mRNA_Ecto-sp13_S_contig12147.1815.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12147.1815.1
Unique NamemRNA_Ecto-sp13_S_contig12147.1815.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: A0A6H5JXU0_9PHAE (SGNH_hydro domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXU0_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 1.110e-125
Identity = 185/199 (92.96%), Postives = 194/199 (97.49%), Query Frame = 1 
Query:    1 LLQELLGKEGGKTRSGWGSLAVWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAVHSGLRDN 597
            + +ELLG+ GGKT+SGWGSLAVWL YYAYLGAINLGVAGD+TQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDA+DTVGGVKAVVQYVREQRP+AMVSVMALFPRADPKHK STTPWPVIDEVN MLERMLRLKFGTKKVLFV+CSDRFVVEDDSGREVLNKEFI+PDNLHLTSDGLKAWAECAEAAVHSGLRDN
Sbjct:  145 ITEELLGRVGGKTKSGWGSLAVWLHYYAYLGAINLGVAGDETQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDAQDTVGGVKAVVQYVREQRPEAMVSVMALFPRADPKHKKSTTPWPVIDEVNGMLERMLRLKFGTKKVLFVSCSDRFVVEDDSGREVLNKEFIMPDNLHLTSDGLKAWAECAEAAVHSGLRDN 343
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: D8LR16_ECTSI (Lipolytic enzyme, G-D-S-L n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR16_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 6.050e-107
Identity = 158/199 (79.40%), Postives = 177/199 (88.94%), Query Frame = 1 
Query:    1 LLQELLGKEGGKTRSGWGSLAVWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAVHSGLRDN 597
            + +ELLG  GGKTR  WGS AVW++YYA LG+INLGV+GDQTQHLLWRLQNGELPD+LQPESILVAIGTNNLG GMDA+DTVGGVKAVV+YVREQRPDA+VSVMALFPRADP  K + TPWPVIDEVN +LE +LRLKFGTKKV F++C+DRF+ ED  GREVLNKEFILPDNLHLT DGL AWA+CAEAAVHSGL + 
Sbjct:   27 ITEELLGTRGGKTRPDWGSPAVWMRYYADLGSINLGVSGDQTQHLLWRLQNGELPDLLQPESILVAIGTNNLGKGMDAQDTVGGVKAVVKYVREQRPDALVSVMALFPRADPNDKKNPTPWPVIDEVNGLLEHLLRLKFGTKKVHFIDCNDRFLAEDRYGREVLNKEFILPDNLHLTGDGLDAWADCAEAAVHSGLGEG 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: A0A6H5JTL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL2_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.380e-56
Identity = 97/130 (74.62%), Postives = 109/130 (83.85%), Query Frame = 1 
Query:   73 QYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFV 462
            +YYA LG+INLGV+GDQTQHLLWRLQNGELPDVLQPE             GMDA+DTVGGVKAVV+YVREQRPDA+VSVMALFPRADP  K + TPWPVIDEVN +LE MLRLKFGTKKV F++C+DR+V
Sbjct:   15 RYYADLGSINLGVSGDQTQHLLWRLQNGELPDVLQPE-------------GMDAQDTVGGVKAVVKYVREQRPDALVSVMALFPRADPNDKENPTPWPVIDEVNGLLEHMLRLKFGTKKVHFIDCNDRYV 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: A0A6B3L9T2_9BACT (GDSL family lipase n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A6B3L9T2_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.550e-26
Identity = 78/180 (43.33%), Postives = 105/180 (58.33%), Query Frame = 1 
Query:   64 VWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLG-AGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVID-EVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAVHSGLRDN 597
            VW +YYA  GA NLG +GD+TQHLLWRLQNGEL   LQPE I++ IGTNN G    +A +T  GV+AVV+ +R+  P A + ++A+FPR      T   P  V + EVN   ER+  L  G ++V F++  D F+  D S R+      I+PD LH   +G + WA   E  +   L D 
Sbjct:   53 VWQRYYAPRGAFNLGFSGDRTQHLLWRLQNGEL-GALQPEVIVLLIGTNNTGHVFQEAEETAAGVEAVVEQLRQHAPAAKLLLLAIFPRGG----TVDDPLRVRNAEVN---ERIQSLADG-ERVRFLDVGDGFLHGDGSLRDE-----IMPDLLHPREEGYRLWAAAMEPTLAEMLGDE 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: V9SF31_9BACT (SGNH hydrolase n=1 Tax=uncultured bacterium TaxID=77133 RepID=V9SF31_9BACT)

HSP 1 Score: 119 bits (297), Expect = 1.630e-26
Identity = 65/171 (38.01%), Postives = 98/171 (57.31%), Query Frame = 1 
Query:   64 VWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAV 576
            VW ++Y    A+NLG+ GDQTQH++WRL+NG + D ++P+  +V IGTNN G+G    +   GVKAVV+ +R + P+  V V+A+FPR          P   + +VN     ++      K V +++   +F+  DD+    L KE I+PD LHL+  G + WAE  E  V
Sbjct:   96 VWKEFYGNRNAVNLGIGGDQTQHVIWRLRNGNI-DNIKPKLAVVMIGTNNAGSGNKPEEVAAGVKAVVKTLRTRLPETKVLVLAIFPR-------EAKPDGRLRQVNAKANELIAKLADDKDVFYLDIGKKFLEPDDT----LTKE-IMPDLLHLSPKGYRIWAEAIEPMV 253
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: A0A3L7P6X4_9BACT (GDSL family lipase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7P6X4_9BACT)

HSP 1 Score: 116 bits (291), Expect = 1.840e-26
Identity = 67/183 (36.61%), Postives = 105/183 (57.38%), Query Frame = 1 
Query:   28 GGKTRSGWGSLAVWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAV 576
            GG+     G   ++ + +    A N G+ GD+TQH+LWRLQNGE  D +QP+++++ IGTNN+G G  A +   G++A+V  + ++ P   V ++A+FPRA  K          I+ VN    R+ ++  G KKV F+N   +F+ ED S    + KE I+PD LHL+  G + WA+    A+
Sbjct:   13 GGEGHGKGGGADIFEKEFKPKKAANFGIGGDRTQHVLWRLQNGEF-DSIQPKALMLMIGTNNIG-GNTADEIADGIEAIVAEINKRSPKTKVLLLAIFPRATAKGAALEAQTAKINAVNA---RIAKIDDGGKKVKFLNIGKKFLAEDGS----IPKE-IMPDQLHLSGKGYRIWADAVSPAL 185
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: UPI0013EA3A6A (platelet-activating factor acetylhydrolase IB subunit n=1 Tax=Paludisphaera soli TaxID=2712865 RepID=UPI0013EA3A6A)

HSP 1 Score: 117 bits (293), Expect = 3.990e-26
Identity = 66/183 (36.07%), Postives = 109/183 (59.56%), Query Frame = 1 
Query:   28 GGKTRSGWGSLAVWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAV 576
            G     GWG  A W ++Y   GA+N G+ GDQTQH+LWR+QNGEL D L P+ +++ IGTNN G+   A D   GV+A+V  +R++ P+  + ++ +FPR++    T        +++ ++ ER+ +L    +KV +++    F+ ED +    ++KE I+PD LHL+  G + WA+  E  +
Sbjct:   71 GDSITQGWGGNATWKEHYTPRGALNFGIGGDQTQHVLWRIQNGEL-DGLSPKVVVLMIGTNNAGSS-PAEDIAAGVEAIVADLRQRLPETDILLLGVFPRSEKPDATR-------EKLAKVNERISKL--DGEKVHYLDIGKVFLQEDGT----ISKE-IMPDFLHLSPKGYELWADAIEPTL 237
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: UPI0014093A98 (platelet-activating factor acetylhydrolase IB subunit n=1 Tax=Paraglaciecola sp. 20A4 TaxID=2687288 RepID=UPI0014093A98)

HSP 1 Score: 115 bits (287), Expect = 1.450e-25
Identity = 63/171 (36.84%), Postives = 103/171 (60.23%), Query Frame = 1 
Query:   67 WLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMD-ARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAV 576
            W +YYA+L  +NLG +GD T+HL+WRLQNGE+ D L P+  ++ IGTNN G  ++ A DT  GV+ ++Q VR++ P++ + ++A FPR+  K+         ++ VN +++         K V ++N    F+ ED     VLN   ++PD LHLTS+  + WA+  ++ +
Sbjct:   59 WHKYYAHLKPLNLGYSGDCTEHLIWRLQNGEI-DNLSPKLTVILIGTNNAGHRVETAEDTTAGVRVILQEVRKRLPNSKILLLATFPRSKSKNAPMRKK---VNAVNNLVQHFA----DNKNVFWLNIGQAFLTEDGL---VLNT--VMPDFLHLTSEQYQVWADAMQSTI 216
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: K6XSI5_9ALTE (1-alkyl-2-acetylglycerophosphocholine esterase n=3 Tax=Proteobacteria TaxID=1224 RepID=K6XSI5_9ALTE)

HSP 1 Score: 113 bits (283), Expect = 5.080e-25
Identity = 66/173 (38.15%), Postives = 105/173 (60.69%), Query Frame = 1 
Query:   61 AVWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDA-RDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAV 576
            A W ++YA+L  +NLG +GD T+HLLWRLQNGE+ D L P+  ++ IGTNN G  +++  DT  GVKAV+  VR + P++ + ++A FPR+  K+       P+   VN + + + R     + V ++N    F+ ED +   VL+   ++PD LHLTS+  + WAE  ++ +
Sbjct:   57 ATWNKHYAHLKPLNLGFSGDCTEHLLWRLQNGEI-DNLAPKLTVILIGTNNAGHRVESPEDTAAGVKAVLDEVRSRLPNSKILLLATFPRSKSKNA------PMRKRVNAINDLVQRFA-DNENVFWLNIGQVFLTEDGT---VLDT--VMPDFLHLTSEQYQVWAEAMQSTI 216
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Match: A0A7V4M639_9BACT (GDSL family lipase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4M639_9BACT)

HSP 1 Score: 114 bits (285), Expect = 5.740e-25
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 1 
Query:   28 GGKTRSGW--GSLAVWLQYYAYLGAINLGVAGDQTQHLLWRLQNGELPDVLQPESILVAIGTNNLGAGMDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVIDEVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLHLTSDGLKAWAECAEAAV 576
            G     GW  G   VW ++Y    A+NLG+ GDQTQH+LWRL NG + D+  P+  ++ IGTNN+ A     +   GVKA+VQ +R + P+  + V+A+FPR   K        P+   V +  E +  +  G K V F++   +F+ ED +    L+KE I+PD LHL++ G + WAE  E  V
Sbjct:   75 GDSITQGWEGGGKQVWDEFYGKRNAVNLGIGGDQTQHVLWRLANGNIKDI-SPKLAVLMIGTNNVHA-FKPEEIAAGVKAIVQKLRAELPETKILVLAIFPRGPNKED------PLRQAVVKTNELLANVGDG-KMVRFLDIGPKFLQEDGT----LSKE-IMPDLLHLSTKGYRIWAEAIEPVV 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12147.1815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXU0_9PHAE1.110e-12592.96SGNH_hydro domain-containing protein n=2 Tax=Ectoc... [more]
D8LR16_ECTSI6.050e-10779.40Lipolytic enzyme, G-D-S-L n=1 Tax=Ectocarpus silic... [more]
A0A6H5JTL2_9PHAE1.380e-5674.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B3L9T2_9BACT1.550e-2643.33GDSL family lipase n=1 Tax=Sulfuriroseicoccus ocea... [more]
V9SF31_9BACT1.630e-2638.01SGNH hydrolase n=1 Tax=uncultured bacterium TaxID=... [more]
A0A3L7P6X4_9BACT1.840e-2636.61GDSL family lipase n=1 Tax=Planctomycetes bacteriu... [more]
UPI0013EA3A6A3.990e-2636.07platelet-activating factor acetylhydrolase IB subu... [more]
UPI0014093A981.450e-2536.84platelet-activating factor acetylhydrolase IB subu... [more]
K6XSI5_9ALTE5.080e-2538.151-alkyl-2-acetylglycerophosphocholine esterase n=3... [more]
A0A7V4M639_9BACT5.740e-2537.84GDSL family lipase n=1 Tax=Planctomycetes bacteriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12147contigEcto-sp13_S_contig12147:15..4921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score245.0
Seed ortholog evalue1.9e-62
Seed eggNOG ortholog2880.D8LR17
Model size1761
KEGG rclassRC00037,RC00094
KEGG koko:K13171,ko:K16795
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko03013,ko03015,map00565,map01100,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.platelet-activating factor acetyltransferase activity
EggNOG OGsKOG1388@1,KOG1388@2759
EC3.1.1.47
Cds size375
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12147.1815.1prot_Ecto-sp13_S_contig12147.1815.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12147 1479..3760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.5001214-UTR-Ecto-sp13_S_contig12147:14..861681462645.5001214-UTR-Ecto-sp13_S_contig12147:14..86Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12147 15..86 +
1681462645.5201259-UTR-Ecto-sp13_S_contig12147:262..3731681462645.5201259-UTR-Ecto-sp13_S_contig12147:262..373Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12147 263..373 +
1681462645.532319-UTR-Ecto-sp13_S_contig12147:1436..14781681462645.532319-UTR-Ecto-sp13_S_contig12147:1436..1478Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12147 1437..1478 +
1681462645.582628-UTR-Ecto-sp13_S_contig12147:3760..49211681462645.582628-UTR-Ecto-sp13_S_contig12147:3760..4921Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12147 3761..4921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.5420744-CDS-Ecto-sp13_S_contig12147:1478..15231681462645.5420744-CDS-Ecto-sp13_S_contig12147:1478..1523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12147 1479..1523 +
1681462645.5515265-CDS-Ecto-sp13_S_contig12147:2144..22521681462645.5515265-CDS-Ecto-sp13_S_contig12147:2144..2252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12147 2145..2252 +
1681462645.5636716-CDS-Ecto-sp13_S_contig12147:3102..31791681462645.5636716-CDS-Ecto-sp13_S_contig12147:3102..3179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12147 3103..3179 +
1681462645.5739872-CDS-Ecto-sp13_S_contig12147:3615..37601681462645.5739872-CDS-Ecto-sp13_S_contig12147:3615..3760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12147 3616..3760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12147.1815.1

>prot_Ecto-sp13_S_contig12147.1815.1 ID=prot_Ecto-sp13_S_contig12147.1815.1|Name=mRNA_Ecto-sp13_S_contig12147.1815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MDARDTVGGVKAVVQYVREQRPDAMVSVMALFPRADPKHKTSTTPWPVID
EVNRMLERMLRLKFGTKKVLFVNCSDRFVVEDDSGREVLNKEFILPDNLH
LTSDGLKAWAECAEAAVHSGLRDN*
back to top

mRNA from alignment at Ecto-sp13_S_contig12147:15..4921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12147.1815.1 ID=mRNA_Ecto-sp13_S_contig12147.1815.1|Name=mRNA_Ecto-sp13_S_contig12147.1815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12147:15..4921+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTGCAGGAGCTTCTCGGCAAGGAGGGCGGCAAGACCAGATCCGGCTG
GGGTTCGCTCGCCGTGTGGTTGGTGAGGTGTAGCAGCAGCGGTCGCTTTC
TCTACTTCGTAGATTTTGCACCAGTCATGACGGCGAAACCAAATAACATG
AATAGCTCTTCTACAACGTTCCGAAGACTGTTTCCATCGCCGCATGGTTA
TGTGTGTCTGTGTCCTTTCGCACACCACGTTACTCCCCTCGATTCCAGCA
ATACTACGCGTATCTGGGAGCGATCAACCTCGGCGTGGCTGGGGATCAGA
CGCAACACCTTCTCTGGCGGTTGCAGAACGGCGAGCTGCCCGACGTGCTG
CAACCCGAGGTACTGCTCCTACCCACTCGCACATGCCATGGTTTTCACGC
TCTCGACTCGTCATTCGTTGGCCCCATGCGCATATGCTGTCGCCATTGCT
GCGCCTGTCGTCTTCTTCACGGCTCGTTGCCTCGAATCGTACTTTGGTTT
GTCTTTGGCGAGTTTTGATTGTTTGCCGGTTTACCTGCCACAAGGTTTGT
CGGCTTTTCGGAGGTCAGAGACGGGAACCTCGTTACGGAGGTACCTACCG
AATACAGCAGAGGGAGACCAGAAGCGTTTCGGTTATCAGCGAATATCACA
ACACCGCTGACGAGACCGTTCGTACGCGTCGATAGGAGTATGTAGTTGCC
CTCACGTGGCTCGTGTAAGCCAAGCTGCGTCGCAGGAGGAGATGACACAT
TTTCGTATTCTGGTGCGTAGTATATTTTGTGAAATACAACTAGCTTTTCC
GGCATTGTTACGGTCACAGACCGTCGAACTTGGGGTTATTCTTTGCTCGC
CTTTTCTGCAGAGCCTCAAGCCCCGGTTTCCCTGCATGGATTTCTTGCAA
CACGGCTCTTCGTCAACTGTACTGACGGCCCGGTCTCGCACTTATTTCGT
TTTGTGCCGTGTGCCTGGTGGGAGGAGCATCCAGATATGTTGGTTTTACC
CACGGTAAAAAGAGGTTCACGGTACTCCCGAGAAACCGTTCGAGGAACGC
GAGTAATTGCTCATGTGTCCAGTCTTACGTTTCTTCTCTCTATCCCTTGC
CTCTAATGTTGCGTTTGAGCTGGTTCCTTGGGAGCCAGGGGCTGCAGTCG
AGGGTATTGGTCGGCTTTCAAGCGGCGCGGCTTGCACTGTTCACAGCGTT
TTAATGTTTGGCGTTGGTAGGCAGACAGCAGGCGGCCTGTGCCCGGGCAC
CCCTTGGTTCCGACGAGACTGCTGATGACCCTCTATTGTGGAGATCTCCG
TCGCCGTGCAACACGGCTGTGCGTACATGCACCTCTCCCTCCGTGACCCT
TTCCCCTGCCCTGCCGTGGTTGCAATTTCATCTGTCGTTTGTCTCTTGTG
TAATTCTGGCGGACACGTGAAGTCGATCCTTGTGGCCATCGGGACCAACA
ACCTCGGGGCCGGCATGGATGCGCGAGACACCGTCGGAGGAGTCAAGGCC
GTCGTCCAGGTAAAGACAAGGGAAACAACAAATGGCTGACGGCGGAGCAC
ATGTACACTCGTTCATACCTGTACCCCATGAGTGTGGGCGACACGCAGAG
AGTTCCACATCACGGACATGTGCCAGGGGTCAAGAGGCCGCCCATGCCTT
TTCGGCGGGGGTATAGCGTTAGTCTCGTCTGCATGCGCACGCGTCGCCGG
TGTGAATCTGTTTTTGCAAGATTCGTTTTTCTTTCTGACTTTTTTTTTGT
GTGTGTTTTTTGCACCGCTTCGGACAAGCCTTGCGCGAATGACCAGAGAG
GGCTGTACGCGACGCTCTCTGTGCGTGCTTGCCCGTGAGAGTTGAACCTG
TTCCGTGGACGGCACCGTCGATCCATTTGTCGCCGCACCGACAGTCACCC
TTGTCGACATTCCTCTTATGTCGCGGGATGGTCGTATCTTTTCCCACACA
CCGTGTCTGCGTCAGTAGGACCAGCACGGGTACTAGAAGGCACTGAGCGT
ACACCGTTGTGGTTTTTGATGTGGAGACAGCAGCAGCAACGACGAACAGC
AACACCCCCATACTTGACGGTGAAACGCGTGAAAGTTGTTTCGTTTGTGA
CCGGATGGCTGCCTCTCGCACTCTCCTCAGTACGTGCGAGAGCAAAGACC
CGACGCGATGGTGTCCGTGATGGCCCTGTTCCCGAGAGCTGACCCGAAGC
ACAAGACGAGCACAACCCCGTGGCCGGTGATCGATGAGGTACGGCCCATC
CTCCTACCCCTTTTTGACGGGACAGCGGCAGTGGGGAGCTATGGTATAAT
CGTTGTTGGCGCCTACCCACAGTCTTTTTAGACTTTCTTCCTTCTAGCCG
ATTGAGGCTACCCGACAAACGGTACCTTGAGCAACAGGAATGGCACTCCC
TGTAGGTCAACTACGTGTTTTTTCACTCACACTGAAAAAGCGGTTGCTCA
GAGGATTCGTGGCTGGTCGGGTGTGTTTCTACATTTGTTTTTCAACCATC
CCTCTTCGCACGGTTTTCTCGTATCAGGTATGCCTCTATATGTCCGCATA
GTATCGCGACGACGATTGTCGGCAGTTTTCCACGACGGGCTCGTTGTCCC
CCCTTTCATTGGTTTGGATAGTGTTGGTTTTAGGCCCTCGCGGAAGACAA
GACTATCGGTAGATTTAAAGCGGAGCCAAGCATGCCGGGTGAGACTGCAC
GTTGTGCTCAAGGAGGAGGATCGGGGGGAGCAGCTGACGCCTGTCGCTGT
AGCAGTGATCCCTCTTTGCGCTGTAGAACGTGGCTTCGCTTAACCACCAC
ACCGACGACCACGCAGATGTTGTCTTACTGTCGCAGTTCGTCACAACAAT
AGCCCGAACCGTTCATGCGCGTCCGAGTAGACGAACGGATCAATCGCCAC
GACTGAGATCACAGCCACTAGATCCGTCTTGCCGCCTCCAGCCTCAAGAG
CGAAACTTTCGTCCGTTTTGCGTGCGTTCGAGCCGTAGGGCTCTGTTCGC
GAGCAGTGACGCAGGGGCTCTGACCCTAGACTCTTTTTTGATGTTGGATG
TGCTTTGCGTGTGACGCGAACGAACGCCGCTTGTAAAGGTTAACAGGATG
CTTGAGCGCATGCTGAGGCTGAAGTTCGGCACGAAGAAGGTTCTCTTCGT
GAACTGCAGTGACAGGTACAGCATGGTATAATTCTACTTGTACACCTGCT
GGTGCGTTGCCTGCGCGCCCTCCCCCCTTGAAGTACTGGTGCTGGTCGTT
TTGTATTGGCGCCTTCTGCGGCTGAGTGGCTGTCTAGCCTGGCGGTTGGC
GCGGCAGTTGCTGCGGTGTCCCAGGCACTGTACCCAACAAATTTGATAAG
CGACGAATGTCGCCTTTCGCTGGAGCAGAGGCGTAAAGAGCAACCCGGCA
TGATGTGGATTGCTCTCGGGTGTTGCGCGGTTCCGTCCAACGCTCGGCCG
AGGCCTCTACCGGCGGCGACTCGACTTGCGACGGGGGGCAAGTACTATTT
TCTGTTCCACGATTCGCACCACAACCCCGCCCTCGACAACCCCCCTGTCG
CGTTACACCGCTCCACAAACGAACCGTGTGTGTGGCCGGACCGAATTGTA
GGTTTGTGGTGGAAGACGACTCTGGTCGCGAGGTGCTCAACAAGGAGTTC
ATCCTGCCGGACAACCTTCACCTCACCAGCGACGGCCTGAAGGCTTGGGC
CGAGTGCGCGGAAGCCGCGGTTCACTCTGGGCTACGGGACAACTAGTGGC
AAGAAGCCAGTAGGTCGACCGTTTGTATGTTGTGTTGTATGCGATTTGTG
TACAAGTTGTGTGGTTGCGTGCTCGCGTGTGAATAGTCGACACGCCGTTA
TTTTTTTTGATAAGTATGAGTTTTACACGGTGCGGGGTAGTCGACTGACT
GGTGCATTTTTACGGTCGCATTTTCAGATATTTCTAGAGGTGATGCCCAC
GGCGACTAGCTGTCCAACTAAGGACCTTTTCCTGCCGGAACGAGGTAGCT
TTAGTCCCTCTCCTGTTTTAAGATGAGGGGCAGCAGGTGTGCTAGTGACG
GTAGGCCGTTTTCTCCGTCGAGTGTCGTGCGCTCTGGTCTCATTTCACTG
TAAATTTGTGACTGCCGGTTGAGCGTCTGATATTTTCACGAAATGTATGT
GTTGGTGTGAATTACGAGCCCGATTGAGCTGCTGCTGTAAATAGCTTTCA
ATGTCGATCAAGGGTTCCCTGTGTACATCTGTGTTGTAATATTATCTTGC
GAGAGACTTGTCGTATCCGTGTATGGTATGATAAACACTGGGTTTGTTGT
GTCATTCGCACGAATCACCACGTGTCCAGAAGAACACGCTTGGGTTCGGG
GGCGGGGTTTCTGAGATAATGCTGTATTTTCTCCATCGGCTGTGTGGACT
GTTGATGCGTGATTGAAATGCCACCATCATGAGGCTTGAAGATCAGATAC
ACTTCCTGTGAACACATCACAACCGCAAAGGTTGGTGTTGTGCGTGGCTT
TTCATGCAGAGTCCCCAAAACGACCCCCACGCAAGCCGACTTTTTTGTTG
CTGGGATTTTTTGTTTCATTTGCGGCTAGGGGTGGGAGGTGGATGCAGGA
GACGTTTGTCCTTTGTTGTTCGTGTATGTCTGCTGTTCTCCTTAACAACA
TTTCTTCACGTCAGTGTGTGCCGGTGAGATGCCGTTATCTCCTGGTCTGA
CTCACTTGTCCTTCTCGTTGGGTGAAGCTTGTGAGGGAATGTACCTCCAA
GCTGGTTCAGGACCTGGATACAAGACTATTCAACATGAAAACTTCACGCC
GTTTTCAGGAGCTGGACTTTGAAACTTTGCACACATGTATCTTGGGGTCA
GTACGAAAGTTTGAATGGAGGGATCTTTTATTTTTTCTCCTTTCGCCAGA
CATCCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12147:15..4921+

>mRNA_Ecto-sp13_S_contig12147.1815.1 ID=mRNA_Ecto-sp13_S_contig12147.1815.1|Name=mRNA_Ecto-sp13_S_contig12147.1815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12147:15..4921+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCGCGAGACACCGTCGGAGGAGTCAAGGCCGTCGTCCAGTACGT
GCGAGAGCAAAGACCCGACGCGATGGTGTCCGTGATGGCCCTGTTCCCGA
GAGCTGACCCGAAGCACAAGACGAGCACAACCCCGTGGCCGGTGATCGAT
GAGGTTAACAGGATGCTTGAGCGCATGCTGAGGCTGAAGTTCGGCACGAA
GAAGGTTCTCTTCGTGAACTGCAGTGACAGGTTTGTGGTGGAAGACGACT
CTGGTCGCGAGGTGCTCAACAAGGAGTTCATCCTGCCGGACAACCTTCAC
CTCACCAGCGACGGCCTGAAGGCTTGGGCCGAGTGCGCGGAAGCCGCGGT
TCACTCTGGGCTACGGGACAACTAG
back to top