mRNA_Ecto-sp13_S_contig70740.18154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70740.18154.1
Unique NamemRNA_Ecto-sp13_S_contig70740.18154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: D7FSD7_ECTSI (Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.490e-33
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   10 NPQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            N QECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG
Sbjct:  304 NSQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 363
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: A0A6A3S396_9STRA (Nicastrin n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S396_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.850e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   19 ECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            +CL +T+I G RSP+C P+GGQSSWA  G   L  ++ V+AV+GMD+TS+ H  APG
Sbjct:  211 KCLNFTNIYGHRSPKCDPIGGQSSWAMRGN--LKSKEIVMAVAGMDATSISHVLAPG 265
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: G4ZR63_PHYSP (Nicastrin n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZR63_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 9.370e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   10 NPQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            N  +CL +T+I G+RSP+C P+GGQSSWA  G    G  + V+A++GMD+TS+ H  APG
Sbjct:  208 NSLKCLNFTNIYGNRSPKCDPIGGQSSWAMRGNLKSG--EIVMAMAGMDATSVSHVLAPG 265
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: A0A0P1B109_PLAHL (Nicastrin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B109_PLAHL)

HSP 1 Score: 64.7 bits (156), Expect = 1.280e-10
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 QRRNPQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            ++ N  +CL +T+I GDRSP C P+GGQSSWA  G   L  ++ V+A++GMD+T++    APG
Sbjct:  203 EKMNSLKCLSFTNIYGDRSPMCDPIGGQSSWAMRGN--LASKEIVMAMAGMDATALSPVLAPG 263
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: H3GV47_PHYRM (Nicastrin n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GV47_PHYRM)

HSP 1 Score: 64.7 bits (156), Expect = 1.280e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   10 NPQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            N  +CL +T+I G RSP+C P+GGQSSWA  G   L   + V+A++GMD+TS+ H  APG
Sbjct:  206 NSIKCLNFTNIYGKRSPKCDPIGGQSSWAMRGN--LESEEIVMAMAGMDATSLSHVLAPG 263
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: A0A662XXH7_9STRA (PEROXIDASE_4 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXH7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.260e-10
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   10 NPQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            N  +CL +T+I G+RSP+C P+GGQSSWA  G   L     VL ++GMD+T++ H  APG
Sbjct:  576 NSLDCLAFTNIYGNRSPKCDPIGGQSSWAMRGN--LDAEXXVLVMAGMDATALSHVLAPG 633
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: V9FWN4_PHYPR (Nicastrin n=11 Tax=Phytophthora TaxID=4783 RepID=V9FWN4_PHYPR)

HSP 1 Score: 63.5 bits (153), Expect = 3.270e-10
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   10 NPQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            N  +CL +T+I G+RSP+C P+GGQSSWA  G    G  + V+A++GMD+ S+ H  APG
Sbjct:  204 NSLKCLSFTNIYGNRSPKCDPIGGQSSWAMRGNLKSG--EIVMAMAGMDANSLSHVLAPG 261
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: A0A7S2V4V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.440e-10
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   19 ECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAP 186
            +CL W DI+G+R PQC PLGG S+WAS+ G     +  V   + +DS ++FHD+ P
Sbjct:   18 DCLAWQDIDGERDPQCLPLGGLSTWASLPGPPDPVKPKVFLTAAIDSATLFHDQVP 73
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: A0A7S2W2W1_9STRA (Nicastrin (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2W1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.550e-10
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   22 CLGWTDIN-GDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            CL W DI+ G+ SP+C PLGG S WAS  G  LG ++T+   S +D+TSMFHD A G
Sbjct:  210 CLTWKDISDGNWSPKCLPLGGNSVWASTQGQ-LGQKKTLFLTSNLDATSMFHDAASG 265
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BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Match: A0A3M6VQN6_9STRA (Nicastrin n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQN6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.560e-9
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   19 ECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 189
            +CL + +I+GDRSP+C P+GGQS+WA  G   L  ++ V+A++GMD+TS+ H  A G
Sbjct:  216 KCLKFVNIHGDRSPKCDPIGGQSAWAMRGN--LKSKEIVMAMAGMDTTSLSHVLASG 270
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70740.18154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FSD7_ECTSI4.490e-3398.33Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6A3S396_9STRA6.850e-1154.39Nicastrin n=3 Tax=Phytophthora TaxID=4783 RepID=A0... [more]
G4ZR63_PHYSP9.370e-1151.67Nicastrin n=1 Tax=Phytophthora sojae (strain P6497... [more]
A0A0P1B109_PLAHL1.280e-1047.62Nicastrin n=1 Tax=Plasmopara halstedii TaxID=4781 ... [more]
H3GV47_PHYRM1.280e-1051.67Nicastrin n=1 Tax=Phytophthora ramorum TaxID=16432... [more]
A0A662XXH7_9STRA3.260e-1050.00PEROXIDASE_4 domain-containing protein (Fragment) ... [more]
V9FWN4_PHYPR3.270e-1050.00Nicastrin n=11 Tax=Phytophthora TaxID=4783 RepID=V... [more]
A0A7S2V4V2_9STRA4.440e-1046.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2W2W1_9STRA6.550e-1054.39Nicastrin (Fragment) n=1 Tax=Eucampia antarctica T... [more]
A0A3M6VQN6_9STRA1.560e-949.12Nicastrin n=1 Tax=Peronospora effusa TaxID=542832 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70740contigEcto-sp13_S_contig70740:71..262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score128.6
Seed ortholog evalue1e-27
Seed eggNOG ortholog2880.D7FSD7
Preferred nameNCSTN
Model size192
KEGG koko:K06171
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001775,GO:0002252,GO:0002262,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006955,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007220,GO:0007267,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0008594,GO:0009653,GO:0009790,GO:0009887,GO:0009987,GO:0010467,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016485,GO:0016787,GO:0018991,GO:0019098,GO:0019538,GO:0022008,GO:0022414,GO:0022603,GO:0023052,GO:0030141,GO:0030154,GO:0030182,GO:0030587,GO:0030659,GO:0030667,GO:0031090,GO:0031154,GO:0031224,GO:0031226,GO:0031293,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033619,GO:0034205,GO:0034641,GO:0035295,GO:0035333,GO:0035577,GO:0036230,GO:0042051,GO:0042098,GO:0042110,GO:0042119,GO:0042461,GO:0042462,GO:0042478,GO:0042582,GO:0042592,GO:0042982,GO:0042987,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043603,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044671,GO:0045055,GO:0045165,GO:0045168,GO:0045314,GO:0045321,GO:0045463,GO:0045465,GO:0045595,GO:0045664,GO:0046331,GO:0046530,GO:0046532,GO:0046649,GO:0046651,GO:0046903,GO:0048468,GO:0048513,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048837,GO:0048856,GO:0048869,GO:0048872,GO:0050435,GO:0050673,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051604,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0055037,GO:0055123,GO:0060284,GO:0060465,GO:0060581,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070661,GO:0070765,GO:0071704,GO:0071840,GO:0071944,GO:0090596,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099503,GO:0140096,GO:1901564,GO:2000026,GO:2000027
Exons1
EggNOG free text desc.Notch signaling pathway
EggNOG OGsKOG2657@1,KOG2657@2759
Cds size192
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.5650344-CDS-Ecto-sp13_S_contig70740:70..2621681463970.5650344-CDS-Ecto-sp13_S_contig70740:70..262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70740 71..262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70740.18154.1prot_Ecto-sp13_S_contig70740.18154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70740 71..262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70740.18154.1

>prot_Ecto-sp13_S_contig70740.18154.1 ID=prot_Ecto-sp13_S_contig70740.18154.1|Name=mRNA_Ecto-sp13_S_contig70740.18154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
QRRNPQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSG
MDSTSMFHDRAPG*
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mRNA from alignment at Ecto-sp13_S_contig70740:71..262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70740.18154.1 ID=mRNA_Ecto-sp13_S_contig70740.18154.1|Name=mRNA_Ecto-sp13_S_contig70740.18154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70740:71..262+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACGACGTAACCCTCAGGAGTGTCTGGGGTGGACGGACATCAACGGCGA
CAGATCCCCACAGTGCAAGCCACTGGGAGGGCAGAGCTCGTGGGCGTCGG
TCGGGGGTGCGGGGCTGGGGGGTCGGCAGACTGTACTGGCCGTGTCGGGC
ATGGACTCGACCTCAATGTTCCACGATCGGGCCCCTGGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70740:71..262+

>mRNA_Ecto-sp13_S_contig70740.18154.1 ID=mRNA_Ecto-sp13_S_contig70740.18154.1|Name=mRNA_Ecto-sp13_S_contig70740.18154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70740:71..262+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACGACGTAACCCTCAGGAGTGTCTGGGGTGGACGGACATCAACGGCGA
CAGATCCCCACAGTGCAAGCCACTGGGAGGGCAGAGCTCGTGGGCGTCGG
TCGGGGGTGCGGGGCTGGGGGGTCGGCAGACTGTACTGGCCGTGTCGGGC
ATGGACTCGACCTCAATGTTCCACGATCGGGCCCCTGGTTAG
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