mRNA_Ecto-sp13_S_contig7074.18152.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7074.18152.1
Unique NamemRNA_Ecto-sp13_S_contig7074.18152.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: D7FT75_ECTSI (Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT75_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 7.210e-75
Identity = 308/349 (88.25%), Postives = 311/349 (89.11%), Query Frame = 2
Query:    2 SQRYSTLALCNLSSGEHKARIVSEGAVRPLTFLARFPDLEIQRYAALAIAGLALGDHGKPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKSAVMHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKEKANIGFGATVLQSNTDSKARRAQKQTQEHLD 1048
            SQRYSTLALCNLSSGEHKAR                                     GKPPN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTK+AVMHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARL+ELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKEKANIGFGATVLQSNTDSKARRAQKQTQEHL+
Sbjct: 3427 SQRYSTLALCNLSSGEHKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPPNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKTAVMHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARLIELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKEKANIGFGATVLQSNTDSKARRAQKQTQEHLE 3775          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: T0SIR8_SAPDV (Vacuolar protein 8 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SIR8_SAPDV)

HSP 1 Score: 117 bits (292), Expect = 3.460e-24
Identity = 228/351 (64.96%), Postives = 267/351 (76.07%), Query Frame = 2
Query:    2 SQRYSTLALCNLSSGEHKARIVSEGAVRPLTFLARFPDLEIQRYAALAIAGLALGDHGKPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKSAVMHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKEKAN-IGFGATVLQSNTDS-KARRAQKQTQEHLD 1048
            SQRYSTLA+CNL+SG  K  IV  GAVRPL  L RFPD EI        AGLALGDHG   NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    ++ D +CVR A+Y +GS+ E   V  +L+ELGA+ ++V Q+   D+E  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ++M+V AEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXX    RARSTDEELQYKA++++G LA+NA K++PKG+   + +G GA+ + + T+  +AR+A++ T E+++
Sbjct: 3347 SQRYSTLAICNLASGPDKVAIVEAGAVRPLLHLVRFPDHEIXXXXXXXXAGLALGDHGH--NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASDMECVRIALYCVGSIAEHIDVLTKLLELGALAHIVHQSRQPDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALRPLIAIMSVNAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARARSTDEELQYKASMSLGQLAANATKVMPKGRHSNDGVGAGASRMAATTEQLQARKARETTTEYIE 3695          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A482RX95_9ARCH (Vacuolar protein 8 (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX95_9ARCH)

HSP 1 Score: 103 bits (258), Expect = 6.500e-20
Identity = 183/319 (57.37%), Postives = 215/319 (67.40%), Query Frame = 2
Query:    2 SQRYSTLALCNLSSGEHKARIVSEGAVRPLTFLARFPDLEIQRYAALAIAGLALGDHGKPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKSAVMHEDGLFPLLELVNSDD--GDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGK 952
            SQRY+TL LCNL + + K  ++ +G +RPL FL  FPD EIQRYA+LA+AG+ALG   K  +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  ++  +    D +  AVY LGS+CE + VK R V+   +  VV   S GD+E+K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +M++ +AEP+H                            LRLGR R+TD++LQYKAALT+G LA+NAVKLLP  +
Sbjct: 1519 SQRYATLTLCNLCASQMKGLLLEQGVLRPLIFLMHFPDPEIQRYASLALAGVALGT--KSVSKVQIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNILQREHLGRDLLHAAVYCLGSICEHEDVKMRFVDSHGIQLVVRHLSTGDMEMKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVRPLVTMLSSDAEPKHYAGLALLKLADNFENHLRIAEEGGIQALLRLGRTRTTDDQLQYKAALTLGQLATNAVKLLPNAQ 1835          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A6A4ZFQ5_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZFQ5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.530e-19
Identity = 205/362 (56.63%), Postives = 240/362 (66.30%), Query Frame = 2
Query:    2 SQRYSTLALCNLSSGEHKARIVSEG----AVRPLTFLARFPDLEIQRYAALAIAGLALGDHGKPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKSAVMHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGK-EKANIGFGATVLQSNTDS-KARRAQKQTQEHLDHVADERK 1069
            SQR+STLA+CNLS G+ KA IV       AVRPL  L                      DHG   N         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    +S D +C+R A+Y +GSL E+  V  +L+ELGA+ N+V Q    D+EV+                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MM+V AEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+ RARSTDEELQYKA++++G LASNA KL+PKGK    ++G  A+ + + T+  +AR+A++QTQE+L+    + K
Sbjct:   64 SQRFSTLAVCNLSCGDDKAFIVXXXXXXXAVRPLMHLVXXXXXXXXXXXXXXXXXXXXXDHGS--NKIRMIEDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSADLECIRIAIYCIGSLAENMDVLVKLIELGALANIVHQCRLPDLEVRRNCGYFFALVVEHHEFHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMSVNAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIARARSTDEELQYKASMSLGQLASNATKLIPKGKLSNDSVGGSASRMAAATEHLQARKAREQTQEYLEKKIQKEK 423          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A067BT72_SAPPC (Vacuolar protein 8 (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BT72_SAPPC)

HSP 1 Score: 97.1 bits (240), Expect = 9.270e-18
Identity = 105/171 (61.40%), Postives = 119/171 (69.59%), Query Frame = 2
Query:    2 SQRYSTLALCNLSSGEHKARIVSEGAVRPLTFLARFPDLEIQRYAALAIAGLALGDHGKPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKSAVMHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVK 514
            SQRYSTLA+CNL+SG  K  IV  GAVRPL  L RFPD EIQRYAALA+AGLAL DHG   NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         +CVR A+Y +GS+ E   V  +L+ELGA+V++V  +   D+EVK
Sbjct:  582 SQRYSTLAICNLASGPDKVAIVETGAVRPLLHLVRFPDHEIQRYAALALAGLALSDHGH--NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIECVRIALYCVGSIAEHMDVLTKLLELGALVHIVHHSRQPDLEVK 750          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A2R5GK93_9STRA (Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK93_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-17
Identity = 141/195 (72.31%), Postives = 155/195 (79.49%), Query Frame = 2
Query:  362 LVNSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPK 946
            + NS D  CVRTA+Y +G  CE++ VKAR++E G +V V+ QA+ GD+EVK                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +MM+ +AEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRL RARSTDEELQYKAALTVGHLASNAVK LPK
Sbjct: 3531 VANSRDLMCVRTALYCIGCCCETEEVKARIMEQGGLVTVLSQAANGDMEVKRNCGYVLALLAESMVYHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRPLVAMMSTQAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLARARSTDEELQYKAALTVGHLASNAVKFLPK 3725          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A485LIX7_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIX7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.320e-17
Identity = 103/235 (43.83%), Postives = 135/235 (57.45%), Query Frame = 2
Query:  371 SDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKEKAN-IGFGATVLQSNTDS-KARRAQKQTQEHLDHVADERK 1069
            S D +C+R A+Y LGSL E+  V  +L+ELGA+ N+V Q    D+EV+                                    XXX                         X      SMM+V AEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLR+ RARSTDEELQYKA++++G LASNA KL+PKGK   + +G GA+ + + T++ +AR+A++QTQ++L+    + K
Sbjct: 3471 STDLECIRIAIYCLGSLGENMDVLLKLIELGALANLVHQCRLPDLEVRRSCGYFFALVVEHHEFHDDFVSEGGMTTVISLASIEXXXCQEYATFGLAHLASNRDYQVKLVEHXALRPLISMMSVNAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRIARARSTDEELQYKASMSLGQLASNATKLIPKGKLTNDAVGGGASRMAAATENLQARKAREQTQDYLEKKIQKEK 3705          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A7S2HPT1_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPT1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.400e-17
Identity = 97/168 (57.74%), Postives = 121/168 (72.02%), Query Frame = 2
Query:    5 QRYSTLALCNLSSGEHKARIVSEGAVRPLTFLARFPDLEIQRYAALAIAGLALGDHGKPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTKSAVMHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIE 508
            QRY++L L N+SS  +K +IV  GAV+PL FLARFPDL++++YAALA+ GLALG+HG+  N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   V+  D +    A+YALG+L E   VK+++VE+GA+ +VV +   GDIE
Sbjct:  307 QRYASLTLANISSSPYKVQIVEGGAVKPLMFLARFPDLDVRKYAALALGGLALGNHGE--NKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDGTDSESSCMAIYALGTLTEHKDVKSKIVEIGAIASVVERGDGGDIE 472          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A7S2XVB4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVB4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.360e-16
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  845 LRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKEKAN-----IGFGATVLQSNTDSKARRAQKQTQEHL 1045
            LRLGRARSTDEELQYKAALTVGHLASNAVK+LPKGK K +     +GFG +V+QS     +++ + QT++ +
Sbjct:   36 LRLGRARSTDEELQYKAALTVGHLASNAVKMLPKGKGKGSGLSEEVGFGISVMQSRAQEASKKGRDQTKDFI 107          
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Match: A0A397F5W8_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F5W8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.650e-16
Identity = 148/236 (62.71%), Postives = 180/236 (76.27%), Query Frame = 2
Query:  368 NSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNVVGQASFGDIEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMAVEAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGK-EKANIGFGATVLQSNTDS-KARRAQKQTQEHLDHVADERK 1069
            +S D +C+R A+Y +GSL E+  V  +L+ELGA+ N+V Q    D+EV+                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MM+V AEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+ RARSTDEELQYKA++++G LASNA KL+PKGK    ++G  A+ + + T+  +AR+A++QTQE+L+    + K
Sbjct: 2179 SSADLECIRIAIYCIGSLAENMDVLVKLIELGALANIVHQCRLPDLEVRRNCGYFFALVVEHHEFHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMSVNAEPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIARARSTDEELQYKASMSLGQLASNATKLIPKGKLSNDSVGGSASRMAAATEHLQARKAREQTQEYLEKKIQKEK 2414          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7074.18152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT75_ECTSI7.210e-7588.25Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 R... [more]
T0SIR8_SAPDV3.460e-2464.96Vacuolar protein 8 n=1 Tax=Saprolegnia diclina (st... [more]
A0A482RX95_9ARCH6.500e-2057.37Vacuolar protein 8 (Fragment) n=1 Tax=archaeon Tax... [more]
A0A6A4ZFQ5_9STRA5.530e-1956.63Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI... [more]
A0A067BT72_SAPPC9.270e-1861.40Vacuolar protein 8 (Fragment) n=1 Tax=Saprolegnia ... [more]
A0A2R5GK93_9STRA1.740e-1772.31Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana ... [more]
A0A485LIX7_9STRA2.320e-1743.83Vacuolar protein 8 n=1 Tax=Aphanomyces stellatus T... [more]
A0A7S2HPT1_9STRA3.400e-1757.74Vacuolar protein 8 (Fragment) n=1 Tax=Dictyocha sp... [more]
A0A7S2XVB4_9STRA1.360e-1661.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A397F5W8_9STRA1.650e-1662.71Vacuolar protein 8 (Fragment) n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7074contigEcto-sp13_S_contig7074:2336..4053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score238.0
Seed ortholog evalue5.9e-60
Seed eggNOG ortholog2880.D7FT75
Model size1331
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.nucleus-vacuole junction assembly
EggNOG OGsKOG0167@1,KOG0167@2759,KOG4224@1,KOG4224@2759
Cds size960
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.3957837-UTR-Ecto-sp13_S_contig7074:2335..26631681463970.3957837-UTR-Ecto-sp13_S_contig7074:2335..2663Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7074 2336..2663 +
1681463970.4367788-UTR-Ecto-sp13_S_contig7074:4010..40531681463970.4367788-UTR-Ecto-sp13_S_contig7074:4010..4053Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7074 4011..4053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.4065607-CDS-Ecto-sp13_S_contig7074:2663..30231681463970.4065607-CDS-Ecto-sp13_S_contig7074:2663..3023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7074 2664..3023 +
1681463970.415911-CDS-Ecto-sp13_S_contig7074:3381..37431681463970.415911-CDS-Ecto-sp13_S_contig7074:3381..3743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7074 3382..3743 +
1681463970.4277434-CDS-Ecto-sp13_S_contig7074:3772..40101681463970.4277434-CDS-Ecto-sp13_S_contig7074:3772..4010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7074 3773..4010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7074.18152.1prot_Ecto-sp13_S_contig7074.18152.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7074 2664..4010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7074.18152.1

>prot_Ecto-sp13_S_contig7074.18152.1 ID=prot_Ecto-sp13_S_contig7074.18152.1|Name=mRNA_Ecto-sp13_S_contig7074.18152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
MHEDGLFPLLELVNSDDGDCVRTAVYALGSLCESDPVKARLVELGAVVNV
VGQASFGDIEVKRAAGYFLALLCETREFHDDLAREGGLQAVVALASLEDV
ECQEYAAFSLAHLSSNHEYQVTLVELGALRPLVSMMAVEAEPRHYAGLAL
LKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNA
VKLLPKGKEKANIGFGATVLQSNTDSKARRAQKQTQEHLDHVADERKLKA
VLIVVGGREWEWLCCFACLRCGVLHIWLARRNTHSRCIVINCWVTWGGIE
LAFVPSTLAPVYTPSDALA*
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mRNA from alignment at Ecto-sp13_S_contig7074:2336..4053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7074.18152.1 ID=mRNA_Ecto-sp13_S_contig7074.18152.1|Name=mRNA_Ecto-sp13_S_contig7074.18152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1718bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7074:2336..4053+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCAGCGATACTCCACCCTTGCGCTCTGCAACTTGTCTTCCGGGGAGC ACAAGGCGCGGATCGTCAGCGAGGGGGCCGTTCGGCCGCTCACGTTCCTG GCCCGGTTCCCTGACCTCGAGATACAGCGGTATGCGGCGCTCGCGATCGC CGGCCTAGCCCTTGGAGATCATGGCAAGCCCCCAAACAAGCTTCGAATAA CCGAGGAGGGTGCTTTGAAGCCGCTCATCGACCTCGTGCGATTCCCGGAG GCCGAGGTGCAGCGGTGCGCGTGCCTCGCCGTGAATGCCGTGGCCCTCGG CACCCACAGCTCGACGAAATCGGCGGTCATGCACGAGGACGGGCTCTTCC CTCTCCTGGAGCTGGTCAACTCTGACGACGGCGACTGCGTGAGAACGGCG GTGTACGCGCTGGGTTCCCTGTGCGAGAGCGACCCGGTCAAAGCGAGGCT AGTCGAGCTCGGTGCCGTCGTGAATGTGGTCGGCCAAGCCAGCTTCGGCG ACATCGAGGTCAAGCGCGCCGCCGGGTACTTCCTGGCCTTGTTGTGCGAA ACGAGAGAGTTCCACGACGACCTGGCGAGGGAGGGTGGGCTCCAGGCGGT GGTGGCACTCGCGAGTCTTGAAGATGTCGAGTGCCAAGAGTACGCAGCGT TTTCCTTGGCGCACTTGTCCAGCAATCACGAGTACCAGGTAATTTGTGTG CGTGGGACAGCCTTTATACCCAGGGGCGTTGTCGGCCGGGTGGACTACCC ACCGCCTGATGACGGCTCATCTCCATCGGGGTCGAAACGTGTGGATTTCG TCTCCGCGGCAAGGAAGGTCTGAGCGGCGTCGCGTAATACCATGGGACAG CCTCTTGTGCAGGAGGTAGTGCTGCGTTTTGTGTGGTCCCACCTCAGTGA AGTGCAATTCAGGAAAAGAAGGGTTCAGCTAGAATTGGCGTGACTGCAGG TATATTTCGTTAGTATTGAATCCAGCTCACACCTAACCTCCAATTTATCC CCGACCGCTTCGTACGACCACCTCGACGCAAATCAACACTTCGAAGGTTA CGCTTGTGGAGCTCGGCGCACTGCGTCCCCTGGTGAGCATGATGGCGGTT GAGGCCGAGCCACGCCACTACGCCGGGCTTGCACTCCTCAAGCTGGCGGA CAACTTCGAGAACCACATCCGCATCGCGGAAGAGGGCGGCATCCAAGCCC TCCTGAGGCTCGGCCGAGCGCGATCCACGGACGAGGAGCTGCAATACAAG GCCGCGCTGACCGTGGGTCATCTGGCATCCAACGCAGTAAAGCTGCTACC CAAGGGCAAGGAGAAGGCAAACATCGGGTTCGGAGCAACCGTGCTGCAGA GCAACACCGACAGCAAGGCACGGCGAGCACAAAAGCAGACGCAAGAACAT TTGGACCAGTCATTGCGAGCTGGATAGTTTTGTAGAGTGTTGCCGACGAG AGAAAGTTGAAGGCGGTTTTGATTGTGGTTGGGGGCAGGGAATGGGAATG GTTGTGTTGCTTCGCTTGTCTGAGATGTGGAGTCTTGCATATTTGGCTAG CCCGTAGGAACACCCACAGCCGCTGTATCGTGATTAATTGTTGGGTCACC TGGGGAGGGATTGAGTTGGCGTTCGTCCCATCTACTCTGGCGCCCGTCTA CACACCATCCGACGCGTTGGCTTGACGTAGTAGCCGGGGGACTGGGGGAT ACGCAAATGGGAACGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7074:2336..4053+

>mRNA_Ecto-sp13_S_contig7074.18152.1 ID=mRNA_Ecto-sp13_S_contig7074.18152.1|Name=mRNA_Ecto-sp13_S_contig7074.18152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7074:2336..4053+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGAGGACGGGCTCTTCCCTCTCCTGGAGCTGGTCAACTCTGACGA
CGGCGACTGCGTGAGAACGGCGGTGTACGCGCTGGGTTCCCTGTGCGAGA
GCGACCCGGTCAAAGCGAGGCTAGTCGAGCTCGGTGCCGTCGTGAATGTG
GTCGGCCAAGCCAGCTTCGGCGACATCGAGGTCAAGCGCGCCGCCGGGTA
CTTCCTGGCCTTGTTGTGCGAAACGAGAGAGTTCCACGACGACCTGGCGA
GGGAGGGTGGGCTCCAGGCGGTGGTGGCACTCGCGAGTCTTGAAGATGTC
GAGTGCCAAGAGTACGCAGCGTTTTCCTTGGCGCACTTGTCCAGCAATCA
CGAGTACCAGGTTACGCTTGTGGAGCTCGGCGCACTGCGTCCCCTGGTGA
GCATGATGGCGGTTGAGGCCGAGCCACGCCACTACGCCGGGCTTGCACTC
CTCAAGCTGGCGGACAACTTCGAGAACCACATCCGCATCGCGGAAGAGGG
CGGCATCCAAGCCCTCCTGAGGCTCGGCCGAGCGCGATCCACGGACGAGG
AGCTGCAATACAAGGCCGCGCTGACCGTGGGTCATCTGGCATCCAACGCA
GTAAAGCTGCTACCCAAGGGCAAGGAGAAGGCAAACATCGGGTTCGGAGC
AACCGTGCTGCAGAGCAACACCGACAGCAAGGCACGGCGAGCACAAAAGC
AGACGCAAGAACATTTGGACCATGTTGCCGACGAGAGAAAGTTGAAGGCG
GTTTTGATTGTGGTTGGGGGCAGGGAATGGGAATGGTTGTGTTGCTTCGC
TTGTCTGAGATGTGGAGTCTTGCATATTTGGCTAGCCCGTAGGAACACCC
ACAGCCGCTGTATCGTGATTAATTGTTGGGTCACCTGGGGAGGGATTGAG
TTGGCGTTCGTCCCATCTACTCTGGCGCCCGTCTACACACCATCCGACGC
GTTGGCTTGA
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