGGCCGATCCCGCCGG
AGCTCGGGGGGCTCAGTAAGCTGGAGACACTTTGGCTCACAAACAACAAA
CTCGCAGGCTCCATCCCGAAGGAGCTGGGAGATCTCCGAGAGCTGCGGCA
GCTGTGGCTCAACAGCAACCGGCTCACAGGCCATATCCCGCTGCAGCTGG
GAGATCTTTGCGCCCTCAAGAGTCTCTACCTCTACAACAACAAGTTAGAT
GGTGAGTTG
back to top